Wall clock time and date at job start Mon Mar 30 2020 01:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47031 * 2 1 4 4 C 1.53003 * 109.47073 * 120.00338 * 2 1 3 5 5 C 1.52998 * 109.46682 * 175.00061 * 4 2 1 6 6 O 1.42909 * 109.46930 * 179.97438 * 5 4 2 7 7 C 1.35903 * 116.99847 * 179.97438 * 6 5 4 8 8 C 1.38858 * 119.97138 * 359.72576 * 7 6 5 9 9 C 1.37973 * 120.02757 * 179.76355 * 8 7 6 10 10 C 1.39111 * 119.96688 * 0.51168 * 9 8 7 11 11 N 1.39514 * 120.02522 * 179.72083 * 10 9 8 12 12 C 1.34776 * 120.00053 * 213.24661 * 11 10 9 13 13 O 1.21780 * 119.99914 * 5.13673 * 12 11 10 14 14 C 1.41764 * 120.00411 * 185.13379 * 12 11 10 15 15 H 1.08000 * 119.99833 * 6.25220 * 14 12 11 16 16 C 1.40136 * 120.00425 * 186.25292 * 14 12 11 17 17 N 1.30633 * 120.00078 * 353.72179 * 16 14 12 18 18 Si 1.86802 * 120.00330 * 173.72397 * 16 14 12 19 19 H 1.48493 * 109.47322 * 94.98232 * 18 16 14 20 20 H 1.48501 * 109.47031 * 214.98400 * 18 16 14 21 21 H 1.48501 * 109.46811 * 334.98085 * 18 16 14 22 22 C 1.39099 * 119.94352 * 359.74459 * 10 9 8 23 23 C 1.37970 * 119.97419 * 359.97438 * 22 10 9 24 24 H 1.08999 * 109.47202 * 299.99673 * 1 2 3 25 25 H 1.08993 * 109.47461 * 60.00202 * 1 2 3 26 26 H 1.09002 * 109.47144 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46576 * 239.99952 * 2 1 3 28 28 H 1.08999 * 109.46860 * 60.00118 * 3 2 1 29 29 H 1.09003 * 109.46729 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46897 * 300.00232 * 3 2 1 31 31 H 1.08998 * 109.47578 * 54.99419 * 4 2 1 32 32 H 1.08997 * 109.47063 * 294.99485 * 4 2 1 33 33 H 1.09001 * 109.47777 * 60.00153 * 5 4 2 34 34 H 1.08995 * 109.47137 * 299.99037 * 5 4 2 35 35 H 1.08001 * 119.99262 * 359.97438 * 8 7 6 36 36 H 1.07996 * 120.01899 * 180.23119 * 9 8 7 37 37 H 0.96998 * 120.00069 * 33.24700 * 11 10 9 38 38 H 0.96991 * 120.00382 * 180.02562 * 17 16 14 39 39 H 1.08004 * 120.01452 * 179.97438 * 22 10 9 40 40 H 1.07998 * 119.98738 * 179.97438 * 23 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8311 1.1879 6 8 4.0413 -1.5043 2.3549 7 6 5.3842 -1.6858 2.4574 8 6 6.2248 -1.2295 1.4507 9 6 7.5887 -1.4088 1.5559 10 6 8.1208 -2.0567 2.6660 11 7 9.4994 -2.2439 2.7708 12 6 9.9858 -3.3452 3.3766 13 8 9.2260 -4.2210 3.7490 14 6 11.3818 -3.4841 3.5802 15 1 12.0462 -2.6664 3.3428 16 6 11.8999 -4.6825 4.0895 17 7 11.0902 -5.6255 4.4915 18 14 13.7483 -4.9315 4.1937 19 1 14.2218 -4.5622 5.5518 20 1 14.0716 -6.3561 3.9271 21 1 14.4208 -4.0741 3.1848 22 6 7.2773 -2.5180 3.6711 23 6 5.9141 -2.3323 3.5663 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.6767 1.9563 0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6054 -1.7198 1.2952 32 1 1.7517 -0.1584 2.1369 33 1 3.9995 0.1675 1.1420 34 1 3.8531 -1.3940 0.3002 35 1 5.8110 -0.7309 0.5866 36 1 8.2426 -1.0505 0.7746 37 1 10.1078 -1.5814 2.4076 38 1 11.4487 -6.4547 4.8444 39 1 7.6891 -3.0215 4.5333 40 1 5.2589 -2.6907 4.3464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187574853.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:15 Heat of formation + Delta-G solvation = -91.929900 kcal Electronic energy + Delta-G solvation = -20491.563366 eV Core-core repulsion = 17269.958644 eV Total energy + Delta-G solvation = -3221.604721 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.21627 -40.01779 -38.21023 -37.10354 -35.05072 -34.36662 -31.98888 -30.95655 -29.74496 -28.05150 -27.91551 -25.09883 -23.47829 -23.19796 -21.47789 -20.87885 -19.45867 -19.01436 -17.80124 -17.59263 -17.09907 -16.72954 -15.90819 -15.73011 -15.44426 -15.09257 -14.78849 -14.65363 -14.53745 -14.08266 -13.95703 -13.62464 -13.52676 -13.11385 -13.04233 -12.85212 -12.73673 -12.65026 -12.57896 -12.08972 -12.00751 -11.74650 -11.70120 -11.47380 -11.40397 -10.99250 -10.42995 -10.03499 -9.74447 -8.40490 -8.38775 -6.99898 0.44295 0.55388 1.39608 1.40382 1.57468 2.21195 2.29007 2.37171 2.88669 3.04863 3.65330 3.85123 3.90085 3.96058 4.02804 4.05275 4.25552 4.34890 4.46263 4.47769 4.55659 4.74096 4.80579 4.83565 4.92432 4.99890 5.05584 5.09534 5.11954 5.21075 5.22813 5.30529 5.39114 5.45673 5.50123 5.54789 5.74758 5.90493 6.20243 6.37196 6.61509 6.74404 7.43517 8.39884 8.57981 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.060138 B = 0.002734 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.480330 B =10237.805141 C =10522.114237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.154 4.154 4 C -0.110 4.110 5 C 0.051 3.949 6 O -0.332 6.332 7 C 0.089 3.911 8 C -0.175 4.175 9 C -0.127 4.127 10 C 0.126 3.874 11 N -0.695 5.695 12 C 0.530 3.470 13 O -0.617 6.617 14 C -0.566 4.566 15 H 0.091 0.909 16 C 0.030 3.970 17 N -0.803 5.803 18 Si 1.002 2.998 19 H -0.261 1.261 20 H -0.272 1.272 21 H -0.246 1.246 22 C -0.115 4.115 23 C -0.140 4.140 24 H 0.055 0.945 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.077 0.923 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.150 0.850 37 H 0.406 0.594 38 H 0.279 0.721 39 H 0.102 0.898 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.771 13.259 -10.001 21.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.211 4.211 4 C -0.148 4.148 5 C -0.024 4.024 6 O -0.247 6.247 7 C 0.043 3.957 8 C -0.194 4.194 9 C -0.148 4.148 10 C 0.029 3.971 11 N -0.341 5.341 12 C 0.339 3.661 13 O -0.504 6.504 14 C -0.601 4.601 15 H 0.109 0.891 16 C -0.188 4.188 17 N -0.431 5.431 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.196 1.196 21 H -0.169 1.169 22 C -0.136 4.136 23 C -0.160 4.160 24 H 0.075 0.925 25 H 0.084 0.916 26 H 0.074 0.926 27 H 0.095 0.905 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.177 0.823 36 H 0.167 0.833 37 H 0.241 0.759 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.427 12.402 -9.508 21.268 hybrid contribution 1.114 -0.203 0.159 1.143 sum -13.313 12.199 -9.349 20.334 Atomic orbital electron populations 1.21819 0.94071 1.02084 1.02358 1.21036 0.96595 0.96439 0.96832 1.21954 1.01223 0.95520 1.02382 1.21610 0.91717 1.01806 0.99653 1.23121 0.96173 0.96838 0.86260 1.85994 1.18828 1.75153 1.44691 1.18856 0.82864 0.98612 0.95348 1.21215 0.92909 1.05239 1.00022 1.20961 0.95546 1.02455 0.95831 1.18163 0.85132 0.99317 0.94454 1.43642 1.03786 1.24685 1.61952 1.17425 0.90269 0.80111 0.78306 1.90612 1.60819 1.42659 1.56353 1.20580 0.92169 1.02287 1.45108 0.89053 1.27062 1.05972 0.94339 0.91395 1.70172 1.39232 1.05517 1.28152 0.84942 0.74499 0.78544 0.79948 1.18574 1.19630 1.16912 1.20942 0.93050 1.00824 0.98814 1.20307 0.93931 1.02992 0.98737 0.92546 0.91600 0.92587 0.90494 0.92578 0.92505 0.91651 0.91341 0.91144 0.90822 0.91584 0.82304 0.83266 0.75885 0.91108 0.87944 0.85257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.19 71.98 0.66 -0.92 16 2 C -0.09 -1.12 2.92 -10.79 -0.03 -1.15 16 3 C -0.15 -1.75 8.95 71.98 0.64 -1.10 16 4 C -0.11 -1.82 5.05 30.59 0.15 -1.67 16 5 C 0.05 1.03 4.49 71.98 0.32 1.35 16 6 O -0.33 -9.79 10.13 -92.46 -0.94 -10.72 16 7 C 0.09 3.00 6.69 22.57 0.15 3.15 16 8 C -0.17 -5.23 9.03 22.36 0.20 -5.03 16 9 C -0.13 -4.29 9.96 22.42 0.22 -4.07 16 10 C 0.13 5.53 6.28 38.34 0.24 5.77 16 11 N -0.70 -32.56 5.31 -311.33 -1.65 -34.21 16 12 C 0.53 30.84 7.30 85.11 0.62 31.46 16 13 O -0.62 -41.18 12.57 -4.60 -0.06 -41.24 16 14 C -0.57 -31.54 9.31 23.60 0.22 -31.32 16 15 H 0.09 4.50 7.86 -2.91 -0.02 4.48 16 16 C 0.03 1.66 5.49 85.33 0.47 2.12 16 17 N -0.80 -48.26 11.76 21.85 0.26 -48.01 16 18 Si 1.00 39.71 29.56 68.60 2.03 41.74 16 19 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 20 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 21 H -0.25 -9.00 7.11 99.48 0.71 -8.30 16 22 C -0.12 -5.37 8.65 22.41 0.19 -5.17 16 23 C -0.14 -5.55 9.98 22.36 0.22 -5.33 16 24 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 25 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.66 6.57 -2.39 -0.02 0.64 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.07 1.31 6.10 -2.39 -0.01 1.29 16 34 H 0.07 1.24 7.64 -2.39 -0.02 1.22 16 35 H 0.16 3.45 6.29 -2.91 -0.02 3.43 16 36 H 0.15 4.08 8.06 -2.91 -0.02 4.05 16 37 H 0.41 15.82 8.77 -92.71 -0.81 15.01 16 38 H 0.28 15.08 8.29 -92.72 -0.77 14.31 16 39 H 0.10 5.59 6.39 -2.91 -0.02 5.57 16 40 H 0.13 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -74.71 333.11 4.16 -70.55 By element: Atomic # 1 Polarization: 33.56 SS G_CDS: 0.23 Total: 33.78 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 4.30 Total: -11.90 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.40 Total: -82.22 kcal Atomic # 8 Polarization: -50.97 SS G_CDS: -0.99 Total: -51.96 kcal Atomic # 14 Polarization: 39.71 SS G_CDS: 2.03 Total: 41.74 kcal Total: -74.71 4.16 -70.55 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187574853.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.377 kcal (2) G-P(sol) polarization free energy of solvation -74.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds