Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47206 * 2 1 4 4 C 1.53000 * 109.47580 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47229 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47058 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 5 4 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 5 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.08999 * 109.47273 * 299.99931 * 1 2 3 25 25 H 1.08995 * 109.46987 * 60.00580 * 1 2 3 26 26 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47416 * 239.99782 * 2 1 3 28 28 H 1.08999 * 109.47480 * 119.99421 * 2 1 3 29 29 H 1.08996 * 109.47548 * 59.99442 * 3 2 1 30 30 H 1.09003 * 109.46871 * 300.00226 * 3 2 1 31 31 H 1.09004 * 109.46986 * 59.99478 * 4 3 2 32 32 H 1.09000 * 109.46715 * 300.00025 * 4 3 2 33 33 H 1.08999 * 109.46796 * 60.00185 * 5 4 3 34 34 H 1.08995 * 109.47178 * 299.99712 * 5 4 3 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 5 4 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5449 2.8851 0.0012 7 6 6.2189 4.0523 0.0015 8 8 5.6109 5.1053 0.0011 9 6 7.6942 4.0524 0.0033 10 6 8.3966 2.8452 0.0042 11 6 9.7750 2.8519 0.0054 12 6 10.4687 4.0515 0.0061 13 6 9.7880 5.2521 0.0063 14 6 8.3997 5.2646 0.0047 15 8 7.7294 6.4425 0.0043 16 6 8.4656 7.5657 0.1228 17 1 9.5439 7.5063 0.1301 18 6 7.8381 8.7975 0.2354 19 7 6.5250 8.8699 0.2261 20 14 8.8582 10.3538 0.3988 21 1 9.7290 10.5026 -0.7948 22 1 7.9556 11.5285 0.5033 23 1 9.7007 10.2676 1.6186 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 3.7162 3.3994 0.8895 34 1 3.7170 3.3983 -0.8904 35 1 6.0300 2.0451 0.0019 36 1 7.8606 1.9077 -0.0008 37 1 10.3168 1.9177 0.0065 38 1 11.5487 4.0468 0.0075 39 1 10.3358 6.1828 0.0073 40 1 6.0861 9.7313 0.3052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194041901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -57.494403 kcal Electronic energy + Delta-G solvation = -20781.934723 eV Core-core repulsion = 17561.823237 eV Total energy + Delta-G solvation = -3220.111486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.55348 -38.12543 -36.39585 -36.22337 -33.98219 -32.32229 -31.27369 -29.93102 -28.89729 -26.07497 -25.28677 -23.07018 -21.94188 -21.24743 -21.15330 -19.72288 -18.01813 -17.47679 -16.08272 -16.03558 -15.46977 -14.70696 -14.64024 -14.28588 -14.16480 -13.86408 -13.82851 -13.57977 -13.15016 -13.14235 -12.61512 -12.44303 -12.13796 -11.73316 -11.69008 -11.33121 -11.25847 -11.11046 -11.09801 -10.90702 -10.86684 -10.74414 -10.65850 -10.46122 -9.55085 -8.85894 -8.80440 -8.49466 -8.24201 -7.28806 -6.42251 -4.02372 1.74399 2.33914 3.12847 3.15086 3.17430 3.74049 3.79458 3.95302 4.66783 4.67024 4.75596 4.90200 5.08692 5.11349 5.17799 5.20628 5.44605 5.48776 5.55799 5.56757 5.59726 5.70217 5.76441 5.80928 5.91404 5.95428 6.03411 6.13997 6.14541 6.23339 6.29848 6.58466 6.71566 6.93302 7.02389 7.08064 7.25989 7.31064 7.71558 7.94362 8.18280 8.97119 9.15308 9.69960 10.71553 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.003922 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.361292 B = 7136.713517 C = 8633.856299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.124 4.124 3 C -0.118 4.118 4 C -0.130 4.130 5 C 0.123 3.877 6 N -0.745 5.745 7 C 0.552 3.448 8 O -0.502 6.502 9 C -0.227 4.227 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.189 3.811 15 O -0.124 6.124 16 C -0.405 4.405 17 H 0.093 0.907 18 C 0.045 3.955 19 N -0.833 5.833 20 Si 0.941 3.059 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.391 0.609 36 H 0.111 0.889 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.238 -15.263 -0.208 15.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.161 4.161 3 C -0.156 4.156 4 C -0.168 4.168 5 C -0.001 4.001 6 N -0.401 5.401 7 C 0.342 3.658 8 O -0.376 6.376 9 C -0.232 4.232 10 C -0.057 4.057 11 C -0.251 4.251 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.129 3.871 15 O -0.022 6.022 16 C -0.480 4.480 17 H 0.111 0.889 18 C -0.163 4.163 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.225 0.775 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.178 -14.157 -0.214 14.763 hybrid contribution 0.894 0.268 0.077 0.937 sum -3.284 -13.889 -0.137 14.273 Atomic orbital electron populations 1.21781 0.95972 1.01409 1.01934 1.21522 0.95792 0.96893 1.01933 1.21539 0.94593 0.96826 1.02684 1.21799 0.96076 0.96446 1.02436 1.21202 0.80570 0.96098 1.02191 1.45904 1.06386 1.08648 1.79178 1.18247 0.87425 0.83349 0.76824 1.90946 1.69419 1.30249 1.47009 1.18875 0.91921 0.91885 1.20477 1.20761 0.94209 0.95153 0.95621 1.20459 0.93770 0.97242 1.13584 1.20891 0.98663 0.92261 0.95178 1.21154 0.93779 0.98818 1.11995 1.19287 0.90202 0.86916 0.90695 1.84180 1.34126 1.10336 1.73529 1.21454 0.91152 0.82567 1.52873 0.88931 1.25385 0.96108 0.98643 0.96180 1.70119 1.07783 1.26129 1.42389 0.85798 0.78908 0.79551 0.79251 1.19374 1.20162 1.19379 0.92712 0.92709 0.92951 0.92083 0.92080 0.91609 0.91611 0.91513 0.91500 0.91951 0.91962 0.77467 0.87067 0.87297 0.87203 0.85088 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.76 16 2 C -0.12 -0.98 5.93 -26.73 -0.16 -1.14 16 3 C -0.12 -1.10 5.21 -26.73 -0.14 -1.24 16 4 C -0.13 -1.32 5.33 -26.73 -0.14 -1.47 16 5 C 0.12 1.81 5.67 -4.04 -0.02 1.79 16 6 N -0.75 -12.36 5.51 -61.35 -0.34 -12.70 16 7 C 0.55 12.48 7.76 -12.47 -0.10 12.38 16 8 O -0.50 -14.12 15.17 -16.57 -0.25 -14.37 16 9 C -0.23 -5.03 5.89 -104.81 -0.62 -5.64 16 10 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 11 C -0.23 -3.84 10.03 -39.61 -0.40 -4.24 16 12 C -0.05 -0.92 10.03 -39.54 -0.40 -1.31 16 13 C -0.24 -5.19 9.16 -39.44 -0.36 -5.55 16 14 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 15 O -0.12 -3.71 7.84 -21.08 -0.17 -3.87 16 16 C -0.40 -11.59 9.49 30.90 0.29 -11.30 16 17 H 0.09 2.40 5.21 -52.49 -0.27 2.12 16 18 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 19 N -0.83 -25.39 13.67 55.48 0.76 -24.63 16 20 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 22 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 23 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 24 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.39 5.14 6.50 -40.82 -0.27 4.87 16 36 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.51 16 40 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 336.89 15.07 5.08 5.08 Total: -1.00 -34.65 336.89 -8.14 -42.79 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -5.80 Total: 5.87 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -2.40 Total: -13.85 kcal Atomic # 7 Polarization: -37.75 SS G_CDS: 0.42 Total: -37.33 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.42 Total: -18.24 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -34.65 -8.14 -42.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194041901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.704 kcal (2) G-P(sol) polarization free energy of solvation -34.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds