Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47206 * 2 1 4 4 C 1.53000 * 109.47580 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.47229 * 179.97438 * 4 3 2 6 6 N 1.46499 * 109.47058 * 179.97438 * 5 4 3 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 5 4 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 5 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.08999 * 109.47273 * 299.99931 * 1 2 3 25 25 H 1.08995 * 109.46987 * 60.00580 * 1 2 3 26 26 H 1.09000 * 109.46901 * 180.02562 * 1 2 3 27 27 H 1.08991 * 109.47416 * 239.99782 * 2 1 3 28 28 H 1.08999 * 109.47480 * 119.99421 * 2 1 3 29 29 H 1.08996 * 109.47548 * 59.99442 * 3 2 1 30 30 H 1.09003 * 109.46871 * 300.00226 * 3 2 1 31 31 H 1.09004 * 109.46986 * 59.99478 * 4 3 2 32 32 H 1.09000 * 109.46715 * 300.00025 * 4 3 2 33 33 H 1.08999 * 109.46796 * 60.00185 * 5 4 3 34 34 H 1.08995 * 109.47178 * 299.99712 * 5 4 3 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 5 4 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0799 2.8851 0.0000 6 7 5.5449 2.8851 0.0012 7 6 6.2189 4.0523 0.0015 8 8 5.6109 5.1053 0.0011 9 6 7.6942 4.0524 0.0033 10 6 8.3966 2.8452 0.0042 11 6 9.7750 2.8519 0.0054 12 6 10.4687 4.0515 0.0061 13 6 9.7880 5.2521 0.0063 14 6 8.3997 5.2646 0.0047 15 8 7.7294 6.4425 0.0043 16 6 8.4656 7.5657 0.1228 17 1 9.5439 7.5063 0.1301 18 6 7.8381 8.7975 0.2354 19 7 6.5250 8.8699 0.2261 20 14 8.8582 10.3538 0.3988 21 1 9.7290 10.5026 -0.7948 22 1 7.9556 11.5285 0.5033 23 1 9.7007 10.2676 1.6186 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9564 0.8899 30 1 1.6766 1.9563 -0.8900 31 1 3.9337 0.9285 -0.8891 32 1 3.9329 0.9289 0.8909 33 1 3.7162 3.3994 0.8895 34 1 3.7170 3.3983 -0.8904 35 1 6.0300 2.0451 0.0019 36 1 7.8606 1.9077 -0.0008 37 1 10.3168 1.9177 0.0065 38 1 11.5487 4.0468 0.0075 39 1 10.3358 6.1828 0.0073 40 1 6.0861 9.7313 0.3052 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194041901.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -80.674491 kcal Electronic energy + Delta-G solvation = -20782.939887 eV Core-core repulsion = 17561.823237 eV Total energy + Delta-G solvation = -3221.116650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.27364 -39.84686 -38.03152 -37.33964 -35.29341 -34.32507 -32.62147 -31.16532 -30.56201 -27.51231 -26.92738 -24.51508 -23.27205 -22.57898 -22.08235 -21.27058 -19.84628 -19.19347 -17.81657 -17.03504 -16.96938 -16.34011 -16.04512 -15.93316 -15.73104 -15.39801 -15.30286 -14.59788 -14.57062 -14.25663 -14.19278 -13.87756 -13.54882 -13.24318 -12.95875 -12.71988 -12.57407 -12.50133 -12.35294 -12.15059 -11.99600 -11.94049 -11.67728 -11.42732 -11.38668 -10.82562 -10.60539 -10.10736 -9.77365 -9.03453 -8.44506 -6.15848 0.12746 0.73207 1.31909 1.45197 1.50090 2.09955 2.16110 2.29965 2.87840 3.22883 3.47331 3.81585 3.96052 3.99607 4.09282 4.16031 4.29855 4.31189 4.43742 4.52425 4.59249 4.65969 4.70227 4.85628 4.93317 4.99500 5.04365 5.07738 5.11328 5.14351 5.19549 5.31366 5.44251 5.48731 5.51332 5.57285 5.61790 5.69983 5.96110 6.17753 6.71993 6.94480 7.49474 7.80671 8.75994 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.018209 B = 0.003922 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1537.361292 B = 7136.713517 C = 8633.856299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.119 4.119 3 C -0.119 4.119 4 C -0.114 4.114 5 C 0.120 3.880 6 N -0.718 5.718 7 C 0.544 3.456 8 O -0.572 6.572 9 C -0.246 4.246 10 C -0.029 4.029 11 C -0.200 4.200 12 C -0.040 4.040 13 C -0.258 4.258 14 C 0.147 3.853 15 O -0.190 6.190 16 C -0.429 4.429 17 H 0.107 0.893 18 C -0.023 4.023 19 N -0.906 5.906 20 Si 1.023 2.977 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.254 1.254 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.413 0.587 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.610 -19.442 -0.159 19.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.157 4.157 3 C -0.157 4.157 4 C -0.151 4.151 5 C -0.004 4.004 6 N -0.373 5.373 7 C 0.334 3.666 8 O -0.452 6.452 9 C -0.251 4.251 10 C -0.048 4.048 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.278 4.278 14 C 0.092 3.908 15 O -0.092 6.092 16 C -0.505 4.505 17 H 0.124 0.876 18 C -0.222 4.222 19 N -0.542 5.542 20 Si 0.841 3.159 21 H -0.177 1.177 22 H -0.198 1.198 23 H -0.178 1.178 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.251 0.749 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.505 -18.475 -0.168 18.537 hybrid contribution 0.200 1.062 0.045 1.081 sum -1.305 -17.413 -0.123 17.462 Atomic orbital electron populations 1.21797 0.95762 1.02034 1.01701 1.21488 0.95985 0.95520 1.02682 1.21549 0.93970 0.98083 1.02148 1.21722 0.96472 0.92866 1.04081 1.21353 0.79294 0.99271 1.00456 1.45662 1.07217 1.07778 1.76651 1.18618 0.88108 0.83837 0.76063 1.90926 1.70722 1.33121 1.50400 1.19321 0.92059 0.92913 1.20795 1.21323 0.95146 0.94935 0.93357 1.21192 0.93431 0.98853 1.08386 1.21444 1.00976 0.91030 0.92375 1.21304 0.92528 1.00649 1.13276 1.20119 0.92217 0.86965 0.91511 1.84185 1.35689 1.11702 1.77642 1.22018 0.91987 0.83259 1.53259 0.87558 1.26786 0.97392 1.02498 0.95534 1.70320 1.10358 1.26861 1.46655 0.84614 0.77095 0.74088 0.80099 1.17732 1.19793 1.17795 0.93011 0.92986 0.91882 0.91277 0.91303 0.92297 0.92252 0.89733 0.89772 0.93905 0.93814 0.74918 0.82069 0.81699 0.82796 0.85900 0.92027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.04 9.91 71.98 0.71 -1.33 16 2 C -0.12 -1.60 5.93 30.59 0.18 -1.42 16 3 C -0.12 -2.07 5.21 30.59 0.16 -1.91 16 4 C -0.11 -2.07 5.33 30.59 0.16 -1.91 16 5 C 0.12 3.56 5.67 86.38 0.49 4.05 16 6 N -0.72 -23.19 5.51 -466.29 -2.57 -25.76 16 7 C 0.54 25.42 7.76 86.69 0.67 26.09 16 8 O -0.57 -34.86 15.17 16.88 0.26 -34.61 16 9 C -0.25 -10.88 5.89 -19.99 -0.12 -11.00 16 10 C -0.03 -0.88 9.54 22.52 0.21 -0.67 16 11 C -0.20 -5.33 10.03 22.25 0.22 -5.10 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.26 -11.17 9.16 22.36 0.20 -10.97 16 14 C 0.15 7.72 6.66 22.91 0.15 7.87 16 15 O -0.19 -12.30 7.84 0.74 0.01 -12.30 16 16 C -0.43 -26.38 9.49 67.93 0.64 -25.74 16 17 H 0.11 5.83 5.21 -2.91 -0.02 5.82 16 18 C -0.02 -1.38 5.49 84.85 0.47 -0.92 16 19 N -0.91 -60.15 13.67 21.62 0.30 -59.86 16 20 Si 1.02 44.73 29.55 68.60 2.03 46.75 16 21 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 25 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.41 9.38 6.50 -92.71 -0.60 8.78 16 36 H 0.16 3.20 6.40 -2.91 -0.02 3.18 16 37 H 0.17 2.79 8.06 -2.91 -0.02 2.77 16 38 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 39 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -88.23 336.89 4.85 -83.38 By element: Atomic # 1 Polarization: 25.94 SS G_CDS: 0.44 Total: 26.38 kcal Atomic # 6 Polarization: -28.38 SS G_CDS: 4.39 Total: -23.99 kcal Atomic # 7 Polarization: -83.34 SS G_CDS: -2.27 Total: -85.62 kcal Atomic # 8 Polarization: -47.17 SS G_CDS: 0.26 Total: -46.90 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Total: -88.23 4.85 -83.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194041901.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.706 kcal (2) G-P(sol) polarization free energy of solvation -88.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds