Wall clock time and date at job start Mon Mar 30 2020 01:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.46922 * 2 1 4 4 C 1.53000 * 109.47497 * 120.00174 * 2 1 3 5 5 C 1.52997 * 109.47229 * 174.99888 * 4 2 1 6 6 N 1.46499 * 109.47058 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 5 4 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 5 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.08998 * 109.47239 * 300.00078 * 1 2 3 25 25 H 1.09004 * 109.47331 * 59.99944 * 1 2 3 26 26 H 1.09000 * 109.47195 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46992 * 240.00375 * 2 1 3 28 28 H 1.09004 * 109.46599 * 180.02562 * 3 2 1 29 29 H 1.08994 * 109.47397 * 299.99664 * 3 2 1 30 30 H 1.09001 * 109.46981 * 60.00368 * 3 2 1 31 31 H 1.09004 * 109.46986 * 54.99769 * 4 2 1 32 32 H 1.09000 * 109.46715 * 295.00315 * 4 2 1 33 33 H 1.08999 * 109.46796 * 60.00185 * 5 4 2 34 34 H 1.08995 * 109.47178 * 299.99712 * 5 4 2 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 5 4 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5648 -0.8310 1.1878 6 7 4.0533 -1.5211 2.3842 7 6 5.3742 -1.7326 2.5483 8 8 6.1606 -1.3502 1.7034 9 6 5.8661 -2.4270 3.7534 10 6 4.9665 -2.8676 4.7267 11 6 5.4322 -3.5162 5.8501 12 6 6.7903 -3.7336 6.0199 13 6 7.6911 -3.3030 5.0670 14 6 7.2400 -2.6482 3.9289 15 8 8.1229 -2.2250 2.9918 16 6 9.4330 -2.3662 3.2772 17 1 9.7372 -2.8740 4.1805 18 6 10.3900 -1.8592 2.4107 19 7 10.0196 -1.2413 1.3105 20 14 12.2052 -2.0555 2.8059 21 1 12.5375 -3.4995 2.9023 22 1 13.0163 -1.4311 1.7299 23 1 12.5048 -1.3910 4.0996 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4425 -0.0005 29 1 1.6766 1.9563 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6054 -1.7198 1.2951 32 1 1.7516 -0.1583 2.1369 33 1 3.9994 0.1675 1.1420 34 1 3.8531 -1.3940 0.3002 35 1 3.4259 -1.8259 3.0585 36 1 3.9068 -2.7044 4.5970 37 1 4.7355 -3.8559 6.6021 38 1 7.1459 -4.2424 6.9036 39 1 8.7480 -3.4758 5.2067 40 1 10.6888 -0.8864 0.7047 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194057601.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:33 Heat of formation + Delta-G solvation = -77.502163 kcal Electronic energy + Delta-G solvation = -21083.245200 eV Core-core repulsion = 17862.266113 eV Total energy + Delta-G solvation = -3220.979088 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.27893 -39.87865 -38.06401 -37.82353 -35.21480 -34.32284 -32.30580 -30.57084 -29.79701 -28.01480 -27.36787 -25.14561 -23.80871 -22.85091 -21.67656 -20.76273 -19.84862 -19.18912 -17.82877 -17.08747 -16.69000 -16.34563 -15.95769 -15.91879 -15.72254 -15.35167 -15.27987 -14.71833 -14.58979 -14.28259 -14.20649 -13.63786 -13.54568 -13.05432 -12.99562 -12.72795 -12.64865 -12.51118 -12.39955 -12.35586 -12.15018 -11.77931 -11.58755 -11.50846 -11.42217 -10.82544 -10.60236 -10.09197 -9.76999 -9.03456 -8.44493 -6.15960 0.12732 0.73229 1.31947 1.45225 1.50135 2.10132 2.16150 2.30271 2.87868 3.22877 3.47312 3.83275 3.92414 3.97014 4.07444 4.10234 4.29608 4.31822 4.47494 4.52472 4.61991 4.69215 4.77873 4.83273 4.96792 4.98073 5.01799 5.07147 5.10718 5.13535 5.15210 5.32631 5.46194 5.48734 5.50254 5.58124 5.61731 5.69896 5.96033 6.17686 6.72179 6.94464 7.49745 7.80637 8.75969 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017551 B = 0.004411 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.924957 B = 6346.641360 C = 7833.376521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.154 4.154 4 C -0.111 4.111 5 C 0.120 3.880 6 N -0.718 5.718 7 C 0.544 3.456 8 O -0.572 6.572 9 C -0.247 4.247 10 C -0.029 4.029 11 C -0.200 4.200 12 C -0.040 4.040 13 C -0.259 4.259 14 C 0.148 3.852 15 O -0.190 6.190 16 C -0.430 4.430 17 H 0.107 0.893 18 C -0.022 4.022 19 N -0.906 5.906 20 Si 1.023 2.977 21 H -0.253 1.253 22 H -0.273 1.273 23 H -0.254 1.254 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.412 0.588 36 H 0.162 0.838 37 H 0.166 0.834 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.941 -1.437 6.127 19.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.114 4.114 3 C -0.211 4.211 4 C -0.149 4.149 5 C -0.004 4.004 6 N -0.373 5.373 7 C 0.334 3.666 8 O -0.452 6.452 9 C -0.252 4.252 10 C -0.048 4.048 11 C -0.219 4.219 12 C -0.058 4.058 13 C -0.278 4.278 14 C 0.093 3.907 15 O -0.093 6.093 16 C -0.506 4.506 17 H 0.124 0.876 18 C -0.221 4.221 19 N -0.542 5.542 20 Si 0.841 3.159 21 H -0.177 1.177 22 H -0.198 1.198 23 H -0.178 1.178 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.060 0.940 35 H 0.250 0.750 36 H 0.179 0.821 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.333 -0.934 5.075 18.085 hybrid contribution 1.107 0.035 -0.156 1.118 sum -16.227 -0.899 4.919 16.980 Atomic orbital electron populations 1.21781 0.93188 1.02383 1.02403 1.21054 0.97100 0.95903 0.97360 1.21938 1.00317 0.96400 1.02442 1.21801 0.90858 1.02468 0.99754 1.21405 0.96122 0.95939 0.86939 1.45666 1.06046 1.60963 1.24620 1.18610 0.82797 0.78993 0.86207 1.90926 1.56653 1.52124 1.45450 1.19331 0.91461 1.14310 1.00057 1.21321 0.98822 0.93243 0.91377 1.21191 0.95575 1.05374 0.99721 1.21444 0.93345 0.94105 0.96927 1.21305 1.01462 1.08188 0.96826 1.20105 0.90319 0.91381 0.88895 1.84184 1.16324 1.70627 1.38116 1.22024 0.79252 1.39405 1.09927 0.87558 1.26781 1.05799 0.94964 0.94598 1.70321 1.36489 1.35463 1.11896 0.84616 0.72911 0.79707 0.78674 1.17733 1.19780 1.17793 0.91911 0.92180 0.91947 0.91705 0.94342 0.91900 0.91895 0.89629 0.89790 0.93584 0.93994 0.74965 0.82090 0.81698 0.82790 0.85904 0.92034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.19 71.98 0.66 -1.14 16 2 C -0.10 -1.67 2.92 -10.80 -0.03 -1.70 16 3 C -0.15 -2.94 8.95 71.98 0.64 -2.29 16 4 C -0.11 -2.07 4.80 30.59 0.15 -1.92 16 5 C 0.12 3.58 5.43 86.38 0.47 4.05 16 6 N -0.72 -23.31 5.51 -466.29 -2.57 -25.88 16 7 C 0.54 25.48 7.76 86.69 0.67 26.15 16 8 O -0.57 -34.89 15.17 16.88 0.26 -34.64 16 9 C -0.25 -10.94 5.89 -19.99 -0.12 -11.06 16 10 C -0.03 -0.89 9.54 22.52 0.21 -0.67 16 11 C -0.20 -5.34 10.03 22.25 0.22 -5.12 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.03 16 13 C -0.26 -11.20 9.16 22.36 0.20 -10.99 16 14 C 0.15 7.78 6.66 22.91 0.15 7.94 16 15 O -0.19 -12.34 7.84 0.74 0.01 -12.33 16 16 C -0.43 -26.47 9.49 67.93 0.64 -25.83 16 17 H 0.11 5.84 5.21 -2.91 -0.02 5.83 16 18 C -0.02 -1.34 5.49 84.85 0.47 -0.88 16 19 N -0.91 -60.15 13.67 21.62 0.30 -59.85 16 20 Si 1.02 44.73 29.55 68.60 2.03 46.76 16 21 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.04 0.91 6.57 -2.38 -0.02 0.89 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.57 6.57 -2.39 -0.02 1.56 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.41 9.46 6.50 -92.71 -0.60 8.85 16 36 H 0.16 3.22 6.40 -2.91 -0.02 3.20 16 37 H 0.17 2.80 8.06 -2.91 -0.02 2.78 16 38 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 40 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -88.32 332.96 5.04 -83.29 By element: Atomic # 1 Polarization: 26.70 SS G_CDS: 0.44 Total: 27.15 kcal Atomic # 6 Polarization: -29.06 SS G_CDS: 4.57 Total: -24.49 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.27 Total: -85.73 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: 0.26 Total: -46.97 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -88.32 5.04 -83.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194057601.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.784 kcal (2) G-P(sol) polarization free energy of solvation -88.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds