Wall clock time and date at job start Mon Mar 30 2020 01:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47222 * 175.00099 * 3 2 1 5 5 C 1.52996 * 109.47271 * 184.99589 * 4 3 2 6 6 N 1.46499 * 109.47069 * 295.00129 * 3 2 1 7 7 C 1.34776 * 120.00532 * 154.99955 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.09008 * 109.46623 * 300.00004 * 1 2 3 25 25 H 1.08996 * 109.47437 * 59.99690 * 1 2 3 26 26 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47014 * 239.99852 * 2 1 3 28 28 H 1.08995 * 109.47477 * 119.99754 * 2 1 3 29 29 H 1.08994 * 109.47467 * 54.99941 * 3 2 1 30 30 H 1.08994 * 109.47482 * 305.00492 * 4 3 2 31 31 H 1.09007 * 109.46770 * 64.99614 * 4 3 2 32 32 H 1.08999 * 109.46835 * 60.00289 * 5 4 3 33 33 H 1.09000 * 109.47110 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47283 * 300.00070 * 5 4 3 35 35 H 0.97003 * 120.00039 * 335.00336 * 6 3 2 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8850 0.2510 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2997 8 8 1.7333 4.1046 -0.3039 9 6 1.1358 4.0980 -2.5604 10 6 0.8967 3.3368 -3.7068 11 6 0.5324 3.9590 -4.8815 12 6 0.4022 5.3377 -4.9317 13 6 0.6363 6.1029 -3.8072 14 6 1.0038 5.4934 -2.6152 15 8 1.2335 6.2430 -1.5097 16 6 1.2021 7.5822 -1.6610 17 1 0.9203 8.0119 -2.6109 18 6 1.5317 8.4083 -0.5966 19 7 1.8744 7.8850 0.5603 20 14 1.4875 10.2639 -0.8060 21 1 0.1134 10.6877 -1.1768 22 1 1.8797 10.9155 0.4696 23 1 2.4349 10.6639 -1.8772 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.6055 1.9816 0.8417 30 1 3.8571 0.8800 1.0112 31 1 4.0029 0.9835 -0.7597 32 1 3.6264 3.3457 1.1364 33 1 5.1509 2.8863 0.3401 34 1 3.7723 3.4493 -0.6346 35 1 1.4870 1.5661 -2.0463 36 1 0.9926 2.2617 -3.6716 37 1 0.3483 3.3692 -5.7672 38 1 0.1167 5.8164 -5.8568 39 1 0.5332 7.1769 -3.8545 40 1 2.1053 8.4626 1.3045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194077949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:37 Heat of formation + Delta-G solvation = -48.430089 kcal Electronic energy + Delta-G solvation = -22005.609455 eV Core-core repulsion = 18785.891027 eV Total energy + Delta-G solvation = -3219.718428 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.72491 -38.44305 -36.36800 -35.86347 -32.33971 -32.10509 -31.83809 -30.01582 -28.88635 -26.17013 -25.32087 -23.14278 -21.80169 -21.54767 -20.43418 -19.82960 -17.99812 -17.44868 -16.18936 -15.90088 -14.92879 -14.61470 -14.42131 -14.16190 -13.86983 -13.81585 -13.67246 -13.42113 -12.87819 -12.78181 -12.50425 -12.35046 -12.03406 -11.69490 -11.42041 -11.27234 -11.14343 -10.99875 -10.86590 -10.86396 -10.78639 -10.48866 -10.43287 -10.40131 -9.52912 -8.85478 -8.74115 -8.36737 -8.23519 -7.28137 -6.42131 -4.01941 1.75497 2.34363 3.12929 3.14955 3.17248 3.79312 3.81713 3.95395 4.67485 4.79506 5.08759 5.12424 5.14082 5.21308 5.47456 5.50173 5.54828 5.62371 5.65329 5.75396 5.81292 5.94905 5.98034 6.05032 6.14692 6.19411 6.25044 6.36029 6.38937 6.58618 6.61673 6.72661 6.93543 7.01054 7.08397 7.13554 7.26771 7.31629 7.72135 7.94714 8.23070 8.97575 9.20124 9.70238 10.71492 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.005966 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.650272 B = 4692.379616 C = 5884.213376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.129 4.129 3 C 0.147 3.853 4 C -0.130 4.130 5 C -0.145 4.145 6 N -0.737 5.737 7 C 0.554 3.446 8 O -0.495 6.495 9 C -0.227 4.227 10 C -0.039 4.039 11 C -0.232 4.232 12 C -0.052 4.052 13 C -0.239 4.239 14 C 0.189 3.811 15 O -0.123 6.123 16 C -0.404 4.404 17 H 0.092 0.908 18 C 0.045 3.955 19 N -0.832 5.832 20 Si 0.939 3.061 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.389 0.611 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.504 -12.224 -4.852 13.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.167 4.167 3 C 0.042 3.958 4 C -0.169 4.169 5 C -0.203 4.203 6 N -0.392 5.392 7 C 0.343 3.657 8 O -0.369 6.369 9 C -0.231 4.231 10 C -0.058 4.058 11 C -0.251 4.251 12 C -0.070 4.070 13 C -0.258 4.258 14 C 0.129 3.871 15 O -0.021 6.021 16 C -0.480 4.480 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.463 5.463 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.074 0.926 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.223 0.777 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.148 0.852 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.218 -11.659 -3.551 12.190 hybrid contribution -0.123 0.655 -0.713 0.976 sum -0.341 -11.004 -4.264 11.806 Atomic orbital electron populations 1.21763 0.95460 1.01096 1.02615 1.21802 0.96464 0.96026 1.02395 1.20939 0.94152 0.92257 0.88482 1.21952 0.95596 0.98347 1.01011 1.21798 0.98833 0.95561 1.04069 1.45950 1.73540 1.07155 1.12574 1.18154 0.77533 0.81333 0.88680 1.90951 1.47436 1.63198 1.35336 1.18913 1.18191 0.91384 0.94648 1.20764 0.95471 0.97667 0.91914 1.20455 1.12249 0.94607 0.97756 1.20884 0.95464 0.93743 0.96950 1.21155 1.10551 1.00859 0.93264 1.19284 0.90755 0.90091 0.86951 1.84177 1.72512 1.18412 1.26994 1.21431 1.48445 0.78324 0.99792 0.89030 1.25360 0.95954 1.00405 0.94521 1.70113 1.38819 1.36042 1.01374 0.85818 0.79126 0.80516 0.78175 1.19404 1.20184 1.19408 0.92578 0.92343 0.93021 0.91796 0.90906 0.89564 0.92010 0.92505 0.91960 0.94355 0.91731 0.77658 0.87132 0.87374 0.87273 0.85156 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.80 37.16 0.36 -1.26 16 2 C -0.13 -1.36 5.47 -26.73 -0.15 -1.50 16 3 C 0.15 2.11 2.26 -67.93 -0.15 1.95 16 4 C -0.13 -1.83 5.61 -26.73 -0.15 -1.98 16 5 C -0.15 -2.62 8.51 37.16 0.32 -2.30 16 6 N -0.74 -11.72 4.43 -54.85 -0.24 -11.96 16 7 C 0.55 11.88 6.33 -12.47 -0.08 11.81 16 8 O -0.50 -13.02 12.30 -16.57 -0.20 -13.22 16 9 C -0.23 -4.90 5.89 -104.81 -0.62 -5.51 16 10 C -0.04 -0.67 9.54 -39.20 -0.37 -1.05 16 11 C -0.23 -3.82 10.03 -39.61 -0.40 -4.22 16 12 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 13 C -0.24 -5.17 9.16 -39.44 -0.36 -5.53 16 14 C 0.19 4.69 6.66 -38.60 -0.26 4.43 16 15 O -0.12 -3.61 7.84 -21.08 -0.17 -3.77 16 16 C -0.40 -11.44 9.49 30.90 0.29 -11.15 16 17 H 0.09 2.36 5.21 -52.49 -0.27 2.08 16 18 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16 19 N -0.83 -25.04 13.67 55.48 0.76 -24.28 16 20 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.06 0.65 8.14 -51.92 -0.42 0.23 16 25 H 0.06 0.67 7.75 -51.93 -0.40 0.26 16 26 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.06 1.25 7.84 -51.93 -0.41 0.84 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 1.37 5.64 -51.93 -0.29 1.08 16 35 H 0.39 5.06 6.63 -40.82 -0.27 4.79 16 36 H 0.11 1.47 6.40 -52.49 -0.34 1.13 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.78 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 LS Contribution 327.48 15.07 4.94 4.94 Total: -1.00 -33.09 327.48 -7.61 -40.70 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.61 Total: 8.49 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: -2.05 Total: -16.46 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.52 Total: -36.24 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -0.37 Total: -17.00 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.09 -7.61 -40.70 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194077949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.733 kcal (2) G-P(sol) polarization free energy of solvation -33.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds