Wall clock time and date at job start Mon Mar 30 2020 01:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47178 * 2 1 4 4 C 1.52999 * 109.47222 * 175.00099 * 3 2 1 5 5 C 1.52996 * 109.47271 * 184.99589 * 4 3 2 6 6 N 1.46499 * 109.47069 * 295.00129 * 3 2 1 7 7 C 1.34776 * 120.00532 * 154.99955 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.09008 * 109.46623 * 300.00004 * 1 2 3 25 25 H 1.08996 * 109.47437 * 59.99690 * 1 2 3 26 26 H 1.09000 * 109.47397 * 180.02562 * 1 2 3 27 27 H 1.08996 * 109.47014 * 239.99852 * 2 1 3 28 28 H 1.08995 * 109.47477 * 119.99754 * 2 1 3 29 29 H 1.08994 * 109.47467 * 54.99941 * 3 2 1 30 30 H 1.08994 * 109.47482 * 305.00492 * 4 3 2 31 31 H 1.09007 * 109.46770 * 64.99614 * 4 3 2 32 32 H 1.08999 * 109.46835 * 60.00289 * 5 4 3 33 33 H 1.09000 * 109.47110 * 180.02562 * 5 4 3 34 34 H 1.09003 * 109.47283 * 300.00070 * 5 4 3 35 35 H 0.97003 * 120.00039 * 335.00336 * 6 3 2 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5648 1.4443 0.1257 5 6 4.0645 2.8850 0.2510 6 7 1.6524 2.0975 -1.2518 7 6 1.5256 3.4384 -1.2997 8 8 1.7333 4.1046 -0.3039 9 6 1.1358 4.0980 -2.5604 10 6 0.8967 3.3368 -3.7068 11 6 0.5324 3.9590 -4.8815 12 6 0.4022 5.3377 -4.9317 13 6 0.6363 6.1029 -3.8072 14 6 1.0038 5.4934 -2.6152 15 8 1.2335 6.2430 -1.5097 16 6 1.2021 7.5822 -1.6610 17 1 0.9203 8.0119 -2.6109 18 6 1.5317 8.4083 -0.5966 19 7 1.8744 7.8850 0.5603 20 14 1.4875 10.2639 -0.8060 21 1 0.1134 10.6877 -1.1768 22 1 1.8797 10.9155 0.4696 23 1 2.4349 10.6639 -1.8772 24 1 -0.3633 0.5139 0.8901 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8899 29 1 1.6055 1.9816 0.8417 30 1 3.8571 0.8800 1.0112 31 1 4.0029 0.9835 -0.7597 32 1 3.6264 3.3457 1.1364 33 1 5.1509 2.8863 0.3401 34 1 3.7723 3.4493 -0.6346 35 1 1.4870 1.5661 -2.0463 36 1 0.9926 2.2617 -3.6716 37 1 0.3483 3.3692 -5.7672 38 1 0.1167 5.8164 -5.8568 39 1 0.5332 7.1769 -3.8545 40 1 2.1053 8.4626 1.3045 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194077949.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:36 Heat of formation + Delta-G solvation = -70.453320 kcal Electronic energy + Delta-G solvation = -22006.564454 eV Core-core repulsion = 18785.891027 eV Total energy + Delta-G solvation = -3220.673427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.34938 -40.06949 -38.04664 -37.31061 -34.32357 -33.63325 -32.93556 -31.52161 -30.54053 -27.55579 -27.16994 -24.68539 -23.19184 -22.87033 -21.76012 -21.36390 -19.81856 -19.12500 -17.82556 -17.32199 -16.49425 -16.28825 -16.05741 -15.71627 -15.43210 -15.33792 -14.88907 -14.75390 -14.41081 -14.22357 -14.05152 -13.79946 -13.54053 -13.25435 -12.96267 -12.68466 -12.53604 -12.46199 -12.34932 -12.22848 -12.15050 -11.85720 -11.73471 -11.55901 -11.37532 -10.81631 -10.45961 -9.91421 -9.71576 -9.01373 -8.43386 -6.14111 0.16695 0.74443 1.31460 1.44380 1.49114 2.16026 2.19807 2.40564 2.89902 3.25626 3.49508 3.72763 4.02349 4.09643 4.11680 4.17164 4.30557 4.36271 4.50122 4.54022 4.56785 4.65946 4.75076 4.95649 4.99444 5.00957 5.06065 5.08708 5.11858 5.15988 5.16544 5.28674 5.44270 5.49376 5.51190 5.63404 5.70965 5.78347 5.97150 6.18892 6.82950 6.95882 7.63563 7.82445 8.76622 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016422 B = 0.005966 C = 0.004757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.650272 B = 4692.379616 C = 5884.213376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C 0.141 3.859 4 C -0.121 4.121 5 C -0.141 4.141 6 N -0.711 5.711 7 C 0.547 3.453 8 O -0.556 6.556 9 C -0.244 4.244 10 C -0.031 4.031 11 C -0.202 4.202 12 C -0.043 4.043 13 C -0.260 4.260 14 C 0.148 3.852 15 O -0.187 6.187 16 C -0.428 4.428 17 H 0.104 0.896 18 C -0.021 4.021 19 N -0.904 5.904 20 Si 1.020 2.980 21 H -0.254 1.254 22 H -0.273 1.273 23 H -0.255 1.255 24 H 0.035 0.965 25 H 0.049 0.951 26 H 0.077 0.923 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.047 0.953 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.025 0.975 33 H 0.054 0.946 34 H 0.025 0.975 35 H 0.408 0.592 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.152 0.848 39 H 0.121 0.879 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.947 -15.497 -8.678 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.154 4.154 3 C 0.037 3.963 4 C -0.160 4.160 5 C -0.198 4.198 6 N -0.367 5.367 7 C 0.337 3.663 8 O -0.434 6.434 9 C -0.249 4.249 10 C -0.050 4.050 11 C -0.220 4.220 12 C -0.061 4.061 13 C -0.279 4.279 14 C 0.092 3.908 15 O -0.089 6.089 16 C -0.504 4.504 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.539 5.539 20 Si 0.838 3.162 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.054 0.946 25 H 0.068 0.932 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.044 0.956 33 H 0.073 0.927 34 H 0.044 0.956 35 H 0.246 0.754 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.139 0.861 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.684 -15.026 -7.470 16.794 hybrid contribution -0.050 1.300 0.160 1.311 sum -0.734 -13.726 -7.310 15.568 Atomic orbital electron populations 1.21780 0.95708 1.02312 1.01268 1.21762 0.96107 0.92754 1.04762 1.21113 0.94589 0.94295 0.86319 1.21923 0.94994 0.95535 1.03507 1.21709 0.99684 0.97942 1.00483 1.45712 1.71614 1.05304 1.14030 1.18393 0.76979 0.82895 0.88042 1.90944 1.50152 1.64982 1.37366 1.19411 1.18152 0.90846 0.96495 1.21312 0.93500 0.99838 0.90328 1.21168 1.07581 0.94312 0.98928 1.21410 0.93237 0.94573 0.96873 1.21298 1.11761 1.01086 0.93790 1.20099 0.91529 0.91603 0.87519 1.84183 1.76514 1.18803 1.29438 1.21960 1.48838 0.78993 1.00581 0.87850 1.26718 0.95321 1.06169 0.93839 1.70316 1.42830 1.38026 1.02762 0.84653 0.79942 0.73121 0.78436 1.17834 1.19809 1.17917 0.94566 0.93194 0.90440 0.88916 0.88915 0.93513 0.89184 0.89958 0.95621 0.92740 0.95572 0.75427 0.82266 0.81936 0.83039 0.86107 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.80 71.98 0.71 -2.19 16 2 C -0.12 -2.04 5.47 30.59 0.17 -1.87 16 3 C 0.14 3.96 2.26 44.99 0.10 4.07 16 4 C -0.12 -3.23 5.61 30.59 0.17 -3.06 16 5 C -0.14 -5.36 8.51 71.98 0.61 -4.75 16 6 N -0.71 -21.99 4.43 -445.71 -1.98 -23.97 16 7 C 0.55 24.54 6.33 86.69 0.55 25.09 16 8 O -0.56 -32.10 12.30 16.88 0.21 -31.89 16 9 C -0.24 -10.66 5.89 -19.99 -0.12 -10.78 16 10 C -0.03 -0.95 9.54 22.52 0.21 -0.74 16 11 C -0.20 -5.46 10.03 22.25 0.22 -5.23 16 12 C -0.04 -1.36 10.03 22.30 0.22 -1.14 16 13 C -0.26 -11.33 9.16 22.36 0.20 -11.12 16 14 C 0.15 7.70 6.66 22.91 0.15 7.85 16 15 O -0.19 -12.00 7.84 0.74 0.01 -11.99 16 16 C -0.43 -26.21 9.49 67.93 0.64 -25.56 16 17 H 0.10 5.70 5.21 -2.91 -0.02 5.69 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.81 16 19 N -0.90 -59.65 13.67 21.62 0.30 -59.36 16 20 Si 1.02 44.85 29.55 68.60 2.03 46.88 16 21 H -0.25 -10.38 7.11 99.48 0.71 -9.67 16 22 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 23 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 24 H 0.04 0.82 8.14 -2.38 -0.02 0.80 16 25 H 0.05 1.01 7.75 -2.39 -0.02 0.99 16 26 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.05 1.71 7.58 -2.39 -0.02 1.69 16 30 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 32 H 0.02 1.12 7.84 -2.39 -0.02 1.10 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.03 1.17 5.64 -2.39 -0.01 1.16 16 35 H 0.41 9.17 6.63 -92.71 -0.61 8.55 16 36 H 0.16 3.22 6.40 -2.91 -0.02 3.21 16 37 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 39 H 0.12 5.35 5.64 -2.91 -0.02 5.34 16 40 H 0.27 16.37 8.31 -92.71 -0.77 15.60 16 Total: -1.00 -86.64 327.48 5.31 -81.32 By element: Atomic # 1 Polarization: 28.82 SS G_CDS: 0.43 Total: 29.25 kcal Atomic # 6 Polarization: -34.56 SS G_CDS: 4.32 Total: -30.24 kcal Atomic # 7 Polarization: -81.64 SS G_CDS: -1.68 Total: -83.32 kcal Atomic # 8 Polarization: -44.09 SS G_CDS: 0.21 Total: -43.88 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Total: -86.64 5.31 -81.32 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194077949.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.868 kcal (2) G-P(sol) polarization free energy of solvation -86.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds