Wall clock time and date at job start Mon Mar 30 2020 01:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47032 * 60.00180 * 3 2 1 5 5 C 1.52998 * 109.47139 * 299.99728 * 3 2 1 6 6 N 1.46499 * 109.47058 * 179.97438 * 3 2 1 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.08996 * 109.47130 * 300.00405 * 1 2 3 25 25 H 1.09003 * 109.47208 * 59.99572 * 1 2 3 26 26 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46986 * 239.99881 * 2 1 3 28 28 H 1.09000 * 109.46715 * 120.00427 * 2 1 3 29 29 H 1.09000 * 109.47286 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.46975 * 299.99777 * 4 3 2 31 31 H 1.09003 * 109.46921 * 59.99868 * 4 3 2 32 32 H 1.08991 * 109.47344 * 299.99945 * 5 3 2 33 33 H 1.09004 * 109.46805 * 60.00901 * 5 3 2 34 34 H 1.09000 * 109.46843 * 179.97438 * 5 3 2 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 3 2 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5301 2.1637 -1.2493 6 7 3.5050 1.4424 0.0006 7 6 4.1790 2.6095 0.0012 8 8 3.5711 3.6626 0.0018 9 6 5.6543 2.6095 0.0024 10 6 6.3567 1.4023 0.0024 11 6 7.7351 1.4089 0.0030 12 6 8.4289 2.6084 0.0041 13 6 7.7482 3.8091 0.0053 14 6 6.3599 3.8217 0.0043 15 8 5.6897 4.9997 0.0049 16 6 6.4260 6.1227 0.1238 17 1 7.5044 6.0633 0.1305 18 6 5.7986 7.3545 0.2373 19 7 4.4855 7.4270 0.2286 20 14 6.8189 8.9106 0.4013 21 1 7.6893 9.0601 -0.7926 22 1 5.9165 10.0854 0.5068 23 1 7.6619 8.8237 1.6207 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8938 3.1912 1.2495 30 1 0.4401 2.1637 1.2492 31 1 1.8934 1.6498 2.1392 32 1 1.8934 1.6499 -2.1392 33 1 0.4400 2.1638 -1.2492 34 1 1.8931 3.1915 -1.2490 35 1 3.9900 0.6023 0.0006 36 1 5.8206 0.4648 -0.0029 37 1 8.2768 0.4747 0.0033 38 1 9.5088 2.6037 0.0050 39 1 8.2961 4.7398 0.0066 40 1 4.0467 8.2883 0.3084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194081143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:40 Heat of formation + Delta-G solvation = -41.549484 kcal Electronic energy + Delta-G solvation = -21961.834270 eV Core-core repulsion = 18742.414208 eV Total energy + Delta-G solvation = -3219.420062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.82323 -38.61359 -36.48417 -36.11635 -32.51851 -32.28991 -30.52683 -29.03161 -28.79470 -26.94284 -25.38841 -24.51431 -22.86750 -21.45161 -19.88523 -18.92926 -17.96976 -17.53243 -16.20463 -15.60725 -14.71085 -14.68108 -14.40198 -14.26126 -14.19054 -13.75612 -13.54733 -13.43907 -12.83670 -12.65792 -12.47239 -12.16403 -12.03425 -11.69628 -11.49875 -11.42534 -11.23609 -11.07042 -10.99147 -10.87162 -10.79084 -10.60807 -10.47466 -10.42962 -9.50325 -8.85486 -8.59325 -8.44063 -8.23615 -7.28083 -6.42281 -4.02065 1.75473 2.34483 3.12930 3.14981 3.17259 3.73529 3.80986 3.95392 4.67432 4.83860 4.99171 5.09606 5.19775 5.23043 5.42906 5.49634 5.52077 5.56060 5.64515 5.77295 5.88782 5.95323 6.02529 6.04552 6.09552 6.14304 6.19564 6.28935 6.31169 6.59090 6.71665 6.77029 6.79911 6.95959 7.08480 7.18314 7.26950 7.31760 7.72242 7.94845 8.25419 8.97507 9.20648 9.70257 10.71463 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.005719 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.351303 B = 4895.186393 C = 6319.054308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.124 4.124 3 C 0.179 3.821 4 C -0.165 4.165 5 C -0.165 4.165 6 N -0.738 5.738 7 C 0.557 3.443 8 O -0.497 6.497 9 C -0.227 4.227 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.052 4.052 13 C -0.239 4.239 14 C 0.189 3.811 15 O -0.123 6.123 16 C -0.404 4.404 17 H 0.093 0.907 18 C 0.045 3.955 19 N -0.833 5.833 20 Si 0.940 3.060 21 H -0.269 1.269 22 H -0.277 1.277 23 H -0.269 1.269 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.083 0.917 35 H 0.389 0.611 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.131 0.869 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.974 -13.018 -0.219 13.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C 0.093 3.907 4 C -0.223 4.223 5 C -0.223 4.223 6 N -0.394 5.394 7 C 0.346 3.654 8 O -0.371 6.371 9 C -0.232 4.232 10 C -0.058 4.058 11 C -0.251 4.251 12 C -0.070 4.070 13 C -0.258 4.258 14 C 0.129 3.871 15 O -0.021 6.021 16 C -0.480 4.480 17 H 0.110 0.890 18 C -0.162 4.162 19 N -0.464 5.464 20 Si 0.764 3.236 21 H -0.194 1.194 22 H -0.202 1.202 23 H -0.194 1.194 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.223 0.777 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.904 -11.921 -0.223 12.271 hybrid contribution 0.973 0.200 0.078 0.996 sum -1.931 -11.720 -0.145 11.879 Atomic orbital electron populations 1.21846 0.94981 1.01457 1.02603 1.21757 0.96772 0.95625 1.02068 1.20149 0.80010 0.94572 0.95972 1.22280 1.00382 1.03455 0.96211 1.22275 1.00401 1.03404 0.96219 1.46057 1.05857 1.08512 1.78928 1.18161 0.87184 0.83429 0.76624 1.90874 1.69013 1.30340 1.46856 1.18928 0.92168 0.91800 1.20267 1.20768 0.94194 0.95214 0.95641 1.20457 0.93797 0.97217 1.13583 1.20886 0.98641 0.92277 0.95237 1.21153 0.93839 0.98777 1.12032 1.19284 0.90171 0.86939 0.90669 1.84176 1.34053 1.10285 1.73611 1.21439 0.91127 0.82599 1.52848 0.89013 1.25361 0.96094 0.98585 0.96197 1.70112 1.07743 1.26075 1.42488 0.85814 0.78932 0.79622 0.79243 1.19399 1.20178 1.19404 0.92099 0.92112 0.92840 0.91689 0.91682 0.89718 0.92310 0.93236 0.93235 0.92299 0.89769 0.77661 0.87112 0.87357 0.87256 0.85143 0.91867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 9.21 37.16 0.34 -1.10 16 2 C -0.12 -1.35 5.10 -26.73 -0.14 -1.49 16 3 C 0.18 2.64 0.83 -131.82 -0.11 2.53 16 4 C -0.17 -2.62 8.05 37.16 0.30 -2.33 16 5 C -0.17 -2.60 8.05 37.16 0.30 -2.30 16 6 N -0.74 -12.11 5.06 -48.64 -0.25 -12.36 16 7 C 0.56 12.13 7.18 -12.47 -0.09 12.04 16 8 O -0.50 -13.12 11.37 -16.57 -0.19 -13.31 16 9 C -0.23 -4.95 5.89 -104.81 -0.62 -5.57 16 10 C -0.04 -0.68 9.54 -39.20 -0.37 -1.06 16 11 C -0.23 -3.84 10.03 -39.61 -0.40 -4.24 16 12 C -0.05 -0.93 10.03 -39.54 -0.40 -1.32 16 13 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 14 C 0.19 4.72 6.66 -38.60 -0.26 4.46 16 15 O -0.12 -3.63 7.84 -21.08 -0.17 -3.80 16 16 C -0.40 -11.47 9.49 30.90 0.29 -11.18 16 17 H 0.09 2.37 5.21 -52.49 -0.27 2.09 16 18 C 0.05 1.27 5.49 -17.51 -0.10 1.17 16 19 N -0.83 -25.07 13.67 55.48 0.76 -24.31 16 20 Si 0.94 20.59 29.55 -169.99 -5.02 15.57 16 21 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H 0.06 0.59 6.43 -51.93 -0.33 0.25 16 25 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.72 6.16 -51.93 -0.32 1.40 16 30 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 34 H 0.08 1.69 6.17 -51.93 -0.32 1.37 16 35 H 0.39 5.20 6.50 -40.82 -0.27 4.93 16 36 H 0.11 1.49 6.40 -52.49 -0.34 1.15 16 37 H 0.11 1.46 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 40 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 320.43 15.07 4.83 4.83 Total: -1.00 -33.21 320.43 -6.88 -40.09 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -5.24 Total: 9.21 kcal Atomic # 6 Polarization: -14.32 SS G_CDS: -1.60 Total: -15.92 kcal Atomic # 7 Polarization: -37.18 SS G_CDS: 0.51 Total: -36.67 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.35 Total: -17.11 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.57 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.21 -6.88 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194081143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.458 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds