Wall clock time and date at job start Mon Mar 30 2020 01:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47229 * 2 1 4 4 C 1.52999 * 109.47032 * 60.00180 * 3 2 1 5 5 C 1.52998 * 109.47139 * 299.99728 * 3 2 1 6 6 N 1.46499 * 109.47058 * 179.97438 * 3 2 1 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 3 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 3 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 3 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47501 * 60.00015 * 20 18 16 22 22 H 1.48510 * 109.46856 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47250 * 299.99489 * 20 18 16 24 24 H 1.08996 * 109.47130 * 300.00405 * 1 2 3 25 25 H 1.09003 * 109.47208 * 59.99572 * 1 2 3 26 26 H 1.09000 * 109.47271 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46986 * 239.99881 * 2 1 3 28 28 H 1.09000 * 109.46715 * 120.00427 * 2 1 3 29 29 H 1.09000 * 109.47286 * 179.97438 * 4 3 2 30 30 H 1.08994 * 109.46975 * 299.99777 * 4 3 2 31 31 H 1.09003 * 109.46921 * 59.99868 * 4 3 2 32 32 H 1.08991 * 109.47344 * 299.99945 * 5 3 2 33 33 H 1.09004 * 109.46805 * 60.00901 * 5 3 2 34 34 H 1.09000 * 109.46843 * 179.97438 * 5 3 2 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 3 2 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5301 2.1637 1.2493 5 6 1.5301 2.1637 -1.2493 6 7 3.5050 1.4424 0.0006 7 6 4.1790 2.6095 0.0012 8 8 3.5711 3.6626 0.0018 9 6 5.6543 2.6095 0.0024 10 6 6.3567 1.4023 0.0024 11 6 7.7351 1.4089 0.0030 12 6 8.4289 2.6084 0.0041 13 6 7.7482 3.8091 0.0053 14 6 6.3599 3.8217 0.0043 15 8 5.6897 4.9997 0.0049 16 6 6.4260 6.1227 0.1238 17 1 7.5044 6.0633 0.1305 18 6 5.7986 7.3545 0.2373 19 7 4.4855 7.4270 0.2286 20 14 6.8189 8.9106 0.4013 21 1 7.6893 9.0601 -0.7926 22 1 5.9165 10.0854 0.5068 23 1 7.6619 8.8237 1.6207 24 1 -0.3633 0.5139 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8938 3.1912 1.2495 30 1 0.4401 2.1637 1.2492 31 1 1.8934 1.6498 2.1392 32 1 1.8934 1.6499 -2.1392 33 1 0.4400 2.1638 -1.2492 34 1 1.8931 3.1915 -1.2490 35 1 3.9900 0.6023 0.0006 36 1 5.8206 0.4648 -0.0029 37 1 8.2768 0.4747 0.0033 38 1 9.5088 2.6037 0.0050 39 1 8.2961 4.7398 0.0066 40 1 4.0467 8.2883 0.3084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194081143.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:39 Heat of formation + Delta-G solvation = -64.219249 kcal Electronic energy + Delta-G solvation = -21962.817305 eV Core-core repulsion = 18742.414208 eV Total energy + Delta-G solvation = -3220.403097 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.42348 -40.22609 -38.12027 -37.64106 -34.33675 -33.92716 -31.89534 -30.56721 -30.15950 -28.25834 -27.37407 -25.71084 -24.29019 -23.09121 -21.36006 -20.35171 -19.75130 -19.16189 -17.88569 -16.99681 -16.41106 -16.04160 -16.00396 -15.83720 -15.60582 -15.31197 -15.12720 -14.80817 -14.44781 -14.18565 -13.99087 -13.54442 -13.24932 -13.02219 -12.97810 -12.77830 -12.66260 -12.58181 -12.47494 -12.34277 -12.19379 -12.14957 -11.57867 -11.55982 -11.34736 -10.81721 -10.28212 -9.99199 -9.75406 -9.01866 -8.43618 -6.14448 0.15982 0.74121 1.31729 1.44691 1.49466 2.16106 2.18036 2.34216 2.89487 3.25017 3.49000 3.75583 3.99631 4.04261 4.09333 4.14212 4.29552 4.46492 4.52273 4.54421 4.60199 4.72569 4.77634 4.85095 4.97074 5.00191 5.03018 5.08115 5.14444 5.15678 5.16895 5.28553 5.48746 5.49387 5.56623 5.63851 5.70686 5.79733 5.97163 6.18601 6.84211 6.95651 7.62248 7.82088 8.76527 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017244 B = 0.005719 C = 0.004430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.351303 B = 4895.186393 C = 6319.054308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.173 3.827 4 C -0.161 4.161 5 C -0.161 4.161 6 N -0.715 5.715 7 C 0.548 3.452 8 O -0.554 6.554 9 C -0.246 4.246 10 C -0.032 4.032 11 C -0.201 4.201 12 C -0.043 4.043 13 C -0.259 4.259 14 C 0.147 3.853 15 O -0.187 6.187 16 C -0.429 4.429 17 H 0.105 0.895 18 C -0.021 4.021 19 N -0.904 5.904 20 Si 1.021 2.979 21 H -0.254 1.254 22 H -0.273 1.273 23 H -0.255 1.255 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.029 0.971 30 H 0.081 0.919 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.029 0.971 35 H 0.408 0.592 36 H 0.160 0.840 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.036 -17.519 -0.182 17.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C 0.088 3.912 4 C -0.219 4.219 5 C -0.219 4.219 6 N -0.371 5.371 7 C 0.337 3.663 8 O -0.432 6.432 9 C -0.250 4.250 10 C -0.050 4.050 11 C -0.220 4.220 12 C -0.061 4.061 13 C -0.279 4.279 14 C 0.092 3.908 15 O -0.090 6.090 16 C -0.505 4.505 17 H 0.122 0.878 18 C -0.220 4.220 19 N -0.540 5.540 20 Si 0.839 3.161 21 H -0.178 1.178 22 H -0.198 1.198 23 H -0.179 1.179 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.095 0.905 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.100 0.900 34 H 0.048 0.952 35 H 0.246 0.754 36 H 0.177 0.823 37 H 0.181 0.819 38 H 0.170 0.830 39 H 0.139 0.861 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.922 -16.543 -0.191 16.569 hybrid contribution 0.476 1.118 0.051 1.216 sum -0.446 -15.425 -0.140 15.432 Atomic orbital electron populations 1.21864 0.93810 1.02916 1.02354 1.21711 0.97642 0.91997 1.03708 1.20392 0.78807 0.97406 0.94591 1.22217 1.01858 1.00399 0.97443 1.22213 1.01869 1.00385 0.97419 1.45865 1.06773 1.07610 1.76805 1.18443 0.87615 0.84030 0.76170 1.90885 1.70081 1.32868 1.49359 1.19429 0.92701 0.92681 1.20227 1.21318 0.95090 0.95065 0.93521 1.21172 0.93515 0.98763 1.08524 1.21417 1.00886 0.91091 0.92670 1.21296 0.92691 1.00515 1.13348 1.20101 0.92110 0.87035 0.91523 1.84182 1.35509 1.11580 1.77699 1.21978 0.91898 0.83340 1.53245 0.87792 1.26727 0.97360 1.02357 0.95591 1.70315 1.10254 1.26753 1.46673 0.84645 0.77139 0.74283 0.80033 1.17828 1.19786 1.17894 0.92421 0.92386 0.90523 0.89984 0.90036 0.95191 0.90005 0.92287 0.92195 0.90005 0.95176 0.75419 0.82257 0.81909 0.82985 0.86056 0.92109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.21 71.98 0.66 -1.71 16 2 C -0.11 -2.03 5.10 30.59 0.16 -1.88 16 3 C 0.17 4.97 0.83 3.60 0.00 4.97 16 4 C -0.16 -5.24 8.05 71.98 0.58 -4.66 16 5 C -0.16 -5.19 8.05 71.98 0.58 -4.61 16 6 N -0.72 -22.75 5.06 -426.06 -2.15 -24.91 16 7 C 0.55 24.87 7.18 86.69 0.62 25.49 16 8 O -0.55 -32.10 11.37 16.88 0.19 -31.91 16 9 C -0.25 -10.80 5.89 -19.99 -0.12 -10.92 16 10 C -0.03 -0.96 9.54 22.52 0.21 -0.75 16 11 C -0.20 -5.48 10.03 22.25 0.22 -5.25 16 12 C -0.04 -1.35 10.03 22.30 0.22 -1.13 16 13 C -0.26 -11.29 9.16 22.36 0.20 -11.09 16 14 C 0.15 7.71 6.66 22.91 0.15 7.86 16 15 O -0.19 -12.04 7.84 0.74 0.01 -12.03 16 16 C -0.43 -26.28 9.49 67.93 0.64 -25.63 16 17 H 0.10 5.73 5.21 -2.91 -0.02 5.71 16 18 C -0.02 -1.27 5.49 84.85 0.47 -0.80 16 19 N -0.90 -59.67 13.67 21.62 0.30 -59.37 16 20 Si 1.02 44.77 29.55 68.60 2.03 46.80 16 21 H -0.25 -10.35 7.11 99.48 0.71 -9.64 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.25 -10.39 7.11 99.48 0.71 -9.69 16 24 H 0.06 0.94 6.43 -2.39 -0.02 0.93 16 25 H 0.06 0.94 6.43 -2.39 -0.02 0.93 16 26 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.03 1.31 6.16 -2.39 -0.01 1.29 16 30 H 0.08 2.21 6.43 -2.39 -0.02 2.19 16 31 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.19 6.43 -2.38 -0.02 2.17 16 34 H 0.03 1.30 6.17 -2.39 -0.01 1.29 16 35 H 0.41 9.44 6.50 -92.71 -0.60 8.83 16 36 H 0.16 3.27 6.40 -2.91 -0.02 3.25 16 37 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 38 H 0.15 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 40 H 0.27 16.37 8.31 -92.71 -0.77 15.59 16 Total: -1.00 -86.40 320.43 5.44 -80.96 By element: Atomic # 1 Polarization: 30.09 SS G_CDS: 0.46 Total: 30.55 kcal Atomic # 6 Polarization: -34.70 SS G_CDS: 4.62 Total: -30.09 kcal Atomic # 7 Polarization: -82.42 SS G_CDS: -1.86 Total: -84.28 kcal Atomic # 8 Polarization: -44.14 SS G_CDS: 0.20 Total: -43.94 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -86.40 5.44 -80.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194081143.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.740 kcal (2) G-P(sol) polarization free energy of solvation -86.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds