Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47555 * 2 1 4 4 C 1.52991 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47425 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99813 * 269.99909 * 5 4 3 7 7 C 1.34781 * 120.00056 * 89.99600 * 5 4 3 8 8 O 1.21588 * 119.99845 * 355.03191 * 7 5 4 9 9 C 1.47534 * 119.99820 * 175.03370 * 7 5 4 10 10 C 1.39663 * 120.19593 * 316.40864 * 9 7 5 11 11 C 1.37825 * 119.91905 * 179.97438 * 10 9 7 12 12 C 1.38576 * 120.32275 * 0.02562 * 11 10 9 13 13 C 1.38023 * 120.40369 * 0.02562 * 12 11 10 14 14 C 1.38844 * 120.07232 * 359.97408 * 13 12 11 15 15 O 1.35515 * 120.16403 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99935 * 354.64359 * 15 14 13 17 17 H 1.08001 * 119.99899 * 3.82737 * 16 15 14 18 18 C 1.38691 * 119.99861 * 183.82234 * 16 15 14 19 19 N 1.31521 * 120.00172 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46980 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47300 * 119.99741 * 20 18 16 23 23 H 1.48501 * 109.47254 * 240.00189 * 20 18 16 24 24 H 1.09000 * 109.46525 * 60.00386 * 1 2 3 25 25 H 1.08991 * 109.47576 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47177 * 300.00869 * 1 2 3 27 27 H 1.09002 * 109.47035 * 239.99421 * 2 1 3 28 28 H 1.09000 * 109.46525 * 119.99614 * 2 1 3 29 29 H 1.08995 * 109.46989 * 59.98917 * 3 2 1 30 30 H 1.09001 * 109.46280 * 299.99837 * 3 2 1 31 31 H 1.08999 * 109.47767 * 59.99063 * 4 3 2 32 32 H 1.09005 * 109.47090 * 299.99663 * 4 3 2 33 33 H 1.08997 * 109.46640 * 266.26750 * 6 5 4 34 34 H 1.08994 * 109.46922 * 26.27018 * 6 5 4 35 35 H 1.09003 * 109.47035 * 146.27278 * 6 5 4 36 36 H 1.08001 * 120.04391 * 0.25195 * 10 9 7 37 37 H 1.07999 * 119.84146 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.79846 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.96829 * 180.02562 * 13 12 11 40 40 H 0.97009 * 119.99924 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.3022 3.5137 -1.2703 7 6 4.2836 3.4593 1.1657 8 8 3.9965 2.9201 2.2170 9 6 4.8784 4.8094 1.1674 10 6 5.9575 5.1027 0.3306 11 6 6.5084 6.3660 0.3364 12 6 5.9973 7.3483 1.1695 13 6 4.9319 7.0728 2.0027 14 6 4.3642 5.8058 2.0102 15 8 3.3178 5.5333 2.8271 16 6 2.9453 6.5015 3.6882 17 1 3.4342 7.4642 3.6627 18 6 1.9343 6.2612 4.6067 19 7 1.3386 5.0891 4.6373 20 14 1.4177 7.6029 5.7994 21 1 2.2362 8.8189 5.5613 22 1 -0.0175 7.9234 5.5926 23 1 1.6242 7.1329 7.1929 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8898 30 1 1.6768 1.9562 -0.8901 31 1 3.9331 0.9286 -0.8907 32 1 3.9337 0.9285 0.8892 33 1 5.3488 3.3976 -1.5518 34 1 3.6676 3.0840 -2.0453 35 1 4.0717 4.5731 -1.1579 36 1 6.3569 4.3418 -0.3236 37 1 7.3431 6.5913 -0.3109 38 1 6.4358 8.3353 1.1675 39 1 4.5389 7.8438 2.6488 40 1 0.6317 4.9209 5.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194085580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = -42.632506 kcal Electronic energy + Delta-G solvation = -21743.483574 eV Core-core repulsion = 18524.016548 eV Total energy + Delta-G solvation = -3219.467026 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.77672 -38.31748 -36.37001 -35.70129 -34.07277 -32.33735 -30.80584 -28.99050 -28.77381 -26.27989 -25.41487 -24.06118 -22.16951 -21.41251 -20.90909 -19.04838 -18.04452 -17.12954 -16.28286 -15.63570 -15.12788 -15.04812 -14.67394 -14.28316 -14.07862 -13.73414 -13.62565 -13.35124 -12.89788 -12.72084 -12.56075 -12.32630 -12.28156 -11.98822 -11.70207 -11.34492 -11.12651 -11.07339 -11.05799 -10.90553 -10.87959 -10.70198 -10.43635 -10.33022 -9.56756 -8.94786 -8.86550 -8.23023 -8.15162 -7.31413 -6.45156 -4.05047 1.81115 2.31449 3.11550 3.13155 3.18596 3.45317 3.66646 3.93707 4.54428 5.02980 5.05631 5.06842 5.16582 5.23796 5.28853 5.41136 5.49943 5.52186 5.65262 5.75180 5.76544 5.89316 5.93157 5.95555 5.97675 6.02565 6.11869 6.17355 6.29546 6.45417 6.58519 6.60297 6.68543 6.94618 7.04862 7.08043 7.26122 7.30442 7.69831 7.89875 7.99519 8.95752 9.00003 9.65917 10.70119 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.006672 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.280857 B = 4195.911445 C = 6183.007594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.138 4.138 4 C 0.123 3.877 5 N -0.626 5.626 6 C 0.086 3.914 7 C 0.569 3.431 8 O -0.511 6.511 9 C -0.219 4.219 10 C -0.042 4.042 11 C -0.227 4.227 12 C -0.054 4.054 13 C -0.237 4.237 14 C 0.189 3.811 15 O -0.145 6.145 16 C -0.400 4.400 17 H 0.095 0.905 18 C 0.043 3.957 19 N -0.841 5.841 20 Si 0.942 3.058 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.051 0.949 25 H 0.050 0.950 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.835 -3.276 -11.565 12.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.177 4.177 4 C 0.000 4.000 5 N -0.362 5.362 6 C -0.058 4.058 7 C 0.359 3.641 8 O -0.385 6.385 9 C -0.224 4.224 10 C -0.061 4.061 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.256 4.256 14 C 0.130 3.870 15 O -0.044 6.044 16 C -0.475 4.475 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.474 5.474 20 Si 0.766 3.234 21 H -0.190 1.190 22 H -0.201 1.201 23 H -0.200 1.200 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.092 0.908 36 H 0.135 0.865 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 3.311 -3.900 -10.788 11.939 hybrid contribution -0.227 0.836 0.459 0.980 sum 3.084 -3.064 -10.329 11.207 Atomic orbital electron populations 1.21755 0.95939 1.01134 1.02065 1.21429 0.95938 0.96716 1.01615 1.22001 0.95852 0.96774 1.03041 1.21342 0.93890 0.82621 1.02170 1.47768 1.68186 1.14031 1.06223 1.21797 1.00102 0.98540 0.85352 1.18256 0.77541 0.85365 0.82912 1.90819 1.50127 1.66699 1.30836 1.18773 1.03839 0.93432 1.06346 1.20867 0.93760 0.96207 0.95220 1.20477 1.04458 0.94150 1.05542 1.20889 0.94454 0.98047 0.93873 1.21139 1.01449 0.97441 1.05576 1.19213 0.87018 0.91576 0.89153 1.84031 1.38269 1.40746 1.41381 1.21469 1.19818 0.93538 1.12712 0.88798 1.25361 0.95795 0.97741 0.97450 1.70104 1.22069 1.21101 1.34089 0.85648 0.78757 0.79493 0.79513 1.18980 1.20071 1.20001 0.92996 0.93080 0.92391 0.92451 0.91872 0.90659 0.92319 0.91428 0.90296 0.93166 0.91921 0.90759 0.86507 0.87249 0.87206 0.85094 0.91934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.91 37.16 0.37 -1.43 16 2 C -0.12 -1.47 5.93 -26.73 -0.16 -1.63 16 3 C -0.14 -2.09 5.54 -26.74 -0.15 -2.24 16 4 C 0.12 1.86 5.35 -4.05 -0.02 1.84 16 5 N -0.63 -10.90 2.87 -182.82 -0.53 -11.43 16 6 C 0.09 1.13 8.99 59.85 0.54 1.67 16 7 C 0.57 12.90 7.04 -12.47 -0.09 12.81 16 8 O -0.51 -14.00 15.93 -8.44 -0.13 -14.13 16 9 C -0.22 -4.84 4.91 -104.81 -0.51 -5.35 16 10 C -0.04 -0.74 7.94 -39.20 -0.31 -1.05 16 11 C -0.23 -3.74 10.02 -39.61 -0.40 -4.14 16 12 C -0.05 -0.96 10.03 -39.54 -0.40 -1.36 16 13 C -0.24 -5.12 9.16 -39.44 -0.36 -5.48 16 14 C 0.19 4.71 6.63 -38.59 -0.26 4.45 16 15 O -0.14 -4.28 8.64 -12.92 -0.11 -4.39 16 16 C -0.40 -11.37 9.49 30.90 0.29 -11.07 16 17 H 0.09 2.43 5.20 -52.49 -0.27 2.16 16 18 C 0.04 1.21 5.49 -17.52 -0.10 1.12 16 19 N -0.84 -25.43 13.67 55.48 0.76 -24.67 16 20 Si 0.94 20.70 29.55 -169.99 -5.02 15.68 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 23 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 32 H 0.08 1.33 7.50 -51.93 -0.39 0.94 16 33 H 0.05 0.56 6.75 -51.93 -0.35 0.21 16 34 H 0.06 0.67 8.04 -51.93 -0.42 0.25 16 35 H 0.07 1.08 6.65 -51.93 -0.35 0.73 16 36 H 0.12 1.70 6.11 -52.49 -0.32 1.38 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 333.79 15.07 5.03 5.03 Total: -1.00 -34.19 333.79 -7.31 -41.49 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -5.75 Total: 4.29 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.55 Total: -11.86 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.23 Total: -36.10 kcal Atomic # 8 Polarization: -18.28 SS G_CDS: -0.25 Total: -18.53 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -34.19 -7.31 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194085580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.141 kcal (2) G-P(sol) polarization free energy of solvation -34.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds