Wall clock time and date at job start Mon Mar 30 2020 01:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47555 * 2 1 4 4 C 1.52991 * 109.47301 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47425 * 179.97438 * 4 3 2 6 6 C 1.46500 * 119.99813 * 269.99909 * 5 4 3 7 7 C 1.34781 * 120.00056 * 89.99600 * 5 4 3 8 8 O 1.21588 * 119.99845 * 355.03191 * 7 5 4 9 9 C 1.47534 * 119.99820 * 175.03370 * 7 5 4 10 10 C 1.39663 * 120.19593 * 316.40864 * 9 7 5 11 11 C 1.37825 * 119.91905 * 179.97438 * 10 9 7 12 12 C 1.38576 * 120.32275 * 0.02562 * 11 10 9 13 13 C 1.38023 * 120.40369 * 0.02562 * 12 11 10 14 14 C 1.38844 * 120.07232 * 359.97408 * 13 12 11 15 15 O 1.35515 * 120.16403 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99935 * 354.64359 * 15 14 13 17 17 H 1.08001 * 119.99899 * 3.82737 * 16 15 14 18 18 C 1.38691 * 119.99861 * 183.82234 * 16 15 14 19 19 N 1.31521 * 120.00172 * 359.97438 * 18 16 15 20 20 Si 1.86805 * 120.00094 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46980 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47300 * 119.99741 * 20 18 16 23 23 H 1.48501 * 109.47254 * 240.00189 * 20 18 16 24 24 H 1.09000 * 109.46525 * 60.00386 * 1 2 3 25 25 H 1.08991 * 109.47576 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47177 * 300.00869 * 1 2 3 27 27 H 1.09002 * 109.47035 * 239.99421 * 2 1 3 28 28 H 1.09000 * 109.46525 * 119.99614 * 2 1 3 29 29 H 1.08995 * 109.46989 * 59.98917 * 3 2 1 30 30 H 1.09001 * 109.46280 * 299.99837 * 3 2 1 31 31 H 1.08999 * 109.47767 * 59.99063 * 4 3 2 32 32 H 1.09005 * 109.47090 * 299.99663 * 4 3 2 33 33 H 1.08997 * 109.46640 * 266.26750 * 6 5 4 34 34 H 1.08994 * 109.46922 * 26.27018 * 6 5 4 35 35 H 1.09003 * 109.47035 * 146.27278 * 6 5 4 36 36 H 1.08001 * 120.04391 * 0.25195 * 10 9 7 37 37 H 1.07999 * 119.84146 * 179.97438 * 11 10 9 38 38 H 1.08002 * 119.79846 * 179.97438 * 12 11 10 39 39 H 1.08000 * 119.96829 * 180.02562 * 13 12 11 40 40 H 0.97009 * 119.99924 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 7 4.0585 2.8236 -0.0013 6 6 4.3022 3.5137 -1.2703 7 6 4.2836 3.4593 1.1657 8 8 3.9965 2.9201 2.2170 9 6 4.8784 4.8094 1.1674 10 6 5.9575 5.1027 0.3306 11 6 6.5084 6.3660 0.3364 12 6 5.9973 7.3483 1.1695 13 6 4.9319 7.0728 2.0027 14 6 4.3642 5.8058 2.0102 15 8 3.3178 5.5333 2.8271 16 6 2.9453 6.5015 3.6882 17 1 3.4342 7.4642 3.6627 18 6 1.9343 6.2612 4.6067 19 7 1.3386 5.0891 4.6373 20 14 1.4177 7.6029 5.7994 21 1 2.2362 8.8189 5.5613 22 1 -0.0175 7.9234 5.5926 23 1 1.6242 7.1329 7.1929 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3634 -1.0275 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9563 0.8898 30 1 1.6768 1.9562 -0.8901 31 1 3.9331 0.9286 -0.8907 32 1 3.9337 0.9285 0.8892 33 1 5.3488 3.3976 -1.5518 34 1 3.6676 3.0840 -2.0453 35 1 4.0717 4.5731 -1.1579 36 1 6.3569 4.3418 -0.3236 37 1 7.3431 6.5913 -0.3109 38 1 6.4358 8.3353 1.1675 39 1 4.5389 7.8438 2.6488 40 1 0.6317 4.9209 5.2801 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194085580.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:45 Heat of formation + Delta-G solvation = -65.147483 kcal Electronic energy + Delta-G solvation = -21744.459897 eV Core-core repulsion = 18524.016548 eV Total energy + Delta-G solvation = -3220.443348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.43476 -40.02180 -38.07219 -37.17127 -35.37058 -34.35016 -32.30110 -30.62063 -30.04278 -27.57255 -27.40132 -25.43501 -23.65977 -23.01482 -22.08183 -20.61497 -19.91062 -18.80508 -17.93189 -17.19682 -16.63399 -16.43316 -16.21797 -15.88657 -15.57085 -15.45728 -15.28541 -14.65238 -14.38489 -14.23861 -13.90152 -13.81218 -13.57993 -13.44395 -13.22063 -12.97719 -12.64124 -12.53798 -12.28379 -12.26160 -12.16629 -12.10608 -11.98654 -11.51368 -11.43712 -10.86707 -10.67504 -9.80923 -9.56844 -9.05168 -8.48287 -6.18867 0.21774 0.71085 1.30420 1.41190 1.50573 1.85884 2.13658 2.19722 2.82704 3.15211 3.43485 3.73522 3.93635 3.99384 4.08742 4.17751 4.25872 4.36086 4.36769 4.53043 4.57092 4.61823 4.63221 4.77646 4.86254 4.89997 4.92516 4.98844 5.02851 5.06828 5.14831 5.20880 5.32973 5.40815 5.51133 5.58534 5.69847 5.74301 5.94307 6.17045 6.45031 6.92626 7.34300 7.76086 8.73693 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012309 B = 0.006672 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.280857 B = 4195.911445 C = 6183.007594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.132 4.132 4 C 0.119 3.881 5 N -0.617 5.617 6 C 0.076 3.924 7 C 0.556 3.444 8 O -0.580 6.580 9 C -0.235 4.235 10 C -0.033 4.033 11 C -0.194 4.194 12 C -0.045 4.045 13 C -0.253 4.253 14 C 0.145 3.855 15 O -0.210 6.210 16 C -0.421 4.421 17 H 0.108 0.892 18 C -0.025 4.025 19 N -0.913 5.913 20 Si 1.023 2.977 21 H -0.244 1.244 22 H -0.267 1.267 23 H -0.271 1.271 24 H 0.062 0.938 25 H 0.072 0.928 26 H 0.029 0.971 27 H 0.094 0.906 28 H 0.052 0.948 29 H 0.012 0.988 30 H 0.073 0.927 31 H 0.122 0.878 32 H 0.053 0.947 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.158 0.842 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.123 0.877 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.741 -2.203 -15.399 16.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.170 4.170 4 C -0.003 4.003 5 N -0.351 5.351 6 C -0.065 4.065 7 C 0.347 3.653 8 O -0.460 6.460 9 C -0.239 4.239 10 C -0.051 4.051 11 C -0.212 4.212 12 C -0.063 4.063 13 C -0.273 4.273 14 C 0.091 3.909 15 O -0.114 6.114 16 C -0.497 4.497 17 H 0.125 0.875 18 C -0.223 4.223 19 N -0.550 5.550 20 Si 0.842 3.158 21 H -0.167 1.167 22 H -0.192 1.192 23 H -0.196 1.196 24 H 0.081 0.919 25 H 0.091 0.909 26 H 0.048 0.952 27 H 0.113 0.887 28 H 0.070 0.930 29 H 0.031 0.969 30 H 0.092 0.908 31 H 0.140 0.860 32 H 0.071 0.929 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.140 0.860 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.279 -2.806 -14.736 16.262 hybrid contribution -0.803 0.483 1.269 1.578 sum 5.476 -2.323 -13.467 14.722 Atomic orbital electron populations 1.21768 0.95673 1.02282 1.01226 1.21420 0.96185 0.94686 1.02842 1.21929 0.96133 0.98391 1.00596 1.21571 0.93634 0.81671 1.03427 1.47868 1.66214 1.14729 1.06247 1.22140 1.03149 0.97543 0.83693 1.18654 0.77300 0.85807 0.83540 1.90780 1.53192 1.68337 1.33690 1.19196 1.05170 0.92707 1.06833 1.21346 0.91542 0.98062 0.94177 1.21181 1.03867 0.92560 1.03623 1.21415 0.92363 1.00528 0.91968 1.21283 1.03027 0.96004 1.06948 1.19986 0.87344 0.93976 0.89585 1.84026 1.41414 1.42074 1.43902 1.22010 1.20294 0.94129 1.13245 0.87516 1.26763 0.95601 1.00537 0.99417 1.70297 1.24056 1.24330 1.36296 0.84486 0.78689 0.76411 0.76256 1.16739 1.19165 1.19590 0.91921 0.90901 0.95201 0.88735 0.92954 0.96891 0.90848 0.86009 0.92884 0.89541 0.88607 0.92249 0.82456 0.81718 0.82808 0.85973 0.92054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.11 -2.75 5.93 30.60 0.18 -2.57 16 3 C -0.13 -4.12 5.54 30.59 0.17 -3.95 16 4 C 0.12 3.55 5.35 86.38 0.46 4.01 16 5 N -0.62 -21.17 2.87 -850.57 -2.44 -23.61 16 6 C 0.08 1.73 8.99 127.77 1.15 2.88 16 7 C 0.56 26.42 7.04 86.69 0.61 27.03 16 8 O -0.58 -34.85 15.93 9.13 0.15 -34.71 16 9 C -0.23 -10.47 4.91 -19.99 -0.10 -10.57 16 10 C -0.03 -1.04 7.94 22.52 0.18 -0.86 16 11 C -0.19 -5.23 10.02 22.25 0.22 -5.00 16 12 C -0.04 -1.40 10.03 22.30 0.22 -1.18 16 13 C -0.25 -10.97 9.16 22.36 0.20 -10.76 16 14 C 0.14 7.59 6.63 22.91 0.15 7.74 16 15 O -0.21 -13.59 8.64 -6.91 -0.06 -13.65 16 16 C -0.42 -25.83 9.49 67.93 0.64 -25.18 16 17 H 0.11 5.88 5.20 -2.91 -0.02 5.87 16 18 C -0.03 -1.51 5.49 84.85 0.47 -1.04 16 19 N -0.91 -60.51 13.67 21.62 0.30 -60.21 16 20 Si 1.02 44.93 29.55 68.60 2.03 46.96 16 21 H -0.24 -9.67 7.11 99.48 0.71 -8.97 16 22 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 27 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 31 H 0.12 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.05 1.87 7.50 -2.38 -0.02 1.85 16 33 H 0.09 1.39 6.75 -2.39 -0.02 1.38 16 34 H 0.10 1.60 8.04 -2.39 -0.02 1.58 16 35 H 0.06 1.56 6.65 -2.39 -0.02 1.54 16 36 H 0.16 3.62 6.11 -2.91 -0.02 3.61 16 37 H 0.17 2.85 8.06 -2.91 -0.02 2.83 16 38 H 0.15 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 40 H 0.27 16.39 8.31 -92.70 -0.77 15.62 16 Total: -1.00 -89.58 333.79 6.27 -83.31 By element: Atomic # 1 Polarization: 23.23 SS G_CDS: 1.03 Total: 24.26 kcal Atomic # 6 Polarization: -27.63 SS G_CDS: 5.28 Total: -22.35 kcal Atomic # 7 Polarization: -81.68 SS G_CDS: -2.15 Total: -83.83 kcal Atomic # 8 Polarization: -48.44 SS G_CDS: 0.09 Total: -48.35 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -89.58 6.27 -83.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194085580.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.162 kcal (2) G-P(sol) polarization free energy of solvation -89.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds