Wall clock time and date at job start Mon Mar 30 2020 01:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00602 * 2 1 3 5 5 C 1.52997 * 109.47556 * 120.00253 * 2 1 3 6 6 N 1.46499 * 109.47058 * 59.99891 * 5 2 1 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 5 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 5 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47413 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47271 * 120.00166 * 20 18 16 23 23 H 1.48507 * 109.46838 * 239.99679 * 20 18 16 24 24 H 1.09004 * 109.46840 * 299.99518 * 1 2 3 25 25 H 1.09000 * 109.47712 * 59.99595 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47208 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47271 * 300.00115 * 3 2 1 29 29 H 1.08996 * 109.47130 * 60.00858 * 3 2 1 30 30 H 1.09004 * 109.46904 * 299.99602 * 4 2 1 31 31 H 1.09000 * 109.47598 * 59.99728 * 4 2 1 32 32 H 1.09000 * 109.46923 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.46796 * 300.00141 * 5 2 1 34 34 H 1.08995 * 109.47178 * 179.97438 * 5 2 1 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 5 2 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2491 6 7 1.5517 -2.1025 1.2491 7 6 1.8769 -2.9323 2.2601 8 8 2.5753 -2.5344 3.1725 9 6 1.3847 -4.3231 2.2603 10 6 0.5819 -4.7843 1.2147 11 6 0.1256 -6.0849 1.2204 12 6 0.4590 -6.9387 2.2597 13 6 1.2507 -6.4966 3.3003 14 6 1.7196 -5.1899 3.3110 15 8 2.4975 -4.7540 4.3316 16 6 2.6847 -5.6012 5.3635 17 1 2.2921 -6.6062 5.3152 18 6 3.3814 -5.1821 6.4872 19 7 3.8599 -3.9585 6.5459 20 14 3.6413 -6.3562 7.9167 21 1 3.0101 -7.6636 7.6045 22 1 5.0966 -6.5495 8.1402 23 1 3.0234 -5.7887 9.1420 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2494 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2492 33 1 1.6767 -0.2075 2.1391 34 1 3.1300 -0.7216 1.2489 35 1 0.9943 -2.4198 0.5214 36 1 0.3228 -4.1241 0.4002 37 1 -0.4954 -6.4400 0.4114 38 1 0.0965 -7.9560 2.2558 39 1 1.5058 -7.1679 4.1068 40 1 4.3469 -3.6653 7.3318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194276662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:43 Heat of formation + Delta-G solvation = -49.111732 kcal Electronic energy + Delta-G solvation = -21577.981851 eV Core-core repulsion = 18358.233865 eV Total energy + Delta-G solvation = -3219.747986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.66343 -38.51984 -36.99388 -36.29011 -32.99638 -32.31128 -30.44575 -28.90120 -27.40822 -27.34946 -26.13303 -25.25442 -22.78547 -21.35101 -19.82907 -19.08622 -18.00653 -17.48080 -16.15000 -15.54874 -15.03127 -14.70391 -14.42731 -14.28878 -14.06786 -13.79823 -13.73304 -13.53023 -13.38812 -12.64117 -12.53994 -12.44364 -12.21045 -11.77190 -11.76179 -11.70105 -11.29973 -11.11950 -10.90693 -10.90561 -10.81042 -10.79405 -10.62227 -10.42719 -9.54072 -8.86744 -8.79676 -8.46306 -8.23849 -7.28634 -6.42485 -4.02414 1.74607 2.33639 3.12889 3.13838 3.19563 3.79191 3.80457 3.95123 4.65155 4.66405 4.75548 4.81669 5.09032 5.19583 5.33691 5.48051 5.48114 5.51507 5.56565 5.68128 5.72808 5.73967 5.78285 5.90567 5.96648 6.00625 6.09615 6.12816 6.14482 6.29223 6.30810 6.58331 6.71688 6.93593 7.04457 7.08347 7.26099 7.31515 7.71517 7.94473 8.19470 8.97268 9.16818 9.70245 10.71508 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.004920 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.312028 B = 5689.485194 C = 6944.720086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.082 4.082 3 C -0.138 4.138 4 C -0.142 4.142 5 C 0.135 3.865 6 N -0.742 5.742 7 C 0.552 3.448 8 O -0.502 6.502 9 C -0.226 4.226 10 C -0.039 4.039 11 C -0.231 4.231 12 C -0.051 4.051 13 C -0.238 4.238 14 C 0.189 3.811 15 O -0.124 6.124 16 C -0.404 4.404 17 H 0.094 0.906 18 C 0.044 3.956 19 N -0.833 5.833 20 Si 0.941 3.059 21 H -0.266 1.266 22 H -0.275 1.275 23 H -0.275 1.275 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.390 0.610 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.364 3.890 -13.076 15.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.196 4.196 4 C -0.199 4.199 5 C 0.011 3.989 6 N -0.398 5.398 7 C 0.341 3.659 8 O -0.377 6.377 9 C -0.231 4.231 10 C -0.058 4.058 11 C -0.250 4.250 12 C -0.070 4.070 13 C -0.257 4.257 14 C 0.129 3.871 15 O -0.022 6.022 16 C -0.480 4.480 17 H 0.112 0.888 18 C -0.163 4.163 19 N -0.464 5.464 20 Si 0.765 3.235 21 H -0.190 1.190 22 H -0.200 1.200 23 H -0.200 1.200 24 H 0.077 0.923 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.226 0.774 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.536 4.580 -12.130 14.099 hybrid contribution -0.222 -0.859 0.287 0.933 sum -5.758 3.721 -11.843 13.684 Atomic orbital electron populations 1.21881 0.94249 1.01973 1.01810 1.20808 0.96130 0.95992 0.95310 1.21798 1.01298 0.94616 1.01911 1.21882 1.01401 1.00153 0.96470 1.21241 0.98953 0.82057 0.96693 1.45941 1.55882 1.11862 1.26156 1.18234 0.80647 0.85247 0.81728 1.90946 1.35968 1.76361 1.34385 1.18882 1.10961 0.93852 0.99380 1.20745 0.94393 0.95408 0.95251 1.20455 1.08532 0.94709 1.01303 1.20888 0.94902 0.98270 0.92947 1.21157 1.05984 0.96511 1.02060 1.19286 0.88138 0.91124 0.88524 1.84182 1.53424 1.40731 1.23887 1.21550 1.37278 0.95153 0.93984 0.88834 1.25388 0.95964 0.96895 0.98096 1.70139 1.31452 1.16018 1.28808 0.85662 0.78546 0.79348 0.79931 1.18971 1.20027 1.20025 0.92339 0.92635 0.92533 0.92332 0.92424 0.92322 0.92539 0.92629 0.92351 0.91885 0.91907 0.77395 0.87222 0.87311 0.87211 0.85089 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.30 37.15 0.31 -1.07 16 2 C -0.08 -0.87 0.78 -154.51 -0.12 -0.99 16 3 C -0.14 -1.29 8.47 37.16 0.31 -0.98 16 4 C -0.14 -1.38 8.30 37.16 0.31 -1.07 16 5 C 0.13 2.00 4.56 -4.04 -0.02 1.98 16 6 N -0.74 -12.27 4.91 -61.35 -0.30 -12.57 16 7 C 0.55 12.42 7.76 -12.47 -0.10 12.32 16 8 O -0.50 -14.07 15.17 -16.57 -0.25 -14.32 16 9 C -0.23 -5.00 5.89 -104.81 -0.62 -5.61 16 10 C -0.04 -0.68 9.54 -39.20 -0.37 -1.05 16 11 C -0.23 -3.83 10.03 -39.61 -0.40 -4.22 16 12 C -0.05 -0.92 10.03 -39.54 -0.40 -1.32 16 13 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 14 C 0.19 4.77 6.66 -38.60 -0.26 4.51 16 15 O -0.12 -3.72 7.84 -21.08 -0.17 -3.88 16 16 C -0.40 -11.56 9.49 30.90 0.29 -11.27 16 17 H 0.09 2.43 5.21 -52.49 -0.27 2.16 16 18 C 0.04 1.25 5.49 -17.51 -0.10 1.15 16 19 N -0.83 -25.39 13.67 55.48 0.76 -24.64 16 20 Si 0.94 20.72 29.55 -169.99 -5.02 15.69 16 21 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.06 0.56 6.86 -51.93 -0.36 0.20 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.55 6.86 -51.93 -0.36 0.20 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.39 5.27 4.19 -40.82 -0.17 5.10 16 36 H 0.11 1.48 6.40 -52.49 -0.34 1.15 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.81 5.64 -52.49 -0.30 2.52 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 329.78 15.07 4.97 4.97 Total: -1.00 -34.43 329.78 -7.10 -41.53 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -5.57 Total: 6.39 kcal Atomic # 6 Polarization: -11.66 SS G_CDS: -1.51 Total: -13.17 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.46 Total: -37.21 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.42 Total: -18.21 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.43 -7.10 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194276662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.583 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds