Wall clock time and date at job start Mon Mar 30 2020 01:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.46888 * 2 1 4 4 C 1.53004 * 109.46816 * 240.00602 * 2 1 3 5 5 C 1.52997 * 109.47556 * 120.00253 * 2 1 3 6 6 N 1.46499 * 109.47058 * 59.99891 * 5 2 1 7 7 C 1.34776 * 120.00532 * 180.02562 * 6 5 2 8 8 O 1.21596 * 119.99483 * 0.02562 * 7 6 5 9 9 C 1.47529 * 120.00576 * 179.97438 * 7 6 5 10 10 C 1.39668 * 120.19410 * 0.02562 * 9 7 6 11 11 C 1.37835 * 119.91853 * 179.97438 * 10 9 7 12 12 C 1.38573 * 120.31903 * 0.02562 * 11 10 9 13 13 C 1.38022 * 120.40696 * 0.02562 * 12 11 10 14 14 C 1.38831 * 120.06839 * 359.95623 * 13 12 11 15 15 O 1.35527 * 120.16025 * 180.02562 * 14 13 12 16 16 C 1.34817 * 116.99627 * 354.39561 * 15 14 13 17 17 H 1.07998 * 120.00286 * 5.06815 * 16 15 14 18 18 C 1.38705 * 119.99676 * 185.06799 * 16 15 14 19 19 N 1.31514 * 119.99991 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47413 * 359.97438 * 20 18 16 22 22 H 1.48496 * 109.47271 * 120.00166 * 20 18 16 23 23 H 1.48507 * 109.46838 * 239.99679 * 20 18 16 24 24 H 1.09004 * 109.46840 * 299.99518 * 1 2 3 25 25 H 1.09000 * 109.47712 * 59.99595 * 1 2 3 26 26 H 1.09004 * 109.47059 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47208 * 180.02562 * 3 2 1 28 28 H 1.09000 * 109.47271 * 300.00115 * 3 2 1 29 29 H 1.08996 * 109.47130 * 60.00858 * 3 2 1 30 30 H 1.09004 * 109.46904 * 299.99602 * 4 2 1 31 31 H 1.09000 * 109.47598 * 59.99728 * 4 2 1 32 32 H 1.09000 * 109.46923 * 180.02562 * 4 2 1 33 33 H 1.08999 * 109.46796 * 300.00141 * 5 2 1 34 34 H 1.08995 * 109.47178 * 179.97438 * 5 2 1 35 35 H 0.97003 * 120.00039 * 0.02562 * 6 5 2 36 36 H 1.07997 * 120.04248 * 0.26955 * 10 9 7 37 37 H 1.07992 * 119.83718 * 179.97438 * 11 10 9 38 38 H 1.08000 * 119.79251 * 179.97438 * 12 11 10 39 39 H 1.07996 * 119.96390 * 179.97438 * 13 12 11 40 40 H 0.96997 * 120.00153 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2491 6 7 1.5517 -2.1025 1.2491 7 6 1.8769 -2.9323 2.2601 8 8 2.5753 -2.5344 3.1725 9 6 1.3847 -4.3231 2.2603 10 6 0.5819 -4.7843 1.2147 11 6 0.1256 -6.0849 1.2204 12 6 0.4590 -6.9387 2.2597 13 6 1.2507 -6.4966 3.3003 14 6 1.7196 -5.1899 3.3110 15 8 2.4975 -4.7540 4.3316 16 6 2.6847 -5.6012 5.3635 17 1 2.2921 -6.6062 5.3152 18 6 3.3814 -5.1821 6.4872 19 7 3.8599 -3.9585 6.5459 20 14 3.6413 -6.3562 7.9167 21 1 3.0101 -7.6636 7.6045 22 1 5.0966 -6.5495 8.1402 23 1 3.0234 -5.7887 9.1420 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6765 -1.7489 -1.2494 31 1 1.6765 -0.2073 -2.1393 32 1 3.1299 -0.7216 -1.2492 33 1 1.6767 -0.2075 2.1391 34 1 3.1300 -0.7216 1.2489 35 1 0.9943 -2.4198 0.5214 36 1 0.3228 -4.1241 0.4002 37 1 -0.4954 -6.4400 0.4114 38 1 0.0965 -7.9560 2.2558 39 1 1.5058 -7.1679 4.1068 40 1 4.3469 -3.6653 7.3318 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194276662.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:42 Heat of formation + Delta-G solvation = -72.192316 kcal Electronic energy + Delta-G solvation = -21578.982700 eV Core-core repulsion = 18358.233865 eV Total energy + Delta-G solvation = -3220.748835 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.33878 -40.07051 -38.37627 -37.99606 -34.55859 -34.29431 -32.00964 -30.57245 -28.20792 -28.12085 -27.66982 -27.05885 -24.36518 -23.02847 -21.48171 -20.19954 -19.82898 -19.05629 -17.85948 -17.06919 -16.40916 -16.34729 -15.96056 -15.89754 -15.59725 -15.31442 -14.94055 -14.92625 -14.61840 -14.27522 -14.08094 -13.73954 -13.55102 -13.02003 -12.98869 -12.71256 -12.69411 -12.55066 -12.54026 -12.33799 -12.09629 -11.77601 -11.69657 -11.60077 -11.42885 -10.84952 -10.61626 -10.09379 -9.77522 -9.03816 -8.45054 -6.16211 0.12318 0.72347 1.32006 1.42869 1.52195 2.10406 2.15564 2.31374 2.87572 3.22488 3.46650 3.68621 3.85584 3.96323 3.99158 4.08242 4.29170 4.45949 4.51892 4.57010 4.62256 4.73388 4.85336 4.86572 4.90377 4.98104 5.04153 5.05860 5.07601 5.13462 5.16369 5.28461 5.44111 5.47160 5.48132 5.58038 5.61353 5.69362 5.96069 6.16964 6.70397 6.94276 7.49458 7.80572 8.75953 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019235 B = 0.004920 C = 0.004031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.312028 B = 5689.485194 C = 6944.720086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 C -0.138 4.138 4 C -0.141 4.141 5 C 0.131 3.869 6 N -0.713 5.713 7 C 0.545 3.455 8 O -0.572 6.572 9 C -0.245 4.245 10 C -0.031 4.031 11 C -0.199 4.199 12 C -0.040 4.040 13 C -0.257 4.257 14 C 0.148 3.852 15 O -0.190 6.190 16 C -0.428 4.428 17 H 0.108 0.892 18 C -0.023 4.023 19 N -0.907 5.907 20 Si 1.023 2.977 21 H -0.245 1.245 22 H -0.268 1.268 23 H -0.269 1.269 24 H 0.048 0.952 25 H 0.081 0.919 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.042 0.958 34 H 0.043 0.957 35 H 0.409 0.591 36 H 0.158 0.842 37 H 0.166 0.834 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.317 2.145 -16.803 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.073 4.073 3 C -0.196 4.196 4 C -0.198 4.198 5 C 0.007 3.993 6 N -0.369 5.369 7 C 0.334 3.666 8 O -0.451 6.451 9 C -0.250 4.250 10 C -0.049 4.049 11 C -0.217 4.217 12 C -0.058 4.058 13 C -0.276 4.276 14 C 0.093 3.907 15 O -0.092 6.092 16 C -0.504 4.504 17 H 0.125 0.875 18 C -0.222 4.222 19 N -0.543 5.543 20 Si 0.842 3.158 21 H -0.168 1.168 22 H -0.193 1.193 23 H -0.194 1.194 24 H 0.067 0.933 25 H 0.099 0.901 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.249 0.751 36 H 0.175 0.825 37 H 0.183 0.817 38 H 0.172 0.828 39 H 0.141 0.859 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.564 2.813 -15.977 18.345 hybrid contribution 0.435 -0.346 1.004 1.148 sum -8.129 2.467 -14.973 17.215 Atomic orbital electron populations 1.21896 0.92960 1.02347 1.02666 1.20780 0.97040 0.96199 0.93251 1.21817 1.01102 0.93819 1.02879 1.21896 1.00946 1.00382 0.96625 1.21396 0.97945 0.81284 0.98649 1.45681 1.54567 1.11811 1.24814 1.18596 0.79892 0.86207 0.81860 1.90926 1.39230 1.77640 1.37350 1.19316 1.11947 0.93515 1.00223 1.21281 0.92142 0.96934 0.94535 1.21183 1.05937 0.93393 1.01231 1.21440 0.92462 1.00592 0.91308 1.21300 1.07413 0.95166 1.03742 1.20105 0.88735 0.93315 0.88590 1.84187 1.57081 1.42257 1.25714 1.22100 1.37760 0.95851 0.94648 0.87521 1.26785 0.95375 0.98858 1.01203 1.70334 1.34655 1.19089 1.30182 0.84486 0.78715 0.77284 0.75334 1.16759 1.19349 1.19394 0.93282 0.90057 0.92368 0.92805 0.89945 0.92841 0.92364 0.90061 0.93238 0.93961 0.93885 0.75137 0.82469 0.81694 0.82762 0.85912 0.92045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 8.30 71.98 0.60 -1.75 16 2 C -0.07 -1.42 0.78 -52.18 -0.04 -1.46 16 3 C -0.14 -2.38 8.47 71.98 0.61 -1.77 16 4 C -0.14 -2.33 8.30 71.98 0.60 -1.73 16 5 C 0.13 4.02 4.56 86.38 0.39 4.41 16 6 N -0.71 -23.45 4.91 -466.29 -2.29 -25.74 16 7 C 0.54 25.55 7.76 86.69 0.67 26.23 16 8 O -0.57 -34.90 15.17 16.88 0.26 -34.65 16 9 C -0.25 -10.89 5.89 -19.99 -0.12 -11.01 16 10 C -0.03 -0.93 9.54 22.52 0.21 -0.72 16 11 C -0.20 -5.32 10.03 22.25 0.22 -5.10 16 12 C -0.04 -1.25 10.03 22.30 0.22 -1.02 16 13 C -0.26 -11.12 9.16 22.36 0.20 -10.91 16 14 C 0.15 7.76 6.66 22.91 0.15 7.91 16 15 O -0.19 -12.32 7.84 0.74 0.01 -12.31 16 16 C -0.43 -26.28 9.49 67.93 0.64 -25.64 16 17 H 0.11 5.87 5.21 -2.91 -0.02 5.86 16 18 C -0.02 -1.40 5.49 84.85 0.47 -0.93 16 19 N -0.91 -60.24 13.67 21.62 0.30 -59.95 16 20 Si 1.02 44.81 29.55 68.60 2.03 46.83 16 21 H -0.24 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 24 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.06 0.93 6.86 -2.38 -0.02 0.92 16 27 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.93 6.86 -2.38 -0.02 0.91 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.41 9.95 4.19 -92.71 -0.39 9.56 16 36 H 0.16 3.26 6.40 -2.91 -0.02 3.24 16 37 H 0.17 2.81 8.06 -2.91 -0.02 2.79 16 38 H 0.15 3.51 8.06 -2.91 -0.02 3.49 16 39 H 0.12 5.39 5.64 -2.91 -0.02 5.37 16 40 H 0.27 16.40 8.31 -92.71 -0.77 15.63 16 Total: -1.00 -87.90 329.78 5.80 -82.11 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.66 Total: 27.19 kcal Atomic # 6 Polarization: -28.33 SS G_CDS: 4.84 Total: -23.49 kcal Atomic # 7 Polarization: -83.69 SS G_CDS: -1.99 Total: -85.68 kcal Atomic # 8 Polarization: -47.22 SS G_CDS: 0.26 Total: -46.96 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -87.90 5.80 -82.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194276662.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.913 kcal (2) G-P(sol) polarization free energy of solvation -87.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds