Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.52998 * 109.47348 * 59.99414 * 3 2 1 5 5 C 1.53002 * 109.46982 * 299.99494 * 3 2 1 6 6 C 1.50695 * 109.47046 * 179.97438 * 3 2 1 7 7 O 1.21292 * 120.00234 * 6.99658 * 6 3 2 8 8 N 1.34785 * 119.99905 * 187.00238 * 6 3 2 9 9 C 1.37100 * 119.99827 * 5.41647 * 8 6 3 10 10 H 1.07999 * 119.99846 * 313.05592 * 9 8 6 11 11 C 1.38942 * 119.99719 * 133.06374 * 9 8 6 12 12 N 1.31406 * 120.00410 * 3.83804 * 11 9 8 13 13 Si 1.86807 * 119.99775 * 183.84737 * 11 9 8 14 14 H 1.48503 * 109.47176 * 59.99665 * 13 11 9 15 15 H 1.48505 * 109.47176 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46737 * 299.99389 * 13 11 9 17 17 C 1.46493 * 119.99829 * 185.41973 * 8 6 3 18 18 C 1.50703 * 109.47418 * 94.51542 * 17 8 6 19 19 C 1.38235 * 120.00133 * 85.09504 * 18 17 8 20 20 C 1.38231 * 119.99903 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00109 * 0.27111 * 21 20 19 23 23 C 1.38230 * 119.99898 * 265.07695 * 18 17 8 24 24 H 1.08987 * 109.47511 * 300.00321 * 1 2 3 25 25 H 1.09001 * 109.46750 * 60.00743 * 1 2 3 26 26 H 1.09005 * 109.46521 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47042 * 189.28836 * 4 3 2 28 28 H 1.09004 * 109.47514 * 309.28502 * 4 3 2 29 29 H 1.09003 * 109.47152 * 69.28466 * 4 3 2 30 30 H 1.08999 * 109.47337 * 306.32166 * 5 3 2 31 31 H 1.08999 * 109.47111 * 66.31613 * 5 3 2 32 32 H 1.08993 * 109.47627 * 186.31797 * 5 3 2 33 33 H 0.97001 * 120.00536 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.47435 * 334.51275 * 17 8 6 35 35 H 1.09004 * 109.47277 * 214.51370 * 17 8 6 36 36 H 1.08000 * 120.00010 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.99878 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00030 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.99745 * 179.72958 * 22 21 20 40 40 H 1.07999 * 120.00477 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0648 1.2491 5 6 1.5588 2.0647 -1.2493 6 6 3.5124 1.1865 0.0006 7 8 4.0348 0.0993 -0.1269 8 7 4.2756 2.2883 0.1431 9 6 3.6884 3.5007 0.3983 10 1 2.8354 3.8203 -0.1819 11 6 4.1909 4.3181 1.4032 12 7 5.2737 3.9642 2.0582 13 14 3.3269 5.9202 1.8233 14 1 1.9355 5.6335 2.2560 15 1 4.0560 6.6023 2.9226 16 1 3.3021 6.7979 0.6258 17 6 5.7325 2.1904 0.0251 18 6 6.1450 2.5132 -1.3880 19 6 6.3372 3.8281 -1.7687 20 6 6.7160 4.1241 -3.0648 21 6 6.9032 3.1051 -3.9800 22 6 6.7060 1.7905 -3.6007 23 6 6.3314 1.4943 -2.3034 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 1.8635 3.1084 1.1700 28 1 0.4735 2.0090 1.3359 29 1 2.0171 1.6182 2.1314 30 1 1.7806 1.4703 -2.1357 31 1 0.4859 2.2489 -1.1947 32 1 2.0881 3.0156 -1.3078 33 1 5.6243 4.5346 2.7600 34 1 6.0500 1.1779 0.2739 35 1 6.2009 2.8968 0.7105 36 1 6.1914 4.6242 -1.0536 37 1 6.8658 5.1515 -3.3623 38 1 7.1995 3.3364 -4.9924 39 1 6.8480 0.9948 -4.3169 40 1 6.1820 0.4669 -2.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224021519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = -39.316824 kcal Electronic energy + Delta-G solvation = -22810.848302 eV Core-core repulsion = 19591.525055 eV Total energy + Delta-G solvation = -3219.323247 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.53983 -38.43023 -36.93332 -34.89921 -32.23236 -31.85942 -30.23376 -30.14687 -26.77730 -26.70072 -25.79349 -24.72628 -21.87152 -21.59285 -20.38957 -18.99851 -17.70316 -16.13771 -15.71676 -15.42988 -14.86794 -14.66683 -14.50101 -14.43787 -14.18112 -13.77764 -13.49208 -12.78607 -12.76029 -12.70789 -12.16828 -11.99173 -11.90580 -11.69425 -11.50848 -11.41553 -10.93048 -10.80978 -10.76937 -10.68338 -10.47431 -10.37696 -10.19403 -10.02583 -9.02494 -9.00297 -8.44811 -8.28661 -8.00255 -7.47366 -6.35889 -4.24849 1.98664 2.04665 3.05317 3.12708 3.13883 3.81226 3.96244 4.14226 4.47788 4.88959 5.11027 5.45966 5.52432 5.53925 5.60111 5.63933 5.69162 5.80661 5.90632 5.95432 5.95759 6.14471 6.16801 6.22448 6.23981 6.47573 6.49368 6.65450 6.66849 6.73248 6.84959 7.07755 7.11047 7.12369 7.23016 7.44284 7.56413 7.67956 7.80441 7.98323 8.31802 8.98427 9.44054 9.87429 10.58638 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.009127 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.926596 B = 3067.037160 C = 4484.043354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.364 6.364 3 C 0.114 3.886 4 C -0.178 4.178 5 C -0.175 4.175 6 C 0.501 3.499 7 O -0.581 6.581 8 N -0.435 5.435 9 C -0.334 4.334 10 H 0.094 0.906 11 C 0.048 3.952 12 N -0.865 5.865 13 Si 0.908 3.092 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.271 1.271 17 C 0.132 3.868 18 C -0.074 4.074 19 C -0.091 4.091 20 C -0.133 4.133 21 C -0.136 4.136 22 C -0.133 4.133 23 C -0.111 4.111 24 H 0.042 0.958 25 H 0.038 0.962 26 H 0.078 0.922 27 H 0.111 0.889 28 H 0.042 0.958 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.088 0.912 33 H 0.272 0.728 34 H 0.061 0.939 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.111 0.889 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 1.823 -5.270 6.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.283 6.283 3 C 0.072 3.928 4 C -0.235 4.235 5 C -0.233 4.233 6 C 0.288 3.712 7 O -0.463 6.463 8 N -0.155 5.155 9 C -0.461 4.461 10 H 0.111 0.889 11 C -0.157 4.157 12 N -0.501 5.501 13 Si 0.733 3.267 14 H -0.194 1.194 15 H -0.207 1.207 16 H -0.196 1.196 17 C 0.010 3.990 18 C -0.076 4.076 19 C -0.110 4.110 20 C -0.151 4.151 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.129 4.129 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.096 0.904 27 H 0.130 0.870 28 H 0.061 0.939 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.151 0.849 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.129 0.871 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.630 1.192 -5.138 5.894 hybrid contribution -0.704 1.104 0.148 1.318 sum -3.334 2.296 -4.990 6.426 Atomic orbital electron populations 1.22732 0.82742 1.01792 0.99814 1.88046 1.18145 1.27067 1.95003 1.21089 0.92845 0.83042 0.95838 1.22659 0.98995 1.05048 0.96831 1.22445 1.01155 1.02344 0.97344 1.19916 0.87359 0.84381 0.79537 1.90532 1.74439 1.27289 1.54076 1.43109 1.03859 1.06072 1.62469 1.19439 1.15258 0.95226 1.16223 0.88897 1.25511 0.95946 0.99318 0.94954 1.69515 1.20052 1.38180 1.22395 0.86301 0.79897 0.81796 0.78669 1.19395 1.20675 1.19634 1.20806 0.83341 1.03150 0.91697 1.20670 0.96155 0.92909 0.97834 1.21146 0.97426 0.96721 0.95685 1.21071 1.01513 0.98445 0.94114 1.20947 1.02467 0.93194 0.98853 1.21019 1.01603 0.96181 0.96268 1.21252 0.98959 0.99594 0.93136 0.93989 0.94348 0.90352 0.87032 0.93870 0.92477 0.92541 0.92564 0.89317 0.91688 0.92011 0.84882 0.85785 0.87033 0.87248 0.87112 0.86299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 10.23 101.05 1.03 1.44 16 2 O -0.36 -7.73 9.89 -55.04 -0.54 -8.27 16 3 C 0.11 2.42 0.85 -91.77 -0.08 2.34 16 4 C -0.18 -3.53 7.83 37.16 0.29 -3.23 16 5 C -0.18 -3.23 7.85 37.16 0.29 -2.94 16 6 C 0.50 12.47 6.53 -10.98 -0.07 12.40 16 7 O -0.58 -16.14 16.01 -14.26 -0.23 -16.37 16 8 N -0.44 -10.50 2.51 -116.10 -0.29 -10.79 16 9 C -0.33 -7.68 5.59 -14.93 -0.08 -7.77 16 10 H 0.09 2.04 4.36 -52.49 -0.23 1.81 16 11 C 0.05 1.11 5.35 -17.47 -0.09 1.02 16 12 N -0.86 -21.09 10.80 55.49 0.60 -20.50 16 13 Si 0.91 17.98 29.37 -169.99 -4.99 12.98 16 14 H -0.27 -5.23 7.11 56.52 0.40 -4.82 16 15 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.27 -5.31 7.11 56.52 0.40 -4.90 16 17 C 0.13 3.12 5.28 -5.20 -0.03 3.10 16 18 C -0.07 -1.57 5.44 -104.62 -0.57 -2.14 16 19 C -0.09 -1.78 9.72 -39.59 -0.38 -2.17 16 20 C -0.13 -2.25 10.05 -39.59 -0.40 -2.65 16 21 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 22 C -0.13 -2.27 10.05 -39.58 -0.40 -2.67 16 23 C -0.11 -2.21 9.68 -39.58 -0.38 -2.59 16 24 H 0.04 0.60 6.22 -51.94 -0.32 0.27 16 25 H 0.04 0.53 6.56 -51.93 -0.34 0.19 16 26 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.11 2.27 4.57 -51.93 -0.24 2.04 16 28 H 0.04 0.72 6.09 -51.93 -0.32 0.40 16 29 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 30 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.06 0.86 6.89 -51.93 -0.36 0.51 16 32 H 0.09 1.68 5.20 -51.93 -0.27 1.41 16 33 H 0.27 6.35 8.31 -40.82 -0.34 6.02 16 34 H 0.06 1.53 7.14 -51.93 -0.37 1.16 16 35 H 0.13 3.28 5.20 -51.93 -0.27 3.01 16 36 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 37 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 38 H 0.11 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 40 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 319.62 15.07 4.82 4.82 Total: -1.00 -28.12 319.62 -7.14 -35.26 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -5.23 Total: 11.30 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: -1.27 Total: -8.43 kcal Atomic # 7 Polarization: -31.59 SS G_CDS: 0.31 Total: -31.28 kcal Atomic # 8 Polarization: -23.87 SS G_CDS: -0.77 Total: -24.64 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -4.99 Total: 12.98 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -28.12 -7.14 -35.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224021519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.062 kcal (2) G-P(sol) polarization free energy of solvation -28.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds