Wall clock time and date at job start Mon Mar 30 2020 02:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99748 * 2 1 4 4 C 1.52998 * 109.47348 * 59.99414 * 3 2 1 5 5 C 1.53002 * 109.46982 * 299.99494 * 3 2 1 6 6 C 1.50695 * 109.47046 * 179.97438 * 3 2 1 7 7 O 1.21292 * 120.00234 * 6.99658 * 6 3 2 8 8 N 1.34785 * 119.99905 * 187.00238 * 6 3 2 9 9 C 1.37100 * 119.99827 * 5.41647 * 8 6 3 10 10 H 1.07999 * 119.99846 * 313.05592 * 9 8 6 11 11 C 1.38942 * 119.99719 * 133.06374 * 9 8 6 12 12 N 1.31406 * 120.00410 * 3.83804 * 11 9 8 13 13 Si 1.86807 * 119.99775 * 183.84737 * 11 9 8 14 14 H 1.48503 * 109.47176 * 59.99665 * 13 11 9 15 15 H 1.48505 * 109.47176 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46737 * 299.99389 * 13 11 9 17 17 C 1.46493 * 119.99829 * 185.41973 * 8 6 3 18 18 C 1.50703 * 109.47418 * 94.51542 * 17 8 6 19 19 C 1.38235 * 120.00133 * 85.09504 * 18 17 8 20 20 C 1.38231 * 119.99903 * 179.97438 * 19 18 17 21 21 C 1.38232 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.38234 * 120.00109 * 0.27111 * 21 20 19 23 23 C 1.38230 * 119.99898 * 265.07695 * 18 17 8 24 24 H 1.08987 * 109.47511 * 300.00321 * 1 2 3 25 25 H 1.09001 * 109.46750 * 60.00743 * 1 2 3 26 26 H 1.09005 * 109.46521 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47042 * 189.28836 * 4 3 2 28 28 H 1.09004 * 109.47514 * 309.28502 * 4 3 2 29 29 H 1.09003 * 109.47152 * 69.28466 * 4 3 2 30 30 H 1.08999 * 109.47337 * 306.32166 * 5 3 2 31 31 H 1.08999 * 109.47111 * 66.31613 * 5 3 2 32 32 H 1.08993 * 109.47627 * 186.31797 * 5 3 2 33 33 H 0.97001 * 120.00536 * 180.02562 * 12 11 9 34 34 H 1.08998 * 109.47435 * 334.51275 * 17 8 6 35 35 H 1.09004 * 109.47277 * 214.51370 * 17 8 6 36 36 H 1.08000 * 120.00010 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.99878 * 179.97438 * 20 19 18 38 38 H 1.08001 * 120.00030 * 180.02562 * 21 20 19 39 39 H 1.07998 * 119.99745 * 179.72958 * 22 21 20 40 40 H 1.07999 * 120.00477 * 359.97438 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0648 1.2491 5 6 1.5588 2.0647 -1.2493 6 6 3.5124 1.1865 0.0006 7 8 4.0348 0.0993 -0.1269 8 7 4.2756 2.2883 0.1431 9 6 3.6884 3.5007 0.3983 10 1 2.8354 3.8203 -0.1819 11 6 4.1909 4.3181 1.4032 12 7 5.2737 3.9642 2.0582 13 14 3.3269 5.9202 1.8233 14 1 1.9355 5.6335 2.2560 15 1 4.0560 6.6023 2.9226 16 1 3.3021 6.7979 0.6258 17 6 5.7325 2.1904 0.0251 18 6 6.1450 2.5132 -1.3880 19 6 6.3372 3.8281 -1.7687 20 6 6.7160 4.1241 -3.0648 21 6 6.9032 3.1051 -3.9800 22 6 6.7060 1.7905 -3.6007 23 6 6.3314 1.4943 -2.3034 24 1 -0.3634 0.5138 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 1.8635 3.1084 1.1700 28 1 0.4735 2.0090 1.3359 29 1 2.0171 1.6182 2.1314 30 1 1.7806 1.4703 -2.1357 31 1 0.4859 2.2489 -1.1947 32 1 2.0881 3.0156 -1.3078 33 1 5.6243 4.5346 2.7600 34 1 6.0500 1.1779 0.2739 35 1 6.2009 2.8968 0.7105 36 1 6.1914 4.6242 -1.0536 37 1 6.8658 5.1515 -3.3623 38 1 7.1995 3.3364 -4.9924 39 1 6.8480 0.9948 -4.3169 40 1 6.1820 0.4669 -2.0058 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224021519.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:44 Heat of formation + Delta-G solvation = -54.350940 kcal Electronic energy + Delta-G solvation = -22811.500231 eV Core-core repulsion = 19591.525055 eV Total energy + Delta-G solvation = -3219.975175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.27560 -39.91470 -38.57573 -36.79448 -33.80997 -33.65078 -31.74554 -31.66998 -28.30893 -28.02574 -27.52931 -26.48903 -23.32041 -23.19844 -21.95222 -20.78690 -19.40207 -17.69743 -17.33132 -17.12497 -16.56454 -16.23128 -16.05087 -15.96604 -15.73062 -15.38843 -15.09979 -14.38906 -14.19358 -14.17914 -13.66622 -13.56337 -13.46232 -13.31968 -13.09977 -13.05682 -12.52605 -12.48170 -12.28890 -12.21687 -12.07837 -11.91378 -11.74507 -11.63028 -10.79177 -10.48965 -10.26475 -9.73015 -9.53593 -9.35549 -8.15537 -6.10094 0.52971 0.59771 1.48779 1.51118 1.58912 1.99766 2.29044 2.54565 2.99198 3.13510 3.49828 3.97536 4.07223 4.11624 4.19883 4.21435 4.27784 4.39574 4.51180 4.53846 4.60730 4.66924 4.75959 4.76701 4.84297 4.89593 4.92520 5.11062 5.16855 5.21112 5.27631 5.39317 5.52184 5.64727 5.66428 5.69594 5.94651 6.13239 6.24286 6.32440 6.50151 7.15171 7.57181 8.02381 8.80360 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.012742 B = 0.009127 C = 0.006243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2196.926596 B = 3067.037160 C = 4484.043354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.400 6.400 3 C 0.115 3.885 4 C -0.169 4.169 5 C -0.166 4.166 6 C 0.476 3.524 7 O -0.627 6.627 8 N -0.436 5.436 9 C -0.339 4.339 10 H 0.109 0.891 11 C 0.011 3.989 12 N -0.897 5.897 13 Si 0.969 3.031 14 H -0.256 1.256 15 H -0.289 1.289 16 H -0.261 1.261 17 C 0.136 3.864 18 C -0.097 4.097 19 C -0.105 4.105 20 C -0.125 4.125 21 C -0.123 4.123 22 C -0.128 4.128 23 C -0.132 4.132 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.080 0.920 29 H 0.029 0.971 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.081 0.919 33 H 0.271 0.729 34 H 0.029 0.971 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.140 0.860 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.836 3.897 -7.436 9.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.320 6.320 3 C 0.073 3.927 4 C -0.226 4.226 5 C -0.223 4.223 6 C 0.266 3.734 7 O -0.514 6.514 8 N -0.154 5.154 9 C -0.466 4.466 10 H 0.126 0.874 11 C -0.192 4.192 12 N -0.535 5.535 13 Si 0.792 3.208 14 H -0.180 1.180 15 H -0.215 1.215 16 H -0.185 1.185 17 C 0.013 3.987 18 C -0.098 4.098 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.141 4.141 22 C -0.145 4.145 23 C -0.151 4.151 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.116 0.884 27 H 0.125 0.875 28 H 0.098 0.902 29 H 0.048 0.952 30 H 0.067 0.933 31 H 0.112 0.888 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.048 0.952 35 H 0.137 0.863 36 H 0.129 0.871 37 H 0.164 0.836 38 H 0.172 0.828 39 H 0.158 0.842 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.331 3.284 -7.314 9.112 hybrid contribution -0.128 0.407 0.791 0.899 sum -4.459 3.691 -6.523 8.721 Atomic orbital electron populations 1.23052 0.79705 1.03749 1.01347 1.88002 1.21482 1.27140 1.95333 1.21022 0.90118 0.83836 0.97691 1.22556 1.01071 1.03970 0.95014 1.22359 1.03320 1.01130 0.95469 1.20816 0.89556 0.83826 0.79241 1.90479 1.75722 1.28817 1.56386 1.43340 1.03987 1.06570 1.61497 1.19778 1.15510 0.94689 1.16615 0.87426 1.26267 0.96150 1.02222 0.94529 1.69668 1.21445 1.39457 1.22922 0.85341 0.79147 0.77922 0.78350 1.18039 1.21458 1.18532 1.20622 0.83669 1.00669 0.93728 1.20443 0.98475 0.94323 0.96569 1.21090 0.98768 0.95328 0.97153 1.21433 0.99604 1.00599 0.92643 1.21423 1.00137 0.91997 1.00542 1.21344 1.00040 0.98051 0.95101 1.21183 1.00856 0.98252 0.94787 0.92630 0.92367 0.88440 0.87530 0.90182 0.95198 0.93287 0.88796 0.90039 0.91834 0.95191 0.86299 0.87075 0.83623 0.82832 0.84212 0.88565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 10.23 113.37 1.16 1.65 16 2 O -0.40 -16.88 9.89 -130.04 -1.29 -18.17 16 3 C 0.12 4.89 0.85 -11.54 -0.01 4.88 16 4 C -0.17 -6.53 7.83 71.98 0.56 -5.97 16 5 C -0.17 -5.81 7.85 71.98 0.57 -5.25 16 6 C 0.48 24.86 6.53 87.65 0.57 25.43 16 7 O -0.63 -37.29 16.01 15.88 0.25 -37.03 16 8 N -0.44 -22.01 2.51 -639.61 -1.60 -23.61 16 9 C -0.34 -15.80 5.59 84.04 0.47 -15.33 16 10 H 0.11 4.64 4.36 -2.91 -0.01 4.63 16 11 C 0.01 0.50 5.35 84.93 0.45 0.95 16 12 N -0.90 -45.42 10.80 21.66 0.23 -45.19 16 13 Si 0.97 36.16 29.37 68.60 2.01 38.17 16 14 H -0.26 -9.01 7.11 99.48 0.71 -8.30 16 15 H -0.29 -11.07 7.11 99.48 0.71 -10.36 16 16 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 17 C 0.14 6.90 5.28 85.64 0.45 7.35 16 18 C -0.10 -4.29 5.44 -19.87 -0.11 -4.40 16 19 C -0.10 -4.10 9.72 22.27 0.22 -3.88 16 20 C -0.13 -3.86 10.05 22.27 0.22 -3.64 16 21 C -0.12 -3.47 10.05 22.27 0.22 -3.24 16 22 C -0.13 -4.13 10.05 22.27 0.22 -3.90 16 23 C -0.13 -5.44 9.68 22.27 0.22 -5.23 16 24 H 0.06 1.41 6.22 -2.39 -0.01 1.39 16 25 H 0.06 1.41 6.56 -2.39 -0.02 1.39 16 26 H 0.10 2.36 8.14 -2.38 -0.02 2.34 16 27 H 0.11 4.21 4.57 -2.39 -0.01 4.20 16 28 H 0.08 2.45 6.09 -2.38 -0.01 2.43 16 29 H 0.03 1.27 8.11 -2.39 -0.02 1.26 16 30 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.09 2.55 6.89 -2.39 -0.02 2.53 16 32 H 0.08 2.97 5.20 -2.39 -0.01 2.95 16 33 H 0.27 13.11 8.31 -92.71 -0.77 12.34 16 34 H 0.03 1.64 7.14 -2.39 -0.02 1.62 16 35 H 0.12 6.34 5.20 -2.38 -0.01 6.32 16 36 H 0.11 4.56 8.06 -2.91 -0.02 4.54 16 37 H 0.15 3.51 8.06 -2.91 -0.02 3.48 16 38 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.14 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.10 4.31 8.06 -2.91 -0.02 4.28 16 Total: -1.00 -65.39 319.62 5.88 -59.50 By element: Atomic # 1 Polarization: 35.87 SS G_CDS: 1.05 Total: 36.92 kcal Atomic # 6 Polarization: -15.81 SS G_CDS: 5.22 Total: -10.59 kcal Atomic # 7 Polarization: -67.43 SS G_CDS: -1.37 Total: -68.80 kcal Atomic # 8 Polarization: -54.17 SS G_CDS: -1.03 Total: -55.20 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.01 Total: 38.17 kcal Total: -65.39 5.88 -59.50 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224021519.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.151 kcal (2) G-P(sol) polarization free energy of solvation -65.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds