Wall clock time and date at job start Mon Mar 30 2020 01:29:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47470 * 240.00304 * 2 1 3 5 5 C 1.50703 * 109.47195 * 59.99363 * 4 2 1 6 6 H 1.08003 * 119.99628 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00202 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00291 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99997 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47125 * 89.99751 * 9 7 5 11 11 H 1.48498 * 109.47222 * 209.99602 * 9 7 5 12 12 H 1.48498 * 109.47164 * 330.00207 * 9 7 5 13 13 C 1.52993 * 109.47582 * 119.99866 * 2 1 3 14 14 N 1.46506 * 109.47146 * 300.00517 * 13 2 1 15 15 C 1.39709 * 119.99660 * 179.97438 * 14 13 2 16 16 C 1.39026 * 120.00525 * 359.97401 * 15 14 13 17 17 C 1.38208 * 120.23228 * 180.02562 * 16 15 14 18 18 C 1.38014 * 120.23241 * 359.97359 * 17 16 15 19 19 C 1.39629 * 119.99973 * 0.02562 * 18 17 16 20 20 C 1.47746 * 120.11452 * 180.02562 * 19 18 17 21 21 O 1.21476 * 119.99993 * 179.97438 * 20 19 18 22 22 O 1.34715 * 120.00169 * 359.97438 * 20 19 18 23 23 C 1.38635 * 119.99791 * 179.97438 * 15 14 13 24 24 H 1.09002 * 109.47166 * 299.99757 * 1 2 3 25 25 H 1.09001 * 109.47664 * 60.00057 * 1 2 3 26 26 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47476 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47326 * 300.00145 * 3 2 1 29 29 H 1.09002 * 109.46970 * 60.00123 * 3 2 1 30 30 H 1.08990 * 109.47548 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47036 * 300.00052 * 4 2 1 32 32 H 0.97002 * 120.00398 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47749 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47222 * 59.99899 * 13 2 1 35 35 H 0.96999 * 120.00080 * 359.97438 * 14 13 2 36 36 H 1.07999 * 119.88830 * 0.02562 * 16 15 14 37 37 H 1.07995 * 119.88739 * 180.02562 * 17 16 15 38 38 H 1.08003 * 120.00060 * 179.97438 * 18 17 16 39 39 H 0.96695 * 116.99913 * 180.02562 * 22 20 19 40 40 H 1.08001 * 120.11314 * 359.70675 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8703 -0.4820 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9432 -2.0015 -3.9034 10 1 2.0839 -3.2118 -3.9487 11 1 3.7351 -1.9096 -5.1563 12 1 3.8636 -2.0913 -2.7415 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8889 -0.5083 3.7143 16 6 2.6874 -1.6392 3.8418 17 6 3.0234 -2.1160 5.0947 18 6 2.5690 -1.4726 6.2280 19 6 1.7665 -0.3360 6.1112 20 6 1.2791 0.3551 7.3227 21 8 0.5814 1.3440 7.2186 22 8 1.6085 -0.1115 8.5428 23 6 1.4271 0.1455 4.8462 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 1.6660 -0.1936 -5.6868 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 3.0464 -2.1468 2.9588 37 1 3.6444 -2.9947 5.1874 38 1 2.8335 -1.8488 7.2053 39 1 1.2657 0.3739 9.3056 40 1 0.8106 1.0269 4.7493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229673403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:03 Heat of formation + Delta-G solvation = -79.841253 kcal Electronic energy + Delta-G solvation = -20878.900702 eV Core-core repulsion = 17657.820184 eV Total energy + Delta-G solvation = -3221.080518 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.55860 -39.24939 -37.55623 -36.28696 -34.43985 -32.30493 -31.33426 -29.47912 -27.64754 -26.58060 -26.03447 -24.68228 -22.59914 -22.15648 -20.77826 -18.52849 -18.06712 -17.68673 -16.93449 -16.12158 -15.80653 -15.72698 -15.43694 -14.56917 -14.31797 -13.97929 -13.67490 -13.51100 -13.32607 -13.25955 -12.79907 -12.40811 -12.31486 -11.80618 -11.79115 -11.42631 -11.34066 -11.18171 -11.03505 -10.77613 -10.67226 -10.51477 -10.20924 -9.89204 -9.78887 -9.57248 -9.15741 -9.04206 -8.57909 -7.40767 -6.07941 -4.05617 0.61657 1.46087 2.46200 2.76932 3.26705 3.35176 3.36843 3.59006 3.78006 4.40899 4.72848 4.84945 5.07183 5.17236 5.23835 5.23943 5.38095 5.43854 5.56665 5.62517 5.74940 5.97612 6.04920 6.08961 6.15735 6.17065 6.28275 6.29148 6.36805 6.50772 6.56451 6.64040 6.84376 6.98052 7.00964 7.13284 7.30421 7.35663 7.67717 7.73775 7.79931 8.49099 8.96345 9.54190 11.04905 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036169 B = 0.003298 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.954363 B = 8487.554240 C = 9065.149145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.061 4.061 3 C -0.128 4.128 4 C -0.001 4.001 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.066 3.934 8 N -0.903 5.903 9 Si 0.876 3.124 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.266 1.266 13 C 0.128 3.872 14 N -0.735 5.735 15 C 0.216 3.784 16 C -0.164 4.164 17 C -0.084 4.084 18 C -0.132 4.132 19 C -0.084 4.084 20 C 0.528 3.472 21 O -0.516 6.516 22 O -0.512 6.512 23 C -0.139 4.139 24 H 0.032 0.968 25 H 0.072 0.928 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.072 0.928 29 H 0.032 0.968 30 H 0.017 0.983 31 H 0.013 0.987 32 H 0.263 0.737 33 H 0.057 0.943 34 H 0.057 0.943 35 H 0.402 0.598 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.130 0.870 39 H 0.412 0.588 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.356 -3.291 22.364 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.062 4.062 3 C -0.186 4.186 4 C -0.039 4.039 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.704 3.296 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.191 1.191 13 C 0.004 3.996 14 N -0.363 5.363 15 C 0.110 3.890 16 C -0.188 4.188 17 C -0.103 4.103 18 C -0.152 4.152 19 C -0.086 4.086 20 C 0.372 3.628 21 O -0.405 6.405 22 O -0.324 6.324 23 C -0.162 4.162 24 H 0.051 0.949 25 H 0.091 0.909 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.091 0.909 29 H 0.051 0.949 30 H 0.036 0.964 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.238 0.762 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.148 0.852 39 H 0.270 0.730 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 2.397 -3.342 21.595 21.984 hybrid contribution 0.124 -0.214 0.162 0.296 sum 2.522 -3.556 21.757 22.189 Atomic orbital electron populations 1.21766 0.94750 1.01211 1.00854 1.20649 0.95877 0.95944 0.93697 1.21763 1.00349 0.95599 1.00851 1.19589 0.96173 0.95428 0.92714 1.21080 1.31897 1.13389 0.88624 0.90414 1.25011 0.95714 0.96775 0.95980 1.69902 1.45884 1.40531 0.97908 0.86843 0.81249 0.83904 0.77637 1.20384 1.21487 1.19077 1.21661 0.98187 0.95838 0.83873 1.45031 1.56534 1.32777 1.01958 1.17714 0.93098 0.92599 0.85606 1.21000 1.01859 0.97393 0.98506 1.20874 0.98633 0.99225 0.91550 1.21096 0.99288 0.95583 0.99260 1.18639 1.02485 0.97775 0.89668 1.21051 0.76654 0.81533 0.83516 1.90887 1.36161 1.25949 1.87524 1.84572 1.72399 1.58834 1.16573 1.20603 1.03955 1.01975 0.89677 0.94893 0.90950 0.93465 0.93460 0.90949 0.94892 0.96439 0.96887 0.92755 0.92431 0.92440 0.76152 0.85303 0.85432 0.85167 0.72993 0.84918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 8.05 37.16 0.30 -1.91 16 2 C -0.06 -1.07 0.54 -154.51 -0.08 -1.16 16 3 C -0.13 -2.20 8.05 37.16 0.30 -1.90 16 4 C 0.00 -0.03 3.11 -27.88 -0.09 -0.11 16 5 C -0.51 -13.47 8.20 -34.44 -0.28 -13.75 16 6 H 0.08 2.19 5.92 -52.48 -0.31 1.88 16 7 C 0.07 1.85 5.47 -17.82 -0.10 1.75 16 8 N -0.90 -26.96 13.96 55.43 0.77 -26.19 16 9 Si 0.88 20.94 27.47 -169.99 -4.67 16.28 16 10 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.27 -6.07 6.54 56.52 0.37 -5.70 16 13 C 0.13 1.88 3.80 -4.04 -0.02 1.86 16 14 N -0.73 -9.66 5.14 -58.67 -0.30 -9.96 16 15 C 0.22 2.73 6.65 -83.83 -0.56 2.18 16 16 C -0.16 -1.90 9.31 -39.30 -0.37 -2.27 16 17 C -0.08 -0.84 10.02 -39.67 -0.40 -1.24 16 18 C -0.13 -1.35 9.61 -39.14 -0.38 -1.72 16 19 C -0.08 -0.99 5.87 -105.01 -0.62 -1.61 16 20 C 0.53 6.07 8.27 34.62 0.29 6.35 16 21 O -0.52 -7.36 17.13 -19.25 -0.33 -7.69 16 22 O -0.51 -4.11 12.68 -40.53 -0.51 -4.62 16 23 C -0.14 -1.74 9.44 -38.95 -0.37 -2.11 16 24 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 25 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.07 1.41 6.62 -51.93 -0.34 1.07 16 29 H 0.03 0.48 6.86 -51.93 -0.36 0.12 16 30 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 31 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.06 0.84 7.95 -51.93 -0.41 0.43 16 34 H 0.06 0.83 7.94 -51.93 -0.41 0.42 16 35 H 0.40 5.11 6.17 -40.82 -0.25 4.86 16 36 H 0.13 1.42 6.71 -52.49 -0.35 1.07 16 37 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 38 H 0.13 1.10 7.60 -52.48 -0.40 0.70 16 39 H 0.41 1.41 9.11 45.56 0.42 1.83 16 40 H 0.13 1.67 7.65 -52.49 -0.40 1.27 16 LS Contribution 326.95 15.07 4.93 4.93 Total: -1.00 -31.01 326.95 -7.20 -38.22 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -4.73 Total: 4.67 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -2.36 Total: -15.64 kcal Atomic # 7 Polarization: -36.62 SS G_CDS: 0.47 Total: -36.15 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -0.84 Total: -12.31 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.28 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.01 -7.20 -38.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229673403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.625 kcal (2) G-P(sol) polarization free energy of solvation -31.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds