Wall clock time and date at job start Mon Mar 30 2020 01:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46985 * 2 1 4 4 C 1.52997 * 109.47470 * 240.00304 * 2 1 3 5 5 C 1.50703 * 109.47195 * 59.99363 * 4 2 1 6 6 H 1.08003 * 119.99628 * 0.02562 * 5 4 2 7 7 C 1.37873 * 120.00202 * 180.02562 * 5 4 2 8 8 N 1.31516 * 120.00291 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 119.99997 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47125 * 89.99751 * 9 7 5 11 11 H 1.48498 * 109.47222 * 209.99602 * 9 7 5 12 12 H 1.48498 * 109.47164 * 330.00207 * 9 7 5 13 13 C 1.52993 * 109.47582 * 119.99866 * 2 1 3 14 14 N 1.46506 * 109.47146 * 300.00517 * 13 2 1 15 15 C 1.39709 * 119.99660 * 179.97438 * 14 13 2 16 16 C 1.39026 * 120.00525 * 359.97401 * 15 14 13 17 17 C 1.38208 * 120.23228 * 180.02562 * 16 15 14 18 18 C 1.38014 * 120.23241 * 359.97359 * 17 16 15 19 19 C 1.39629 * 119.99973 * 0.02562 * 18 17 16 20 20 C 1.47746 * 120.11452 * 180.02562 * 19 18 17 21 21 O 1.21476 * 119.99993 * 179.97438 * 20 19 18 22 22 O 1.34715 * 120.00169 * 359.97438 * 20 19 18 23 23 C 1.38635 * 119.99791 * 179.97438 * 15 14 13 24 24 H 1.09002 * 109.47166 * 299.99757 * 1 2 3 25 25 H 1.09001 * 109.47664 * 60.00057 * 1 2 3 26 26 H 1.09003 * 109.47034 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47476 * 180.02562 * 3 2 1 28 28 H 1.09001 * 109.47326 * 300.00145 * 3 2 1 29 29 H 1.09002 * 109.46970 * 60.00123 * 3 2 1 30 30 H 1.08990 * 109.47548 * 179.97438 * 4 2 1 31 31 H 1.09003 * 109.47036 * 300.00052 * 4 2 1 32 32 H 0.97002 * 120.00398 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47749 * 179.97438 * 13 2 1 34 34 H 1.09004 * 109.47222 * 59.99899 * 13 2 1 35 35 H 0.96999 * 120.00080 * 359.97438 * 14 13 2 36 36 H 1.07999 * 119.88830 * 0.02562 * 16 15 14 37 37 H 1.07995 * 119.88739 * 180.02562 * 17 16 15 38 38 H 1.08003 * 120.00060 * 179.97438 * 18 17 16 39 39 H 0.96695 * 116.99913 * 180.02562 * 22 20 19 40 40 H 1.08001 * 120.11314 * 359.70675 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5376 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3805 7 6 1.8703 -0.4820 -3.7320 8 7 1.4323 0.1382 -4.8058 9 14 2.9432 -2.0015 -3.9034 10 1 2.0839 -3.2118 -3.9487 11 1 3.7351 -1.9096 -5.1563 12 1 3.8636 -2.0913 -2.7415 13 6 2.0400 -0.7212 1.2492 14 7 1.5516 -0.0306 2.4454 15 6 1.8889 -0.5083 3.7143 16 6 2.6874 -1.6392 3.8418 17 6 3.0234 -2.1160 5.0947 18 6 2.5690 -1.4726 6.2280 19 6 1.7665 -0.3360 6.1112 20 6 1.2791 0.3551 7.3227 21 8 0.5814 1.3440 7.2186 22 8 1.6085 -0.1115 8.5428 23 6 1.4271 0.1455 4.8462 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 3.1299 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 1.6660 -0.1936 -5.6868 33 1 3.1300 -0.7216 1.2490 34 1 1.6767 -1.7489 1.2492 35 1 0.9942 0.7582 2.3564 36 1 3.0464 -2.1468 2.9588 37 1 3.6444 -2.9947 5.1874 38 1 2.8335 -1.8488 7.2053 39 1 1.2657 0.3739 9.3056 40 1 0.8106 1.0269 4.7493 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229673403.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:29:02 Heat of formation + Delta-G solvation = -99.403970 kcal Electronic energy + Delta-G solvation = -20879.749005 eV Core-core repulsion = 17657.820184 eV Total energy + Delta-G solvation = -3221.928821 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.40620 -40.21253 -38.80593 -37.08294 -35.66895 -34.22749 -32.17295 -30.68292 -29.29196 -28.00884 -27.19090 -25.64056 -24.23218 -23.06991 -21.72200 -19.71068 -19.13655 -18.88533 -18.58580 -17.01343 -16.74373 -16.65141 -16.53900 -16.05770 -15.79675 -15.21979 -14.75868 -14.60345 -14.52333 -14.34787 -14.15368 -14.10550 -13.59619 -12.93340 -12.83852 -12.67581 -12.66087 -12.56587 -12.29818 -12.28130 -12.08852 -11.73987 -11.64497 -11.55687 -11.16321 -10.97529 -10.89433 -10.69713 -10.00112 -8.35048 -8.21290 -6.22494 -0.24600 0.62726 1.38531 1.40437 1.50777 1.60352 2.01707 2.40700 2.59846 2.93148 3.14314 3.91462 3.97459 4.04787 4.08303 4.20000 4.24334 4.37804 4.52463 4.62154 4.72498 4.74742 4.80585 4.95335 4.96519 5.04070 5.08034 5.28950 5.32029 5.36819 5.38388 5.40842 5.53727 5.55996 5.59916 5.68244 5.76177 5.83239 6.34465 6.43263 6.80045 6.85391 6.97936 7.40400 8.94834 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.036169 B = 0.003298 C = 0.003088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.954363 B = 8487.554240 C = 9065.149145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.058 4.058 3 C -0.123 4.123 4 C -0.001 4.001 5 C -0.506 4.506 6 H 0.044 0.956 7 C 0.000 4.000 8 N -0.956 5.956 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.292 1.292 12 H -0.243 1.243 13 C 0.143 3.857 14 N -0.738 5.738 15 C 0.203 3.797 16 C -0.170 4.170 17 C -0.080 4.080 18 C -0.122 4.122 19 C -0.100 4.100 20 C 0.533 3.467 21 O -0.552 6.552 22 O -0.500 6.500 23 C -0.151 4.151 24 H 0.058 0.942 25 H 0.038 0.962 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.038 0.962 29 H 0.058 0.942 30 H 0.021 0.979 31 H 0.019 0.981 32 H 0.262 0.738 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.136 0.864 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.432 0.568 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.888 -5.461 25.166 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.059 4.059 3 C -0.180 4.180 4 C -0.039 4.039 5 C -0.544 4.544 6 H 0.062 0.938 7 C -0.196 4.196 8 N -0.598 5.598 9 Si 0.766 3.234 10 H -0.196 1.196 11 H -0.219 1.219 12 H -0.166 1.166 13 C 0.019 3.981 14 N -0.367 5.367 15 C 0.098 3.902 16 C -0.193 4.193 17 C -0.098 4.098 18 C -0.142 4.142 19 C -0.101 4.101 20 C 0.379 3.621 21 O -0.445 6.445 22 O -0.314 6.314 23 C -0.175 4.175 24 H 0.077 0.923 25 H 0.057 0.943 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.037 0.963 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.238 0.762 36 H 0.154 0.846 37 H 0.176 0.824 38 H 0.170 0.830 39 H 0.294 0.706 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 3.939 -5.525 24.470 25.393 hybrid contribution -0.383 0.501 -0.575 0.854 sum 3.556 -5.024 23.895 24.675 Atomic orbital electron populations 1.21681 0.94703 1.01162 1.00480 1.20527 0.95893 0.95870 0.93581 1.21679 1.00331 0.95520 1.00482 1.19551 0.96171 0.95534 0.92610 1.21415 1.30260 1.12194 0.90508 0.93811 1.25942 0.97586 1.00304 0.95735 1.70069 1.48322 1.42894 0.98515 0.85791 0.79707 0.79834 0.78103 1.19603 1.21860 1.16615 1.21360 0.98355 0.95599 0.82829 1.44844 1.57128 1.32959 1.01778 1.17797 0.93961 0.93334 0.85099 1.21232 1.01444 0.96958 0.99620 1.21228 0.98155 0.99767 0.90649 1.21387 0.97847 0.94483 1.00494 1.18820 1.03169 0.98594 0.89552 1.21041 0.75854 0.80819 0.84371 1.90875 1.37917 1.27554 1.88130 1.84516 1.71867 1.58670 1.16316 1.20601 1.04458 1.02091 0.90309 0.92266 0.94306 0.93296 0.93322 0.94297 0.92263 0.96112 0.96275 0.92925 0.91859 0.91805 0.76152 0.84614 0.82394 0.83034 0.70564 0.85843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 2 C -0.06 -1.99 0.54 -52.18 -0.03 -2.02 16 3 C -0.12 -4.18 8.05 71.98 0.58 -3.60 16 4 C 0.00 -0.04 3.11 29.85 0.09 0.06 16 5 C -0.51 -27.23 8.20 25.60 0.21 -27.02 16 6 H 0.04 2.60 5.92 -2.91 -0.02 2.58 16 7 C 0.00 0.00 5.47 84.65 0.46 0.46 16 8 N -0.96 -59.11 13.96 21.45 0.30 -58.81 16 9 Si 0.94 42.97 27.47 68.60 1.88 44.85 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.24 -10.08 6.54 99.48 0.65 -9.42 16 13 C 0.14 3.85 3.80 86.38 0.33 4.17 16 14 N -0.74 -17.96 5.14 -339.52 -1.74 -19.70 16 15 C 0.20 4.72 6.65 38.17 0.25 4.97 16 16 C -0.17 -3.40 9.31 22.45 0.21 -3.19 16 17 C -0.08 -1.28 10.02 22.21 0.22 -1.05 16 18 C -0.12 -2.07 9.61 22.55 0.22 -1.86 16 19 C -0.10 -2.15 5.87 -20.11 -0.12 -2.27 16 20 C 0.53 11.39 8.27 70.34 0.58 11.97 16 21 O -0.55 -15.43 17.13 19.91 0.34 -15.09 16 22 O -0.50 -6.66 12.68 -56.25 -0.71 -7.37 16 23 C -0.15 -3.62 9.44 22.68 0.21 -3.40 16 24 H 0.06 1.68 6.86 -2.39 -0.02 1.66 16 25 H 0.04 1.56 6.62 -2.39 -0.02 1.54 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.56 6.62 -2.39 -0.02 1.55 16 29 H 0.06 1.68 6.86 -2.39 -0.02 1.66 16 30 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 31 H 0.02 0.80 7.57 -2.39 -0.02 0.78 16 32 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 33 H 0.06 1.65 7.95 -2.39 -0.02 1.63 16 34 H 0.06 1.66 7.94 -2.38 -0.02 1.64 16 35 H 0.40 9.59 6.17 -92.71 -0.57 9.02 16 36 H 0.14 2.51 6.71 -2.91 -0.02 2.49 16 37 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.15 1.91 7.60 -2.91 -0.02 1.89 16 39 H 0.43 1.81 9.11 -74.06 -0.67 1.14 16 40 H 0.12 3.10 7.65 -2.91 -0.02 3.07 16 Total: -1.00 -68.78 326.95 3.64 -65.14 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: -0.23 Total: 17.37 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: 3.80 Total: -26.38 kcal Atomic # 7 Polarization: -77.07 SS G_CDS: -1.44 Total: -78.51 kcal Atomic # 8 Polarization: -22.09 SS G_CDS: -0.37 Total: -22.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 1.88 Total: 44.85 kcal Total: -68.78 3.64 -65.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229673403.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.266 kcal (2) G-P(sol) polarization free energy of solvation -68.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds