Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00366 * 2 1 4 4 C 1.53008 * 109.46984 * 60.00334 * 3 2 1 5 5 C 1.52994 * 109.47298 * 300.00322 * 3 2 1 6 6 C 1.53002 * 109.47491 * 180.02562 * 3 2 1 7 7 C 1.50703 * 109.46996 * 302.81467 * 6 3 2 8 8 O 1.21285 * 119.99895 * 6.19985 * 7 6 3 9 9 N 1.34772 * 120.00342 * 186.19432 * 7 6 3 10 10 C 1.39231 * 120.00292 * 185.01878 * 9 7 6 11 11 C 1.39476 * 119.83718 * 34.79035 * 10 9 7 12 12 C 1.36376 * 120.17612 * 180.29839 * 11 10 9 13 13 C 1.40869 * 119.82044 * 359.48051 * 12 11 10 14 14 C 1.41160 * 120.16338 * 180.24782 * 13 12 11 15 15 H 1.07991 * 120.00345 * 210.44048 * 14 13 12 16 16 C 1.39900 * 119.99570 * 30.44195 * 14 13 12 17 17 N 1.30872 * 120.00345 * 9.13354 * 16 14 13 18 18 Si 1.86802 * 120.00035 * 189.13673 * 16 14 13 19 19 H 1.48497 * 109.47116 * 59.99312 * 18 16 14 20 20 H 1.48495 * 109.47390 * 179.97438 * 18 16 14 21 21 H 1.48512 * 109.46792 * 299.99775 * 18 16 14 22 22 C 1.40873 * 119.67546 * 0.51897 * 13 12 11 23 23 C 1.36375 * 119.82490 * 359.73017 * 22 13 12 24 24 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46927 * 299.99737 * 1 2 3 26 26 H 1.08999 * 109.46860 * 59.99859 * 1 2 3 27 27 H 1.08998 * 109.47094 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46412 * 299.99978 * 4 3 2 29 29 H 1.09004 * 109.46867 * 59.99818 * 4 3 2 30 30 H 1.08995 * 109.47257 * 305.90565 * 5 3 2 31 31 H 1.09002 * 109.47449 * 65.90888 * 5 3 2 32 32 H 1.09010 * 109.47362 * 185.90653 * 5 3 2 33 33 H 1.08999 * 109.47348 * 182.81911 * 6 3 2 34 34 H 1.08994 * 109.47032 * 62.81145 * 6 3 2 35 35 H 0.97001 * 119.99463 * 5.01555 * 9 7 6 36 36 H 1.08006 * 119.91212 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.09121 * 179.69806 * 12 11 10 38 38 H 0.96999 * 120.00187 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.08585 * 179.71504 * 22 13 12 40 40 H 1.07997 * 119.90795 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5588 2.0647 -1.2491 6 6 3.5355 1.1846 -0.0006 7 6 3.9759 0.3771 1.1932 8 8 3.1494 -0.1532 1.9049 9 7 5.2882 0.2441 1.4698 10 6 5.7000 -0.5860 2.5090 11 6 4.9966 -1.7594 2.7802 12 6 5.3903 -2.5744 3.8003 13 6 6.5172 -2.2339 4.5740 14 6 6.9341 -3.0749 5.6283 15 1 7.4230 -2.6535 6.4941 16 6 6.7141 -4.4543 5.5514 17 7 6.2877 -4.9878 4.4350 18 14 7.0288 -5.5349 7.0423 19 1 6.1612 -5.0952 8.1644 20 1 6.7212 -6.9476 6.7036 21 1 8.4539 -5.4208 7.4443 22 6 7.2225 -1.0470 4.2942 23 6 6.8137 -0.2396 3.2740 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 2.0019 3.0605 1.2491 28 1 0.4723 2.1507 1.2493 29 1 1.8805 1.5236 2.1393 30 1 1.7872 1.4736 -2.1360 31 1 0.4847 2.2427 -1.1978 32 1 2.0830 3.0189 -1.3036 33 1 3.9788 2.1790 0.0499 34 1 3.8602 0.6880 -0.9149 35 1 5.9458 0.7267 0.9448 36 1 4.1353 -2.0211 2.1835 37 1 4.8417 -3.4803 4.0122 38 1 6.1348 -5.9442 4.3818 39 1 8.0847 -0.7772 4.8861 40 1 7.3532 0.6709 3.0586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230934748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = -64.698530 kcal Electronic energy + Delta-G solvation = -21455.630792 eV Core-core repulsion = 18235.206912 eV Total energy + Delta-G solvation = -3220.423880 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95810 -38.45976 -36.99230 -34.33392 -33.30545 -32.80482 -29.57327 -29.28597 -28.11707 -27.41393 -26.46529 -24.63326 -21.55172 -21.08084 -19.94969 -19.30791 -17.26520 -17.11396 -16.23834 -16.12814 -15.26409 -15.07849 -14.95650 -14.64820 -13.91580 -13.67531 -13.36227 -13.02692 -12.80081 -12.48326 -12.33792 -12.13809 -11.96453 -11.86211 -11.70697 -11.54744 -11.34361 -11.23292 -11.05804 -10.93996 -10.61313 -10.52928 -9.82163 -9.55690 -9.44839 -9.26671 -9.00395 -8.70716 -7.46378 -6.85287 -6.61495 -4.26111 2.66666 3.08071 3.11447 3.14590 3.16458 3.47823 3.81545 3.87784 4.00174 4.64178 4.73597 4.87509 4.95435 5.31318 5.35618 5.38671 5.47499 5.48501 5.52106 5.62573 5.72776 5.75910 5.83563 5.95651 6.03170 6.19456 6.43625 6.46044 6.89414 7.07040 7.10771 7.23346 7.36001 7.38653 7.66382 7.76172 8.05042 8.12262 8.29133 8.40568 8.70083 8.91237 8.95982 9.08976 10.31271 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030936 B = 0.003799 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.883815 B = 7368.016002 C = 7931.264532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.128 3.872 4 C -0.185 4.185 5 C -0.178 4.178 6 C -0.128 4.128 7 C 0.499 3.501 8 O -0.507 6.507 9 N -0.660 5.660 10 C 0.006 3.994 11 C -0.089 4.089 12 C -0.145 4.145 13 C 0.104 3.896 14 C -0.463 4.463 15 H 0.075 0.925 16 C 0.072 3.928 17 N -0.803 5.803 18 Si 0.911 3.089 19 H -0.265 1.265 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.210 4.210 23 C -0.112 4.112 24 H 0.081 0.919 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.087 0.913 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.392 0.608 36 H 0.102 0.898 37 H 0.121 0.879 38 H 0.279 0.721 39 H 0.095 0.905 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.672 11.217 -9.892 16.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.276 6.276 3 C 0.088 3.912 4 C -0.242 4.242 5 C -0.235 4.235 6 C -0.168 4.168 7 C 0.285 3.715 8 O -0.382 6.382 9 N -0.303 5.303 10 C -0.086 4.086 11 C -0.109 4.109 12 C -0.165 4.165 13 C 0.101 3.899 14 C -0.493 4.493 15 H 0.094 0.906 16 C -0.144 4.144 17 N -0.430 5.430 18 Si 0.736 3.264 19 H -0.190 1.190 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.230 4.230 23 C -0.132 4.132 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.225 0.775 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.244 10.424 -9.505 15.858 hybrid contribution 0.364 -0.039 0.234 0.434 sum -6.880 10.385 -9.271 15.528 Atomic orbital electron populations 1.22704 0.82246 1.02365 0.99412 1.88116 1.18698 1.26018 1.94756 1.21090 0.91832 0.84161 0.94111 1.22550 1.01272 1.00295 1.00090 1.22443 1.01906 1.00859 0.98310 1.21735 0.94901 1.01475 0.98730 1.20345 0.82556 0.82198 0.86395 1.90701 1.51492 1.46720 1.49268 1.43071 1.06830 1.46572 1.33877 1.17203 1.01660 0.93846 0.95882 1.20460 0.99002 0.92575 0.98854 1.21035 0.97484 1.00212 0.97782 1.17666 0.89478 0.90805 0.91913 1.19478 1.34423 0.91390 1.04031 0.90636 1.25880 0.92985 0.98944 0.96593 1.69802 1.34389 1.13439 1.25323 0.86323 0.79720 0.78460 0.81872 1.18967 1.20406 1.19135 1.20602 1.01964 0.99520 1.00954 1.20045 0.97665 0.98611 0.96858 0.90051 0.93960 0.94619 0.92334 0.92601 0.89409 0.91720 0.92084 0.91502 0.88336 0.88493 0.77524 0.87954 0.86131 0.90968 0.88681 0.89265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.21 101.05 1.03 1.38 16 2 O -0.36 -5.49 8.90 -55.92 -0.50 -5.99 16 3 C 0.13 1.60 0.71 -90.62 -0.06 1.53 16 4 C -0.18 -2.33 7.97 37.16 0.30 -2.03 16 5 C -0.18 -1.61 8.06 37.15 0.30 -1.31 16 6 C -0.13 -1.58 4.97 -27.88 -0.14 -1.72 16 7 C 0.50 8.80 7.03 -10.99 -0.08 8.72 16 8 O -0.51 -11.06 10.94 -15.13 -0.17 -11.23 16 9 N -0.66 -11.76 5.30 -9.74 -0.05 -11.81 16 10 C 0.01 0.15 6.26 -83.58 -0.52 -0.38 16 11 C -0.09 -2.27 8.57 -39.79 -0.34 -2.61 16 12 C -0.15 -3.99 8.59 -39.26 -0.34 -4.33 16 13 C 0.10 2.85 5.54 -106.80 -0.59 2.25 16 14 C -0.46 -12.57 9.04 -37.85 -0.34 -12.91 16 15 H 0.08 1.95 7.86 -52.49 -0.41 1.54 16 16 C 0.07 1.87 5.27 -17.34 -0.09 1.78 16 17 N -0.80 -21.49 10.86 55.55 0.60 -20.89 16 18 Si 0.91 19.25 29.57 -169.99 -5.03 14.22 16 19 H -0.26 -5.55 7.11 56.52 0.40 -5.15 16 20 H -0.28 -5.75 7.11 56.52 0.40 -5.34 16 21 H -0.27 -5.53 7.11 56.52 0.40 -5.12 16 22 C -0.21 -5.20 9.74 -39.26 -0.38 -5.58 16 23 C -0.11 -2.49 9.90 -39.79 -0.39 -2.89 16 24 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 25 H 0.04 0.49 6.42 -51.93 -0.33 0.16 16 26 H 0.04 0.34 6.55 -51.93 -0.34 0.00 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.63 6.54 -51.93 -0.34 0.29 16 29 H 0.09 1.43 5.99 -51.93 -0.31 1.12 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.51 6.87 -51.93 -0.36 0.15 16 32 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.39 5.40 8.82 -40.82 -0.36 5.04 16 36 H 0.10 2.66 6.49 -52.48 -0.34 2.32 16 37 H 0.12 3.45 6.28 -52.49 -0.33 3.12 16 38 H 0.28 6.86 8.30 -40.82 -0.34 6.52 16 39 H 0.10 2.19 8.06 -52.49 -0.42 1.76 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 323.86 15.07 4.88 4.88 Total: -1.00 -31.67 323.86 -7.55 -39.22 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -5.64 Total: 9.69 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: -1.66 Total: -18.09 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.55 Total: -32.70 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.66 Total: -17.22 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.67 -7.55 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230934748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.477 kcal (2) G-P(sol) polarization free energy of solvation -31.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds