Wall clock time and date at job start Mon Mar 30 2020 01:47:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42894 * 114.00366 * 2 1 4 4 C 1.53008 * 109.46984 * 60.00334 * 3 2 1 5 5 C 1.52994 * 109.47298 * 300.00322 * 3 2 1 6 6 C 1.53002 * 109.47491 * 180.02562 * 3 2 1 7 7 C 1.50703 * 109.46996 * 302.81467 * 6 3 2 8 8 O 1.21285 * 119.99895 * 6.19985 * 7 6 3 9 9 N 1.34772 * 120.00342 * 186.19432 * 7 6 3 10 10 C 1.39231 * 120.00292 * 185.01878 * 9 7 6 11 11 C 1.39476 * 119.83718 * 34.79035 * 10 9 7 12 12 C 1.36376 * 120.17612 * 180.29839 * 11 10 9 13 13 C 1.40869 * 119.82044 * 359.48051 * 12 11 10 14 14 C 1.41160 * 120.16338 * 180.24782 * 13 12 11 15 15 H 1.07991 * 120.00345 * 210.44048 * 14 13 12 16 16 C 1.39900 * 119.99570 * 30.44195 * 14 13 12 17 17 N 1.30872 * 120.00345 * 9.13354 * 16 14 13 18 18 Si 1.86802 * 120.00035 * 189.13673 * 16 14 13 19 19 H 1.48497 * 109.47116 * 59.99312 * 18 16 14 20 20 H 1.48495 * 109.47390 * 179.97438 * 18 16 14 21 21 H 1.48512 * 109.46792 * 299.99775 * 18 16 14 22 22 C 1.40873 * 119.67546 * 0.51897 * 13 12 11 23 23 C 1.36375 * 119.82490 * 359.73017 * 22 13 12 24 24 H 1.08997 * 109.47182 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46927 * 299.99737 * 1 2 3 26 26 H 1.08999 * 109.46860 * 59.99859 * 1 2 3 27 27 H 1.08998 * 109.47094 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.46412 * 299.99978 * 4 3 2 29 29 H 1.09004 * 109.46867 * 59.99818 * 4 3 2 30 30 H 1.08995 * 109.47257 * 305.90565 * 5 3 2 31 31 H 1.09002 * 109.47449 * 65.90888 * 5 3 2 32 32 H 1.09010 * 109.47362 * 185.90653 * 5 3 2 33 33 H 1.08999 * 109.47348 * 182.81911 * 6 3 2 34 34 H 1.08994 * 109.47032 * 62.81145 * 6 3 2 35 35 H 0.97001 * 119.99463 * 5.01555 * 9 7 6 36 36 H 1.08006 * 119.91212 * 0.02562 * 11 10 9 37 37 H 1.07997 * 120.09121 * 179.69806 * 12 11 10 38 38 H 0.96999 * 120.00187 * 180.02562 * 17 16 14 39 39 H 1.08001 * 120.08585 * 179.71504 * 22 13 12 40 40 H 1.07997 * 119.90795 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 1.5589 2.0646 1.2494 5 6 1.5588 2.0647 -1.2491 6 6 3.5355 1.1846 -0.0006 7 6 3.9759 0.3771 1.1932 8 8 3.1494 -0.1532 1.9049 9 7 5.2882 0.2441 1.4698 10 6 5.7000 -0.5860 2.5090 11 6 4.9966 -1.7594 2.7802 12 6 5.3903 -2.5744 3.8003 13 6 6.5172 -2.2339 4.5740 14 6 6.9341 -3.0749 5.6283 15 1 7.4230 -2.6535 6.4941 16 6 6.7141 -4.4543 5.5514 17 7 6.2877 -4.9878 4.4350 18 14 7.0288 -5.5349 7.0423 19 1 6.1612 -5.0952 8.1644 20 1 6.7212 -6.9476 6.7036 21 1 8.4539 -5.4208 7.4443 22 6 7.2225 -1.0470 4.2942 23 6 6.8137 -0.2396 3.2740 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8900 27 1 2.0019 3.0605 1.2491 28 1 0.4723 2.1507 1.2493 29 1 1.8805 1.5236 2.1393 30 1 1.7872 1.4736 -2.1360 31 1 0.4847 2.2427 -1.1978 32 1 2.0830 3.0189 -1.3036 33 1 3.9788 2.1790 0.0499 34 1 3.8602 0.6880 -0.9149 35 1 5.9458 0.7267 0.9448 36 1 4.1353 -2.0211 2.1835 37 1 4.8417 -3.4803 4.0122 38 1 6.1348 -5.9442 4.3818 39 1 8.0847 -0.7772 4.8861 40 1 7.3532 0.6709 3.0586 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230934748.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:58 Heat of formation + Delta-G solvation = -84.410844 kcal Electronic energy + Delta-G solvation = -21456.485583 eV Core-core repulsion = 18235.206912 eV Total energy + Delta-G solvation = -3221.278671 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.32233 -39.78947 -38.65697 -36.08920 -34.65873 -34.26572 -31.45931 -31.03277 -29.37320 -28.24720 -27.55419 -26.38958 -23.30753 -22.89959 -21.28957 -20.60859 -19.22235 -18.53272 -17.72586 -17.31304 -16.91569 -16.25818 -16.09599 -15.90609 -15.72198 -15.13799 -14.69603 -14.48173 -14.21848 -13.97672 -13.67752 -13.49689 -13.36429 -13.18712 -12.94315 -12.86621 -12.77778 -12.65728 -12.45444 -12.37242 -12.12224 -11.67930 -11.48914 -11.40110 -11.14541 -10.76557 -10.49087 -10.24374 -9.43791 -8.74821 -8.53033 -6.28652 0.85464 1.14468 1.38108 1.48074 1.50796 1.96877 2.22994 2.46784 2.80704 2.95079 3.70938 3.75161 3.90988 4.08491 4.27933 4.44748 4.46715 4.48547 4.55870 4.61057 4.66761 4.72080 4.75471 4.91404 4.93676 4.99117 5.10239 5.13423 5.22821 5.25529 5.33387 5.45541 5.50806 5.70068 5.89991 6.10671 6.15303 6.37190 6.46539 6.70389 6.86122 6.95536 7.03366 7.58719 8.40734 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030936 B = 0.003799 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 904.883815 B = 7368.016002 C = 7931.264532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.117 3.883 4 C -0.182 4.182 5 C -0.168 4.168 6 C -0.119 4.119 7 C 0.493 3.507 8 O -0.553 6.553 9 N -0.653 5.653 10 C 0.022 3.978 11 C -0.104 4.104 12 C -0.170 4.170 13 C 0.070 3.930 14 C -0.500 4.500 15 H 0.079 0.921 16 C 0.027 3.973 17 N -0.840 5.840 18 Si 0.987 3.013 19 H -0.262 1.262 20 H -0.271 1.271 21 H -0.256 1.256 22 C -0.217 4.217 23 C -0.106 4.106 24 H 0.077 0.923 25 H 0.038 0.962 26 H 0.062 0.938 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.091 0.909 33 H 0.141 0.859 34 H 0.116 0.884 35 H 0.416 0.584 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.284 0.716 39 H 0.111 0.889 40 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.998 13.641 -11.262 18.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C 0.078 3.922 4 C -0.239 4.239 5 C -0.226 4.226 6 C -0.159 4.159 7 C 0.281 3.719 8 O -0.431 6.431 9 N -0.299 5.299 10 C -0.072 4.072 11 C -0.124 4.124 12 C -0.190 4.190 13 C 0.068 3.932 14 C -0.530 4.530 15 H 0.097 0.903 16 C -0.185 4.185 17 N -0.467 5.467 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.195 1.195 21 H -0.180 1.180 22 C -0.237 4.237 23 C -0.126 4.126 24 H 0.096 0.904 25 H 0.057 0.943 26 H 0.081 0.919 27 H 0.101 0.899 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.110 0.890 33 H 0.159 0.841 34 H 0.134 0.866 35 H 0.253 0.747 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.095 0.905 39 H 0.129 0.871 40 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.559 12.894 -10.918 18.124 hybrid contribution 0.081 -0.657 0.550 0.861 sum -6.477 12.236 -10.368 17.297 Atomic orbital electron populations 1.22802 0.81102 1.02608 1.00494 1.88062 1.20273 1.28248 1.95045 1.21382 0.91787 0.83494 0.95563 1.22501 1.01993 1.00903 0.98488 1.22359 1.02617 1.01396 0.96191 1.21868 0.95136 1.02718 0.96163 1.21427 0.81693 0.81601 0.87146 1.90704 1.52694 1.48518 1.51140 1.43043 1.07954 1.45957 1.32991 1.17288 1.00593 0.92950 0.96333 1.20447 0.99246 0.94005 0.98722 1.20899 0.98375 1.00219 0.99548 1.17991 0.90042 0.92473 0.92733 1.19770 1.36111 0.92550 1.04586 0.90297 1.26802 0.92219 0.99972 0.99552 1.69898 1.35395 1.13985 1.27430 0.85188 0.79959 0.76510 0.77609 1.18665 1.19500 1.17978 1.20894 1.02154 0.98885 1.01762 1.20427 0.97284 0.99564 0.95356 0.90430 0.94312 0.91943 0.89912 0.91837 0.93755 0.91355 0.91433 0.89014 0.84088 0.86581 0.74652 0.89392 0.88789 0.90531 0.87118 0.84627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.61 10.21 113.37 1.16 1.77 16 2 O -0.40 -11.97 8.90 -129.20 -1.15 -13.12 16 3 C 0.12 2.64 0.71 -10.79 -0.01 2.64 16 4 C -0.18 -4.28 7.97 71.98 0.57 -3.71 16 5 C -0.17 -2.37 8.06 71.98 0.58 -1.79 16 6 C -0.12 -2.54 4.97 29.85 0.15 -2.39 16 7 C 0.49 16.74 7.03 87.66 0.62 17.35 16 8 O -0.55 -24.67 10.94 16.74 0.18 -24.49 16 9 N -0.65 -21.91 5.30 -303.12 -1.61 -23.51 16 10 C 0.02 0.99 6.26 38.56 0.24 1.23 16 11 C -0.10 -5.53 8.57 22.13 0.19 -5.34 16 12 C -0.17 -9.90 8.59 22.48 0.19 -9.71 16 13 C 0.07 3.97 5.54 -21.27 -0.12 3.85 16 14 C -0.50 -28.11 9.04 23.39 0.21 -27.90 16 15 H 0.08 4.20 7.86 -2.92 -0.02 4.17 16 16 C 0.03 1.44 5.27 85.24 0.45 1.89 16 17 N -0.84 -47.03 10.86 21.82 0.24 -46.79 16 18 Si 0.99 40.26 29.57 68.60 2.03 42.29 16 19 H -0.26 -10.47 7.11 99.48 0.71 -9.77 16 20 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 21 H -0.26 -9.90 7.11 99.48 0.71 -9.20 16 22 C -0.22 -10.68 9.74 22.48 0.22 -10.47 16 23 C -0.11 -4.55 9.90 22.13 0.22 -4.33 16 24 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.04 0.90 6.42 -2.38 -0.02 0.88 16 26 H 0.06 1.08 6.55 -2.39 -0.02 1.06 16 27 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 28 H 0.06 1.35 6.54 -2.39 -0.02 1.33 16 29 H 0.04 1.45 5.99 -2.38 -0.01 1.43 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.07 0.88 6.87 -2.39 -0.02 0.86 16 32 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.42 9.89 8.82 -92.71 -0.82 9.08 16 36 H 0.09 4.84 6.49 -2.91 -0.02 4.82 16 37 H 0.09 5.83 6.28 -2.91 -0.02 5.81 16 38 H 0.28 14.54 8.30 -92.71 -0.77 13.77 16 39 H 0.11 4.99 8.06 -2.91 -0.02 4.97 16 40 H 0.14 4.53 8.06 -2.91 -0.02 4.50 16 Total: -1.00 -74.37 323.86 4.60 -69.77 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.23 Total: 32.77 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 4.67 Total: -36.91 kcal Atomic # 7 Polarization: -68.93 SS G_CDS: -1.37 Total: -70.31 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -0.97 Total: -37.61 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.29 kcal Total: -74.37 4.60 -69.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230934748.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.644 kcal (2) G-P(sol) polarization free energy of solvation -74.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds