Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47026 * 2 1 4 4 C 1.52999 * 109.47158 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47298 * 299.99621 * 3 2 1 6 6 C 1.42895 * 114.00334 * 300.00284 * 5 3 2 7 7 C 1.50709 * 109.47212 * 59.99647 * 3 2 1 8 8 O 1.21279 * 119.99994 * 240.00030 * 7 3 2 9 9 N 1.34780 * 119.99514 * 59.99854 * 7 3 2 10 10 C 1.39238 * 119.99500 * 184.29938 * 9 7 3 11 11 C 1.39475 * 119.83743 * 324.48839 * 10 9 7 12 12 C 1.36378 * 120.17228 * 179.71573 * 11 10 9 13 13 C 1.40872 * 119.82492 * 0.55309 * 12 11 10 14 14 C 1.41150 * 120.16511 * 179.69646 * 13 12 11 15 15 H 1.07998 * 120.00351 * 214.80221 * 14 13 12 16 16 C 1.39904 * 119.99704 * 34.80774 * 14 13 12 17 17 N 1.30871 * 120.00457 * 355.55414 * 16 14 13 18 18 Si 1.86807 * 119.99738 * 175.56408 * 16 14 13 19 19 H 1.48497 * 109.47280 * 59.99812 * 18 16 14 20 20 H 1.48500 * 109.46937 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46710 * 299.99409 * 18 16 14 22 22 C 1.40870 * 119.67230 * 359.71869 * 13 12 11 23 23 C 1.36374 * 119.82779 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47523 * 299.99824 * 1 2 3 25 25 H 1.09003 * 109.47173 * 60.00397 * 1 2 3 26 26 H 1.09007 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47058 * 239.99916 * 2 1 3 28 28 H 1.09003 * 109.46725 * 119.99894 * 2 1 3 29 29 H 1.09003 * 109.47394 * 299.99819 * 4 3 2 30 30 H 1.09000 * 109.47170 * 60.00311 * 4 3 2 31 31 H 1.09007 * 109.47100 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47409 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47138 * 299.99992 * 6 5 3 34 34 H 1.09003 * 109.46815 * 59.99703 * 6 5 3 35 35 H 0.96998 * 120.00474 * 4.30907 * 9 7 3 36 36 H 1.08003 * 119.91688 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.09274 * 180.26929 * 12 11 10 38 38 H 0.96991 * 120.00710 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.08642 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.91695 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 1.5637 2.1161 -1.1668 6 6 1.9854 1.5198 -2.3950 7 6 1.5375 2.1529 1.2305 8 8 0.8403 3.1390 1.1191 9 7 1.8631 1.6924 2.4546 10 6 1.3269 2.2941 3.5900 11 6 1.1106 3.6719 3.6087 12 6 0.5803 4.2675 4.7151 13 6 0.2617 3.4890 5.8451 14 6 -0.2814 4.0990 6.9963 15 1 -0.0261 3.7254 7.9769 16 6 -1.1507 5.1876 6.8670 17 7 -1.3921 5.6955 5.6853 18 14 -1.9666 5.9162 8.3813 19 1 -0.9236 6.3996 9.3214 20 1 -2.8337 7.0523 7.9780 21 1 -2.7906 4.8763 9.0482 22 6 0.4884 2.0989 5.8207 23 6 1.0144 1.5168 4.7052 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9330 0.9288 0.8909 30 1 3.9337 0.9286 -0.8891 31 1 3.9333 2.4702 0.0011 32 1 1.5823 2.0891 -3.2325 33 1 3.0742 1.5214 -2.4447 34 1 1.6209 0.4937 -2.4447 35 1 2.4710 0.9420 2.5447 36 1 1.3598 4.2680 2.7433 37 1 0.4094 5.3338 4.7266 38 1 -1.9945 6.4504 5.5957 39 1 0.2470 1.4958 6.6835 40 1 1.1891 0.4513 4.6851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000234001361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = -61.848405 kcal Electronic energy + Delta-G solvation = -21748.489667 eV Core-core repulsion = 18528.189377 eV Total energy + Delta-G solvation = -3220.300290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.37034 -38.32963 -36.89839 -34.50199 -33.65265 -32.58751 -30.39987 -29.48030 -28.77434 -27.27216 -25.15689 -23.90332 -22.51293 -21.26508 -20.66493 -19.12362 -17.67344 -17.25389 -16.29816 -15.81953 -15.68547 -15.16782 -14.90215 -14.57652 -13.92735 -13.47072 -13.39403 -13.33277 -12.95753 -12.64892 -12.54512 -12.35365 -12.03661 -11.95372 -11.70723 -11.44290 -11.38247 -11.13194 -11.11039 -10.97630 -10.86535 -10.46862 -9.88137 -9.85211 -9.64846 -9.33852 -8.93367 -8.67586 -7.49645 -6.86698 -6.56241 -4.30705 2.60223 3.03511 3.11753 3.12590 3.14631 3.17810 3.41754 4.00959 4.08226 4.48780 4.73201 4.82209 4.88111 5.08610 5.16321 5.22590 5.27693 5.41688 5.48998 5.57157 5.69022 5.71373 5.83316 5.94874 6.00420 6.14954 6.33200 6.40925 6.81168 6.96428 7.06226 7.10396 7.24196 7.32252 7.66364 7.71198 8.00155 8.11685 8.22594 8.36385 8.69769 8.79844 8.96084 9.04279 10.34583 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003948 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.192516 B = 7091.366069 C = 7341.667259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.099 3.901 4 C -0.178 4.178 5 O -0.350 6.350 6 C 0.023 3.977 7 C 0.515 3.485 8 O -0.504 6.504 9 N -0.650 5.650 10 C 0.007 3.993 11 C -0.094 4.094 12 C -0.144 4.144 13 C 0.101 3.899 14 C -0.464 4.464 15 H 0.075 0.925 16 C 0.070 3.930 17 N -0.807 5.807 18 Si 0.915 3.085 19 H -0.266 1.266 20 H -0.279 1.279 21 H -0.267 1.267 22 C -0.204 4.204 23 C -0.113 4.113 24 H 0.061 0.939 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.074 0.926 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.044 0.956 35 H 0.392 0.608 36 H 0.107 0.893 37 H 0.131 0.869 38 H 0.279 0.721 39 H 0.096 0.904 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.541 -10.090 -10.747 16.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.056 3.944 4 C -0.235 4.235 5 O -0.268 6.268 6 C -0.074 4.074 7 C 0.300 3.700 8 O -0.378 6.378 9 N -0.295 5.295 10 C -0.085 4.085 11 C -0.114 4.114 12 C -0.164 4.164 13 C 0.098 3.902 14 C -0.495 4.495 15 H 0.093 0.907 16 C -0.146 4.146 17 N -0.434 5.434 18 Si 0.740 3.260 19 H -0.191 1.191 20 H -0.204 1.204 21 H -0.191 1.191 22 C -0.224 4.224 23 C -0.133 4.133 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.075 0.925 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.106 0.894 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.226 0.774 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.090 0.910 39 H 0.115 0.885 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 6.757 -9.007 -10.965 15.717 hybrid contribution -0.017 -0.398 0.523 0.658 sum 6.740 -9.405 -10.442 15.586 Atomic orbital electron populations 1.21725 0.94310 1.01548 1.03390 1.22119 0.98077 0.94849 1.03133 1.21447 0.93862 0.92204 0.86914 1.22417 0.94088 1.03839 1.03191 1.88123 1.73833 1.52595 1.12215 1.22854 0.99216 0.98545 0.86775 1.19810 0.81273 0.85287 0.83661 1.90734 1.36364 1.24809 1.85872 1.42867 1.47075 1.35135 1.04396 1.17250 1.11967 0.92241 0.87059 1.20655 1.00270 0.92272 0.98175 1.21311 1.00742 1.00865 0.93450 1.17718 0.88607 0.90450 0.93418 1.19448 1.24140 1.11951 0.93962 0.90686 1.25888 0.96202 0.95429 0.97079 1.69774 1.29789 1.20271 1.23566 0.86262 0.79442 0.78737 0.81543 1.19083 1.20423 1.19149 1.20679 1.09111 0.94990 0.97624 1.20057 1.02412 0.96612 0.94227 0.91948 0.91935 0.92540 0.90768 0.90502 0.90870 0.91179 0.90938 0.89449 0.93806 0.93741 0.77387 0.87521 0.85155 0.90994 0.88548 0.89178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.52 37.16 0.35 -1.61 16 2 C -0.14 -1.58 4.52 -26.73 -0.12 -1.70 16 3 C 0.10 1.36 0.67 -91.77 -0.06 1.29 16 4 C -0.18 -1.86 8.14 37.16 0.30 -1.56 16 5 O -0.35 -5.27 9.21 -55.14 -0.51 -5.77 16 6 C 0.02 0.22 10.21 101.05 1.03 1.26 16 7 C 0.52 9.57 5.12 -10.98 -0.06 9.52 16 8 O -0.50 -12.03 13.93 -14.35 -0.20 -12.23 16 9 N -0.65 -11.51 5.08 -9.74 -0.05 -11.56 16 10 C 0.01 0.15 6.30 -83.57 -0.53 -0.38 16 11 C -0.09 -2.38 8.61 -39.79 -0.34 -2.72 16 12 C -0.14 -3.92 8.62 -39.26 -0.34 -4.25 16 13 C 0.10 2.72 5.55 -106.80 -0.59 2.13 16 14 C -0.46 -12.50 9.02 -37.85 -0.34 -12.84 16 15 H 0.07 1.91 7.85 -52.49 -0.41 1.50 16 16 C 0.07 1.80 5.42 -17.34 -0.09 1.71 16 17 N -0.81 -21.86 10.60 55.55 0.59 -21.27 16 18 Si 0.92 19.31 29.56 -169.99 -5.03 14.29 16 19 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 20 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 C -0.20 -4.94 9.74 -39.26 -0.38 -5.33 16 23 C -0.11 -2.46 9.90 -39.79 -0.39 -2.86 16 24 H 0.06 1.01 7.22 -51.93 -0.37 0.63 16 25 H 0.06 0.83 7.68 -51.93 -0.40 0.43 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.07 0.64 6.54 -51.93 -0.34 0.30 16 28 H 0.08 0.74 7.67 -51.93 -0.40 0.34 16 29 H 0.07 0.65 7.47 -51.93 -0.39 0.26 16 30 H 0.07 0.56 6.55 -51.93 -0.34 0.22 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.04 0.36 6.42 -51.93 -0.33 0.03 16 34 H 0.04 0.37 6.42 -51.93 -0.33 0.04 16 35 H 0.39 5.34 7.67 -40.82 -0.31 5.03 16 36 H 0.11 2.76 6.24 -52.48 -0.33 2.43 16 37 H 0.13 3.72 6.13 -52.49 -0.32 3.40 16 38 H 0.28 6.97 8.30 -40.82 -0.34 6.63 16 39 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 40 H 0.09 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 323.73 15.07 4.88 4.88 Total: -1.00 -32.08 323.73 -7.41 -39.49 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: -5.53 Total: 9.53 kcal Atomic # 6 Polarization: -15.79 SS G_CDS: -1.56 Total: -17.35 kcal Atomic # 7 Polarization: -33.37 SS G_CDS: 0.54 Total: -32.83 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.71 Total: -18.01 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.29 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -32.08 -7.41 -39.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234001361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.359 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds