Wall clock time and date at job start Mon Mar 30 2020 01:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47026 * 2 1 4 4 C 1.52999 * 109.47158 * 179.97438 * 3 2 1 5 5 O 1.42898 * 109.47298 * 299.99621 * 3 2 1 6 6 C 1.42895 * 114.00334 * 300.00284 * 5 3 2 7 7 C 1.50709 * 109.47212 * 59.99647 * 3 2 1 8 8 O 1.21279 * 119.99994 * 240.00030 * 7 3 2 9 9 N 1.34780 * 119.99514 * 59.99854 * 7 3 2 10 10 C 1.39238 * 119.99500 * 184.29938 * 9 7 3 11 11 C 1.39475 * 119.83743 * 324.48839 * 10 9 7 12 12 C 1.36378 * 120.17228 * 179.71573 * 11 10 9 13 13 C 1.40872 * 119.82492 * 0.55309 * 12 11 10 14 14 C 1.41150 * 120.16511 * 179.69646 * 13 12 11 15 15 H 1.07998 * 120.00351 * 214.80221 * 14 13 12 16 16 C 1.39904 * 119.99704 * 34.80774 * 14 13 12 17 17 N 1.30871 * 120.00457 * 355.55414 * 16 14 13 18 18 Si 1.86807 * 119.99738 * 175.56408 * 16 14 13 19 19 H 1.48497 * 109.47280 * 59.99812 * 18 16 14 20 20 H 1.48500 * 109.46937 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.46710 * 299.99409 * 18 16 14 22 22 C 1.40870 * 119.67230 * 359.71869 * 13 12 11 23 23 C 1.36374 * 119.82779 * 0.02562 * 22 13 12 24 24 H 1.09000 * 109.47523 * 299.99824 * 1 2 3 25 25 H 1.09003 * 109.47173 * 60.00397 * 1 2 3 26 26 H 1.09007 * 109.46968 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47058 * 239.99916 * 2 1 3 28 28 H 1.09003 * 109.46725 * 119.99894 * 2 1 3 29 29 H 1.09003 * 109.47394 * 299.99819 * 4 3 2 30 30 H 1.09000 * 109.47170 * 60.00311 * 4 3 2 31 31 H 1.09007 * 109.47100 * 180.02562 * 4 3 2 32 32 H 1.08997 * 109.47409 * 179.97438 * 6 5 3 33 33 H 1.09000 * 109.47138 * 299.99992 * 6 5 3 34 34 H 1.09003 * 109.46815 * 59.99703 * 6 5 3 35 35 H 0.96998 * 120.00474 * 4.30907 * 9 7 3 36 36 H 1.08003 * 119.91688 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.09274 * 180.26929 * 12 11 10 38 38 H 0.96991 * 120.00710 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.08642 * 179.97438 * 22 13 12 40 40 H 1.07998 * 119.91695 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4425 0.0006 5 8 1.5637 2.1161 -1.1668 6 6 1.9854 1.5198 -2.3950 7 6 1.5375 2.1529 1.2305 8 8 0.8403 3.1390 1.1191 9 7 1.8631 1.6924 2.4546 10 6 1.3269 2.2941 3.5900 11 6 1.1106 3.6719 3.6087 12 6 0.5803 4.2675 4.7151 13 6 0.2617 3.4890 5.8451 14 6 -0.2814 4.0990 6.9963 15 1 -0.0261 3.7254 7.9769 16 6 -1.1507 5.1876 6.8670 17 7 -1.3921 5.6955 5.6853 18 14 -1.9666 5.9162 8.3813 19 1 -0.9236 6.3996 9.3214 20 1 -2.8337 7.0523 7.9780 21 1 -2.7906 4.8763 9.0482 22 6 0.4884 2.0989 5.8207 23 6 1.0144 1.5168 4.7052 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.9330 0.9288 0.8909 30 1 3.9337 0.9286 -0.8891 31 1 3.9333 2.4702 0.0011 32 1 1.5823 2.0891 -3.2325 33 1 3.0742 1.5214 -2.4447 34 1 1.6209 0.4937 -2.4447 35 1 2.4710 0.9420 2.5447 36 1 1.3598 4.2680 2.7433 37 1 0.4094 5.3338 4.7266 38 1 -1.9945 6.4504 5.5957 39 1 0.2470 1.4958 6.6835 40 1 1.1891 0.4513 4.6851 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000234001361.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:48:01 Heat of formation + Delta-G solvation = -82.361943 kcal Electronic energy + Delta-G solvation = -21749.379200 eV Core-core repulsion = 18528.189377 eV Total energy + Delta-G solvation = -3221.189823 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73378 -39.77894 -38.54654 -36.22648 -35.07996 -34.07457 -31.54106 -31.35104 -30.52556 -28.11071 -26.93320 -24.96338 -23.89443 -23.12575 -22.30627 -20.54387 -19.25268 -19.01868 -17.66965 -17.22428 -17.00372 -16.61954 -16.06767 -15.93062 -15.72732 -15.02402 -14.66056 -14.33935 -14.32084 -14.16945 -13.96244 -13.63341 -13.57666 -13.33861 -13.08829 -12.89041 -12.83095 -12.69281 -12.32246 -12.27611 -12.08885 -11.85355 -11.75596 -11.67170 -11.14710 -10.68233 -10.55542 -10.38534 -9.45725 -8.76149 -8.49348 -6.33381 0.80107 1.12659 1.38587 1.45725 1.51869 1.74392 1.99757 2.23895 2.81487 3.04666 3.54146 3.65259 3.72459 3.86832 4.23610 4.34700 4.43604 4.46607 4.48971 4.51902 4.62634 4.71005 4.78283 4.90497 4.96708 4.98730 5.04563 5.11922 5.15661 5.16545 5.32380 5.33799 5.41710 5.70591 5.84780 6.07209 6.13719 6.18599 6.35701 6.70330 6.71331 6.95674 7.02033 7.38509 8.43349 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034723 B = 0.003948 C = 0.003813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.192516 B = 7091.366069 C = 7341.667259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.139 4.139 3 C 0.104 3.896 4 C -0.175 4.175 5 O -0.393 6.393 6 C 0.016 3.984 7 C 0.509 3.491 8 O -0.568 6.568 9 N -0.636 5.636 10 C 0.021 3.979 11 C -0.111 4.111 12 C -0.169 4.169 13 C 0.067 3.933 14 C -0.498 4.498 15 H 0.082 0.918 16 C 0.022 3.978 17 N -0.849 5.849 18 Si 0.991 3.009 19 H -0.256 1.256 20 H -0.274 1.274 21 H -0.258 1.258 22 C -0.208 4.208 23 C -0.104 4.104 24 H 0.020 0.980 25 H 0.050 0.950 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.053 0.947 32 H 0.091 0.909 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.418 0.582 36 H 0.090 0.910 37 H 0.103 0.897 38 H 0.282 0.718 39 H 0.115 0.885 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.884 -13.416 -11.165 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.176 4.176 3 C 0.062 3.938 4 C -0.232 4.232 5 O -0.312 6.312 6 C -0.080 4.080 7 C 0.297 3.703 8 O -0.445 6.445 9 N -0.283 5.283 10 C -0.072 4.072 11 C -0.131 4.131 12 C -0.190 4.190 13 C 0.064 3.936 14 C -0.528 4.528 15 H 0.100 0.900 16 C -0.189 4.189 17 N -0.477 5.477 18 Si 0.812 3.188 19 H -0.181 1.181 20 H -0.199 1.199 21 H -0.182 1.182 22 C -0.228 4.228 23 C -0.124 4.124 24 H 0.039 0.961 25 H 0.069 0.931 26 H 0.100 0.900 27 H 0.130 0.870 28 H 0.117 0.883 29 H 0.113 0.887 30 H 0.122 0.878 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.256 0.744 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.153 -12.393 -11.400 18.709 hybrid contribution -0.374 0.553 0.470 0.816 sum 7.779 -11.840 -10.930 17.893 Atomic orbital electron populations 1.21716 0.96181 1.02314 1.00756 1.22191 0.96299 0.93091 1.06038 1.21465 0.95712 0.92533 0.84137 1.22451 0.91194 1.03574 1.05974 1.88072 1.74923 1.54288 1.13944 1.23113 1.00664 0.99418 0.84770 1.20952 0.79782 0.84406 0.85194 1.90711 1.39157 1.27793 1.86857 1.42737 1.47115 1.35374 1.03104 1.17327 1.10021 0.91175 0.88705 1.20645 1.01206 0.94126 0.97095 1.21165 1.02889 0.99965 0.94950 1.18056 0.89796 0.92097 0.93604 1.19769 1.25396 1.13404 0.94257 0.90004 1.26874 0.96370 0.95403 1.00283 1.69914 1.30760 1.21016 1.25984 0.85112 0.78438 0.77939 0.77299 1.18057 1.19921 1.18243 1.20972 1.08626 0.94013 0.99171 1.20442 1.00456 0.98861 0.92654 0.96099 0.93115 0.89987 0.87049 0.88293 0.88746 0.87758 0.92793 0.89046 0.91718 0.91788 0.74387 0.89151 0.87905 0.90788 0.86673 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.63 9.52 71.98 0.69 -2.94 16 2 C -0.14 -2.49 4.52 30.59 0.14 -2.35 16 3 C 0.10 2.62 0.67 -11.54 -0.01 2.61 16 4 C -0.17 -3.02 8.14 71.98 0.59 -2.44 16 5 O -0.39 -11.40 9.21 -129.94 -1.20 -12.60 16 6 C 0.02 0.27 10.21 113.37 1.16 1.43 16 7 C 0.51 18.80 5.12 87.66 0.45 19.25 16 8 O -0.57 -28.37 13.93 16.01 0.22 -28.15 16 9 N -0.64 -21.55 5.08 -303.10 -1.54 -23.09 16 10 C 0.02 0.93 6.30 38.56 0.24 1.18 16 11 C -0.11 -5.90 8.61 22.13 0.19 -5.71 16 12 C -0.17 -9.83 8.62 22.48 0.19 -9.64 16 13 C 0.07 3.74 5.55 -21.28 -0.12 3.62 16 14 C -0.50 -27.67 9.02 23.39 0.21 -27.45 16 15 H 0.08 4.26 7.85 -2.91 -0.02 4.23 16 16 C 0.02 1.17 5.42 85.24 0.46 1.63 16 17 N -0.85 -48.55 10.60 21.82 0.23 -48.32 16 18 Si 0.99 40.40 29.56 68.60 2.03 42.43 16 19 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 20 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 C -0.21 -9.98 9.74 22.48 0.22 -9.76 16 23 C -0.10 -4.34 9.90 22.14 0.22 -4.12 16 24 H 0.02 0.65 7.22 -2.39 -0.02 0.63 16 25 H 0.05 1.30 7.68 -2.39 -0.02 1.28 16 26 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 27 H 0.11 1.25 6.54 -2.39 -0.02 1.24 16 28 H 0.10 1.36 7.67 -2.39 -0.02 1.35 16 29 H 0.09 1.22 7.47 -2.39 -0.02 1.20 16 30 H 0.10 1.12 6.55 -2.39 -0.02 1.11 16 31 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 32 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 33 H 0.06 0.81 6.42 -2.39 -0.02 0.79 16 34 H 0.06 0.82 6.42 -2.39 -0.02 0.80 16 35 H 0.42 9.83 7.67 -92.71 -0.71 9.12 16 36 H 0.09 5.04 6.24 -2.91 -0.02 5.02 16 37 H 0.10 6.41 6.13 -2.91 -0.02 6.40 16 38 H 0.28 14.85 8.30 -92.71 -0.77 14.08 16 39 H 0.12 5.00 8.06 -2.91 -0.02 4.98 16 40 H 0.14 4.43 8.06 -2.91 -0.02 4.40 16 Total: -1.00 -77.22 323.73 4.72 -72.51 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: 0.34 Total: 31.91 kcal Atomic # 6 Polarization: -39.31 SS G_CDS: 4.63 Total: -34.68 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.31 Total: -71.42 kcal Atomic # 8 Polarization: -39.78 SS G_CDS: -0.97 Total: -40.75 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Total: -77.22 4.72 -72.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000234001361.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.855 kcal (2) G-P(sol) polarization free energy of solvation -77.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds