Wall clock time and date at job start Mon Mar 30 2020 02:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47432 * 239.99953 * 2 1 3 5 5 O 1.45207 * 109.47169 * 119.99999 * 2 1 3 6 6 C 1.34626 * 116.99943 * 60.00033 * 5 2 1 7 7 O 1.21508 * 120.00198 * 359.97438 * 6 5 2 8 8 N 1.34782 * 120.00134 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00212 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47151 * 180.02562 * 9 8 6 11 11 C 1.38632 * 119.75213 * 269.72575 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.47621 * 300.00021 * 1 2 3 25 25 H 1.08998 * 109.47456 * 60.00174 * 1 2 3 26 26 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47114 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47150 * 299.99535 * 3 2 1 29 29 H 1.08999 * 109.47344 * 60.00000 * 3 2 1 30 30 H 1.08998 * 109.46688 * 300.00197 * 4 2 1 31 31 H 1.08998 * 109.46784 * 60.00077 * 4 2 1 32 32 H 1.09003 * 109.47049 * 180.02562 * 4 2 1 33 33 H 0.96998 * 119.99697 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46977 * 60.00213 * 9 8 6 35 35 H 1.09001 * 109.47430 * 300.00116 * 9 8 6 36 36 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 38 38 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0672 -2.6654 2.4172 9 6 1.6731 -4.0665 2.5837 10 6 2.2632 -4.6059 3.8611 11 6 3.5132 -5.2052 3.8422 12 6 4.0643 -5.6961 5.0037 13 6 3.3488 -5.5987 6.2115 14 6 3.9021 -6.1057 7.4099 15 1 3.5851 -5.7068 8.3621 16 6 4.8607 -7.1242 7.3621 17 7 4.9967 -7.8440 6.2782 18 14 5.9460 -7.4558 8.8459 19 1 5.3441 -8.5364 9.6677 20 1 7.2952 -7.8748 8.3886 21 1 6.0613 -6.2199 9.6609 22 6 2.0785 -4.9937 6.2178 23 6 1.5498 -4.5038 5.0455 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 2.6261 -2.2363 3.0838 34 1 2.0396 -4.6498 1.7391 35 1 0.5862 -4.1354 2.6286 36 1 4.0583 -5.2834 2.9131 37 1 5.0402 -6.1584 4.9876 38 1 5.6609 -8.5503 6.2452 39 1 1.5204 -4.9140 7.1390 40 1 0.5751 -4.0386 5.0479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000238176174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:20 Heat of formation + Delta-G solvation = -80.299309 kcal Electronic energy + Delta-G solvation = -20865.634790 eV Core-core repulsion = 17644.534409 eV Total energy + Delta-G solvation = -3221.100381 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.51579 -38.01182 -36.97569 -34.72778 -34.02000 -33.29678 -30.31001 -29.37913 -27.48330 -27.41905 -26.96368 -23.98267 -21.92794 -21.09772 -20.17837 -19.76539 -17.96484 -17.41205 -16.47664 -15.99735 -15.44138 -14.94606 -14.62875 -14.47292 -14.04426 -13.83668 -13.63722 -13.28363 -12.61736 -12.55473 -12.51990 -12.08073 -12.04255 -11.93642 -11.90109 -11.62558 -11.39822 -11.32503 -11.17205 -11.10214 -10.65274 -10.55878 -10.29909 -9.88198 -9.72930 -9.51161 -9.24659 -8.73076 -7.59468 -7.48380 -6.89156 -4.48669 2.26594 2.76733 2.97038 3.01124 3.04840 3.13456 3.14377 3.83965 4.38667 4.64178 4.67498 4.70993 4.85800 5.36764 5.45119 5.53761 5.57563 5.59784 5.67916 5.80361 5.81194 5.87070 5.89412 6.17804 6.23048 6.24988 6.30304 6.33033 6.63037 6.83021 6.85059 6.95658 7.16150 7.24214 7.49196 7.67403 7.89034 7.93575 7.99054 8.17245 8.51574 8.69779 8.76470 8.84294 10.04882 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040565 B = 0.003003 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.089025 B = 9321.196450 C = 9382.246169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.135 3.865 3 C -0.140 4.140 4 C -0.183 4.183 5 O -0.369 6.369 6 C 0.642 3.358 7 O -0.580 6.580 8 N -0.699 5.699 9 C 0.202 3.798 10 C -0.249 4.249 11 C -0.078 4.078 12 C -0.170 4.170 13 C 0.118 3.882 14 C -0.457 4.457 15 H 0.080 0.920 16 C 0.075 3.925 17 N -0.786 5.786 18 Si 0.909 3.091 19 H -0.269 1.269 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.230 4.230 23 C -0.066 4.066 24 H 0.058 0.942 25 H 0.066 0.934 26 H 0.089 0.911 27 H 0.065 0.935 28 H 0.077 0.923 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.405 0.595 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.118 0.882 38 H 0.283 0.717 39 H 0.093 0.907 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.716 11.579 -8.621 14.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.098 3.902 3 C -0.197 4.197 4 C -0.240 4.240 5 O -0.284 6.284 6 C 0.395 3.605 7 O -0.470 6.470 8 N -0.357 5.357 9 C 0.082 3.918 10 C -0.251 4.251 11 C -0.097 4.097 12 C -0.189 4.189 13 C 0.115 3.885 14 C -0.486 4.486 15 H 0.098 0.902 16 C -0.144 4.144 17 N -0.410 5.410 18 Si 0.733 3.267 19 H -0.195 1.195 20 H -0.199 1.199 21 H -0.183 1.183 22 C -0.250 4.250 23 C -0.085 4.085 24 H 0.077 0.923 25 H 0.085 0.915 26 H 0.107 0.893 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.107 0.893 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.240 0.760 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.136 0.864 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.945 11.149 -9.184 14.741 hybrid contribution 0.720 -0.127 0.873 1.139 sum -2.225 11.022 -8.310 13.982 Atomic orbital electron populations 1.22506 0.94229 1.05128 1.02115 1.21974 0.94243 0.91431 0.82522 1.21849 1.02204 0.92826 1.02854 1.22509 1.01485 1.03646 0.96353 1.86315 1.71774 1.24305 1.46032 1.18309 0.79190 0.80189 0.82797 1.90848 1.41896 1.70498 1.43801 1.45535 1.54486 1.13166 1.22541 1.19949 0.98278 0.77379 0.96217 1.18931 0.99006 1.13932 0.93216 1.20563 0.94303 0.97781 0.97056 1.21305 1.00800 1.04618 0.92220 1.17680 0.89629 0.88023 0.93137 1.19672 1.18739 1.16033 0.94150 0.90221 1.25966 0.96355 0.94586 0.97447 1.69821 1.28594 1.14287 1.28309 0.86285 0.79323 0.79644 0.81459 1.19460 1.19928 1.18316 1.20967 0.97074 1.10453 0.96461 1.20418 0.97297 0.98143 0.92674 0.92305 0.91481 0.89262 0.91548 0.90417 0.91561 0.89262 0.91480 0.92283 0.76003 0.92099 0.92184 0.89308 0.86386 0.90638 0.88831 0.89294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.11 8.37 37.15 0.31 -1.80 16 2 C 0.14 1.63 1.13 -90.62 -0.10 1.52 16 3 C -0.14 -1.25 8.85 37.16 0.33 -0.92 16 4 C -0.18 -2.13 8.37 37.16 0.31 -1.82 16 5 O -0.37 -5.49 9.94 -40.29 -0.40 -5.89 16 6 C 0.64 10.75 8.06 54.06 0.44 11.19 16 7 O -0.58 -10.63 11.88 -19.28 -0.23 -10.86 16 8 N -0.70 -11.61 5.55 -66.47 -0.37 -11.98 16 9 C 0.20 3.63 5.79 -5.20 -0.03 3.60 16 10 C -0.25 -5.11 5.27 -104.33 -0.55 -5.66 16 11 C -0.08 -1.72 9.67 -39.66 -0.38 -2.11 16 12 C -0.17 -4.21 8.70 -38.87 -0.34 -4.55 16 13 C 0.12 3.01 5.57 -106.83 -0.60 2.42 16 14 C -0.46 -11.64 9.05 -37.74 -0.34 -11.98 16 15 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 16 C 0.08 1.82 5.14 -17.34 -0.09 1.73 16 17 N -0.79 -19.57 10.97 55.55 0.61 -18.96 16 18 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 19 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.27 -5.30 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.23 -5.38 9.80 -38.88 -0.38 -5.76 16 23 C -0.07 -1.41 9.67 -39.66 -0.38 -1.79 16 24 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 27 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.09 1.27 5.88 -51.93 -0.31 0.97 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.41 6.38 8.57 -40.82 -0.35 6.03 16 34 H 0.06 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 36 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 37 H 0.12 3.03 6.18 -52.49 -0.32 2.71 16 38 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 39 H 0.09 2.07 8.06 -52.48 -0.42 1.65 16 40 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 332.73 15.07 5.01 5.01 Total: -1.00 -26.89 332.73 -8.11 -35.00 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -5.90 Total: 10.71 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -1.81 Total: -15.92 kcal Atomic # 7 Polarization: -31.17 SS G_CDS: 0.24 Total: -30.93 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.63 Total: -16.75 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.89 -8.11 -35.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238176174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.296 kcal (2) G-P(sol) polarization free energy of solvation -26.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds