Wall clock time and date at job start Mon Mar 30 2020 02:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 C 1.53002 * 109.47152 * 2 1 4 4 C 1.53005 * 109.47432 * 239.99953 * 2 1 3 5 5 O 1.45207 * 109.47169 * 119.99999 * 2 1 3 6 6 C 1.34626 * 116.99943 * 60.00033 * 5 2 1 7 7 O 1.21508 * 120.00198 * 359.97438 * 6 5 2 8 8 N 1.34782 * 120.00134 * 180.02562 * 6 5 2 9 9 C 1.46498 * 120.00212 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47151 * 180.02562 * 9 8 6 11 11 C 1.38632 * 119.75213 * 269.72575 * 10 9 8 12 12 C 1.37614 * 120.25123 * 179.71891 * 11 10 9 13 13 C 1.40719 * 119.74124 * 0.57305 * 12 11 10 14 14 C 1.41395 * 120.24246 * 179.67718 * 13 12 11 15 15 H 1.07998 * 119.99970 * 155.30784 * 14 13 12 16 16 C 1.39951 * 120.00207 * 335.31835 * 14 13 12 17 17 N 1.30818 * 119.99753 * 342.22830 * 16 14 13 18 18 Si 1.86797 * 120.00021 * 162.22875 * 16 14 13 19 19 H 1.48500 * 109.47048 * 94.66426 * 18 16 14 20 20 H 1.48498 * 109.47252 * 214.66382 * 18 16 14 21 21 H 1.48496 * 109.47461 * 334.66371 * 18 16 14 22 22 C 1.40704 * 119.51466 * 359.70404 * 13 12 11 23 23 C 1.37620 * 119.74516 * 359.97438 * 22 13 12 24 24 H 1.09006 * 109.47621 * 300.00021 * 1 2 3 25 25 H 1.08998 * 109.47456 * 60.00174 * 1 2 3 26 26 H 1.08998 * 109.47345 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47114 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47150 * 299.99535 * 3 2 1 29 29 H 1.08999 * 109.47344 * 60.00000 * 3 2 1 30 30 H 1.08998 * 109.46688 * 300.00197 * 4 2 1 31 31 H 1.08998 * 109.46784 * 60.00077 * 4 2 1 32 32 H 1.09003 * 109.47049 * 180.02562 * 4 2 1 33 33 H 0.96998 * 119.99697 * 0.02562 * 8 6 5 34 34 H 1.08998 * 109.46977 * 60.00213 * 9 8 6 35 35 H 1.09001 * 109.47430 * 300.00116 * 9 8 6 36 36 H 1.08005 * 119.87401 * 359.97438 * 11 10 9 37 37 H 1.07997 * 120.13194 * 180.28480 * 12 11 10 38 38 H 0.97004 * 119.99893 * 180.02562 * 17 16 14 39 39 H 1.08007 * 120.13445 * 179.97438 * 22 13 12 40 40 H 1.08000 * 119.87742 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0139 -0.6845 1.1856 6 6 1.6522 -1.9722 1.3384 7 8 0.9508 -2.5094 0.5041 8 7 2.0672 -2.6654 2.4172 9 6 1.6731 -4.0665 2.5837 10 6 2.2632 -4.6059 3.8611 11 6 3.5132 -5.2052 3.8422 12 6 4.0643 -5.6961 5.0037 13 6 3.3488 -5.5987 6.2115 14 6 3.9021 -6.1057 7.4099 15 1 3.5851 -5.7068 8.3621 16 6 4.8607 -7.1242 7.3621 17 7 4.9967 -7.8440 6.2782 18 14 5.9460 -7.4558 8.8459 19 1 5.3441 -8.5364 9.6677 20 1 7.2952 -7.8748 8.3886 21 1 6.0613 -6.2199 9.6609 22 6 2.0785 -4.9937 6.2178 23 6 1.5498 -4.5038 5.0455 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6766 -1.7489 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7216 -1.2490 33 1 2.6261 -2.2363 3.0838 34 1 2.0396 -4.6498 1.7391 35 1 0.5862 -4.1354 2.6286 36 1 4.0583 -5.2834 2.9131 37 1 5.0402 -6.1584 4.9876 38 1 5.6609 -8.5503 6.2452 39 1 1.5204 -4.9140 7.1390 40 1 0.5751 -4.0386 5.0479 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238176174.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:19 Heat of formation + Delta-G solvation = -94.907150 kcal Electronic energy + Delta-G solvation = -20866.268234 eV Core-core repulsion = 17644.534409 eV Total energy + Delta-G solvation = -3221.733824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.73118 -39.67344 -38.27684 -36.27928 -35.33697 -34.68003 -32.02019 -31.17784 -28.63966 -28.32241 -28.25447 -25.63365 -23.20257 -22.89354 -21.83074 -20.98557 -19.25296 -19.19550 -17.62319 -17.28865 -17.13381 -16.34026 -15.89820 -15.72257 -15.65647 -15.23532 -15.10454 -14.38717 -14.24715 -13.92446 -13.81915 -13.36650 -13.30893 -13.05302 -12.94199 -12.85778 -12.82300 -12.74663 -12.46853 -12.35697 -12.28409 -12.14107 -11.49790 -11.34576 -11.30271 -11.11742 -11.00475 -10.11443 -9.40736 -9.30510 -8.67898 -6.37841 0.73567 1.13420 1.32811 1.39495 1.52536 1.60292 1.82647 2.19752 2.68817 3.33817 3.74403 3.80224 3.84419 3.99250 4.12387 4.29868 4.51224 4.56270 4.64833 4.65286 4.69088 4.79902 4.84265 4.89651 4.91338 5.04155 5.12062 5.14078 5.29554 5.32516 5.34590 5.41950 5.42659 5.63041 5.67930 5.90064 6.08024 6.18704 6.35244 6.53166 6.67072 6.90885 6.99691 7.40602 8.28827 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040565 B = 0.003003 C = 0.002984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 690.089025 B = 9321.196450 C = 9382.246169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.121 3.879 3 C -0.135 4.135 4 C -0.179 4.179 5 O -0.373 6.373 6 C 0.644 3.356 7 O -0.596 6.596 8 N -0.698 5.698 9 C 0.213 3.787 10 C -0.232 4.232 11 C -0.080 4.080 12 C -0.193 4.193 13 C 0.088 3.912 14 C -0.495 4.495 15 H 0.078 0.922 16 C 0.036 3.964 17 N -0.820 5.820 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.266 1.266 21 H -0.258 1.258 22 C -0.244 4.244 23 C -0.065 4.065 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.059 0.941 33 H 0.410 0.590 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.290 0.710 39 H 0.099 0.901 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 13.223 -9.426 16.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.084 3.916 3 C -0.192 4.192 4 C -0.236 4.236 5 O -0.287 6.287 6 C 0.397 3.603 7 O -0.488 6.488 8 N -0.356 5.356 9 C 0.092 3.908 10 C -0.233 4.233 11 C -0.098 4.098 12 C -0.212 4.212 13 C 0.085 3.915 14 C -0.524 4.524 15 H 0.096 0.904 16 C -0.180 4.180 17 N -0.445 5.445 18 Si 0.802 3.198 19 H -0.188 1.188 20 H -0.191 1.191 21 H -0.182 1.182 22 C -0.263 4.263 23 C -0.083 4.083 24 H 0.079 0.921 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.123 0.877 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.112 0.888 32 H 0.078 0.922 33 H 0.246 0.754 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.100 0.900 39 H 0.117 0.883 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.235 12.818 -10.000 16.576 hybrid contribution 0.696 -0.523 0.948 1.287 sum -2.539 12.294 -9.053 15.477 Atomic orbital electron populations 1.22463 0.93916 1.03625 1.03585 1.22453 0.94744 0.92795 0.81559 1.21882 1.02339 0.90595 1.04357 1.22470 1.01508 1.02212 0.97455 1.86329 1.71738 1.23130 1.47552 1.18296 0.78837 0.80794 0.82329 1.90856 1.42573 1.71095 1.44309 1.45262 1.54725 1.12696 1.22956 1.19743 0.98383 0.78074 0.94628 1.19148 0.97955 1.12072 0.94157 1.20767 0.95017 0.97195 0.96862 1.21259 1.00603 1.06123 0.93227 1.18017 0.90747 0.89086 0.93648 1.19912 1.20807 1.17509 0.94205 0.90419 1.26781 0.97042 0.93796 1.00381 1.69869 1.29438 1.14936 1.30249 0.85200 0.77475 0.79440 0.77684 1.18752 1.19064 1.18173 1.21161 0.96693 1.10769 0.97714 1.20702 0.98324 0.97335 0.91973 0.92071 0.88813 0.92129 0.91391 0.87671 0.91297 0.92159 0.88787 0.92188 0.75438 0.92059 0.91530 0.87663 0.88133 0.89973 0.88264 0.86486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.76 8.37 71.98 0.60 -3.16 16 2 C 0.12 2.63 1.13 -10.80 -0.01 2.62 16 3 C -0.13 -1.99 8.85 71.98 0.64 -1.35 16 4 C -0.18 -3.83 8.37 71.98 0.60 -3.23 16 5 O -0.37 -10.51 9.94 -55.35 -0.55 -11.06 16 6 C 0.64 20.76 8.06 129.79 1.05 21.80 16 7 O -0.60 -21.37 11.88 19.82 0.24 -21.13 16 8 N -0.70 -22.12 5.55 -594.63 -3.30 -25.42 16 9 C 0.21 7.29 5.79 85.63 0.50 7.78 16 10 C -0.23 -9.23 5.27 -19.67 -0.10 -9.34 16 11 C -0.08 -3.51 9.67 22.22 0.21 -3.29 16 12 C -0.19 -9.79 8.70 22.73 0.20 -9.60 16 13 C 0.09 4.59 5.57 -21.29 -0.12 4.47 16 14 C -0.50 -26.03 9.05 23.46 0.21 -25.82 16 15 H 0.08 3.93 7.91 -2.91 -0.02 3.91 16 16 C 0.04 1.76 5.14 85.26 0.44 2.20 16 17 N -0.82 -41.94 10.97 21.83 0.24 -41.70 16 18 Si 0.98 37.16 29.59 68.60 2.03 39.19 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.27 -9.61 7.11 99.48 0.71 -8.91 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 22 C -0.24 -11.48 9.80 22.73 0.22 -11.26 16 23 C -0.06 -2.66 9.67 22.22 0.21 -2.45 16 24 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 27 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.66 5.88 -2.39 -0.01 1.65 16 31 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.41 12.30 8.57 -92.71 -0.79 11.51 16 34 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 35 H 0.07 2.23 8.08 -2.39 -0.02 2.21 16 36 H 0.11 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.10 5.39 6.18 -2.91 -0.02 5.37 16 38 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 39 H 0.10 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 Total: -1.00 -59.05 332.73 3.55 -55.51 By element: Atomic # 1 Polarization: 34.98 SS G_CDS: 0.24 Total: 35.22 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 4.65 Total: -30.60 kcal Atomic # 7 Polarization: -64.06 SS G_CDS: -3.06 Total: -67.12 kcal Atomic # 8 Polarization: -31.88 SS G_CDS: -0.31 Total: -32.19 kcal Atomic # 14 Polarization: 37.16 SS G_CDS: 2.03 Total: 39.19 kcal Total: -59.05 3.55 -55.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238176174.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.398 kcal (2) G-P(sol) polarization free energy of solvation -59.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds