Wall clock time and date at job start Mon Mar 30 2020 02:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47176 * 120.00605 * 2 1 3 5 5 O 1.42903 * 109.46972 * 299.99578 * 4 2 1 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 N 1.46504 * 109.46628 * 240.00534 * 2 1 3 14 14 C 1.34774 * 120.00128 * 60.00152 * 13 2 1 15 15 O 1.21681 * 120.00410 * 359.97438 * 14 13 2 16 16 C 1.46383 * 119.99690 * 179.97438 * 14 13 2 17 17 H 1.08001 * 120.00147 * 0.02562 * 16 14 13 18 18 C 1.40043 * 119.99939 * 179.97438 * 16 14 13 19 19 N 1.30678 * 119.99845 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00241 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46957 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47267 * 120.00073 * 20 18 16 23 23 H 1.48502 * 109.47031 * 240.00057 * 20 18 16 24 24 H 1.09000 * 109.46969 * 299.99808 * 1 2 3 25 25 H 1.09005 * 109.47251 * 59.99362 * 1 2 3 26 26 H 1.08993 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47805 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47412 * 300.00539 * 3 2 1 29 29 H 1.09000 * 109.46876 * 60.00135 * 3 2 1 30 30 H 1.09005 * 109.47112 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47202 * 59.99750 * 4 2 1 32 32 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 33 33 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 39 39 H 0.97001 * 119.99666 * 240.00043 * 13 2 1 40 40 H 0.97005 * 119.99601 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.5637 -0.0477 2.4160 6 6 1.9859 -0.6438 3.6441 7 6 1.4296 0.1440 4.8022 8 6 0.1969 -0.1858 5.3338 9 6 -0.3132 0.5365 6.3964 10 6 0.4097 1.5882 6.9277 11 6 1.6399 1.9214 6.3926 12 6 2.1521 1.1961 5.3330 13 7 2.0182 -0.6905 -1.1963 14 6 1.6926 -0.2300 -2.4203 15 8 0.9927 0.7591 -2.5319 16 6 2.1810 -0.9197 -3.6156 17 1 2.8018 -1.7978 -3.5166 18 6 1.8422 -0.4414 -4.8875 19 7 1.0897 0.6202 -5.0073 20 14 2.4647 -1.3219 -6.4128 21 1 3.2907 -2.4880 -6.0087 22 1 1.3097 -1.7890 -7.2208 23 1 3.2892 -0.3883 -7.2214 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7489 1.2491 32 1 3.0748 -0.6419 3.6937 33 1 1.6217 -1.6700 3.6941 34 1 -0.3677 -1.0078 4.9190 35 1 -1.2764 0.2791 6.8115 36 1 0.0113 2.1522 7.7581 37 1 2.2028 2.7458 6.8048 38 1 3.1155 1.4533 4.9181 39 1 2.5759 -1.4792 -1.1074 40 1 0.8554 0.9517 -5.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000253397338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:56 Heat of formation + Delta-G solvation = -64.890158 kcal Electronic energy + Delta-G solvation = -21018.142609 eV Core-core repulsion = 17797.710419 eV Total energy + Delta-G solvation = -3220.432190 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.52555 -38.54597 -37.09974 -34.47626 -32.39844 -31.90632 -31.05255 -30.15992 -26.66400 -26.40622 -26.03627 -25.23835 -22.73221 -21.44895 -20.71250 -18.38596 -17.36044 -17.05505 -16.28244 -15.99197 -15.58101 -15.25528 -14.75238 -14.62571 -13.86417 -13.72279 -13.58049 -13.21517 -12.83340 -12.77865 -12.43895 -12.39170 -12.03120 -11.53652 -11.41489 -11.17246 -11.09318 -11.08418 -10.86054 -10.78000 -10.45029 -10.27289 -10.20666 -10.03292 -9.49657 -9.06673 -8.97999 -8.83191 -7.46099 -7.43920 -6.15001 -4.61289 1.11890 1.25537 3.13893 3.22110 3.26162 3.42964 3.96475 4.16530 4.61619 4.66844 4.69486 4.84523 4.95806 5.06401 5.12387 5.26633 5.33568 5.35202 5.47352 5.50571 5.61710 5.81393 5.83857 5.88773 5.98293 6.22461 6.28617 6.33831 6.46312 6.55407 6.59755 6.67845 6.77509 6.82665 7.25393 7.26084 7.28483 7.46135 7.94134 8.17318 8.36179 9.05338 9.58453 10.63157 10.83141 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049084 B = 0.003013 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.313112 B = 9289.541320 C = 9374.143541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.189 3.811 3 C -0.152 4.152 4 C 0.064 3.936 5 O -0.369 6.369 6 C 0.101 3.899 7 C -0.085 4.085 8 C -0.098 4.098 9 C -0.125 4.125 10 C -0.118 4.118 11 C -0.125 4.125 12 C -0.098 4.098 13 N -0.760 5.760 14 C 0.561 3.439 15 O -0.571 6.571 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.088 3.912 19 N -0.767 5.767 20 Si 0.906 3.094 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.277 1.277 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.120 0.880 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.377 0.623 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -2.324 20.330 20.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.101 3.899 3 C -0.210 4.210 4 C -0.013 4.013 5 O -0.288 6.288 6 C 0.024 3.976 7 C -0.085 4.085 8 C -0.116 4.116 9 C -0.143 4.143 10 C -0.136 4.136 11 C -0.143 4.143 12 C -0.116 4.116 13 N -0.417 5.417 14 C 0.365 3.635 15 O -0.453 6.453 16 C -0.583 4.583 17 H 0.084 0.916 18 C -0.131 4.131 19 N -0.396 5.396 20 Si 0.731 3.269 21 H -0.189 1.189 22 H -0.202 1.202 23 H -0.202 1.202 24 H 0.070 0.930 25 H 0.102 0.898 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.102 0.898 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.140 0.860 38 H 0.141 0.859 39 H 0.208 0.792 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.912 -1.284 20.120 20.181 hybrid contribution 0.797 -1.127 -0.652 1.526 sum 1.709 -2.411 19.468 19.691 Atomic orbital electron populations 1.22116 0.95033 1.00964 1.02872 1.19730 0.94235 0.92373 0.83526 1.22115 0.99575 0.96422 1.02870 1.22738 0.97634 0.95445 0.85491 1.87972 1.74560 1.53849 1.12401 1.21282 0.97968 0.95188 0.83155 1.19655 0.95379 0.97240 0.96249 1.21098 0.94748 0.99844 0.95960 1.21145 0.99929 0.96251 0.96958 1.21179 0.95063 0.97397 0.99970 1.21145 0.96307 0.99852 0.96972 1.21097 1.00084 0.94473 0.95996 1.46213 1.57791 1.32732 1.04929 1.18093 0.80140 0.84166 0.81056 1.90532 1.41200 1.28018 1.85567 1.20920 1.34029 1.13727 0.89613 0.91566 1.25682 0.93398 0.94128 0.99939 1.70030 1.27036 1.18626 1.23891 0.86351 0.79066 0.79977 0.81541 1.18872 1.20227 1.20230 0.93027 0.89823 0.94120 0.94120 0.89826 0.93026 0.93306 0.93309 0.92636 0.92631 0.85894 0.85998 0.86154 0.85996 0.85897 0.79213 0.92237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 8.26 37.16 0.31 -2.82 16 2 C 0.19 3.74 0.89 -131.82 -0.12 3.62 16 3 C -0.15 -3.13 8.26 37.16 0.31 -2.82 16 4 C 0.06 1.00 4.92 37.16 0.18 1.18 16 5 O -0.37 -5.62 8.98 -35.23 -0.32 -5.94 16 6 C 0.10 1.18 6.06 36.01 0.22 1.40 16 7 C -0.09 -0.99 5.51 -104.62 -0.58 -1.57 16 8 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 9 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 10 C -0.12 -1.08 10.05 -39.58 -0.40 -1.48 16 11 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 12 C -0.10 -1.07 9.70 -39.58 -0.38 -1.45 16 13 N -0.76 -16.92 5.10 -49.00 -0.25 -17.17 16 14 C 0.56 15.61 7.17 -12.98 -0.09 15.52 16 15 O -0.57 -17.69 11.22 5.21 0.06 -17.63 16 16 C -0.55 -15.27 9.54 -35.63 -0.34 -15.61 16 17 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 18 C 0.09 2.44 5.50 -17.37 -0.10 2.35 16 19 N -0.77 -22.81 11.83 55.55 0.66 -22.15 16 20 Si 0.91 20.12 29.56 -169.99 -5.02 15.10 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 22 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 23 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 24 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 25 H 0.08 2.05 6.16 -51.93 -0.32 1.73 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.08 2.05 6.16 -51.93 -0.32 1.73 16 29 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 33 H 0.06 0.58 8.09 -51.93 -0.42 0.16 16 34 H 0.12 1.19 8.06 -52.48 -0.42 0.76 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.38 7.36 8.45 -40.82 -0.35 7.02 16 40 H 0.27 7.22 8.29 -40.82 -0.34 6.88 16 LS Contribution 334.96 15.07 5.05 5.05 Total: -1.00 -33.37 334.96 -7.97 -41.34 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.97 Total: 7.72 kcal Atomic # 6 Polarization: -4.15 SS G_CDS: -2.17 Total: -6.31 kcal Atomic # 7 Polarization: -39.73 SS G_CDS: 0.41 Total: -39.32 kcal Atomic # 8 Polarization: -23.31 SS G_CDS: -0.26 Total: -23.57 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.37 -7.97 -41.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253397338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.551 kcal (2) G-P(sol) polarization free energy of solvation -33.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds