Wall clock time and date at job start Mon Mar 30 2020 02:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 C 1.52995 * 109.47176 * 120.00605 * 2 1 3 5 5 O 1.42903 * 109.46972 * 299.99578 * 4 2 1 6 6 C 1.42893 * 113.99793 * 180.02562 * 5 4 2 7 7 C 1.50707 * 109.47070 * 179.97438 * 6 5 4 8 8 C 1.38238 * 119.99792 * 89.99993 * 7 6 5 9 9 C 1.38235 * 119.99712 * 179.97438 * 8 7 6 10 10 C 1.38234 * 120.00220 * 359.97124 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00179 * 269.97930 * 7 6 5 13 13 N 1.46504 * 109.46628 * 240.00534 * 2 1 3 14 14 C 1.34774 * 120.00128 * 60.00152 * 13 2 1 15 15 O 1.21681 * 120.00410 * 359.97438 * 14 13 2 16 16 C 1.46383 * 119.99690 * 179.97438 * 14 13 2 17 17 H 1.08001 * 120.00147 * 0.02562 * 16 14 13 18 18 C 1.40043 * 119.99939 * 179.97438 * 16 14 13 19 19 N 1.30678 * 119.99845 * 359.97438 * 18 16 14 20 20 Si 1.86795 * 120.00241 * 180.02562 * 18 16 14 21 21 H 1.48502 * 109.46957 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47267 * 120.00073 * 20 18 16 23 23 H 1.48502 * 109.47031 * 240.00057 * 20 18 16 24 24 H 1.09000 * 109.46969 * 299.99808 * 1 2 3 25 25 H 1.09005 * 109.47251 * 59.99362 * 1 2 3 26 26 H 1.08993 * 109.47259 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47805 * 180.02562 * 3 2 1 28 28 H 1.09005 * 109.47412 * 300.00539 * 3 2 1 29 29 H 1.09000 * 109.46876 * 60.00135 * 3 2 1 30 30 H 1.09005 * 109.47112 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47202 * 59.99750 * 4 2 1 32 32 H 1.09005 * 109.47744 * 60.00256 * 6 5 4 33 33 H 1.09000 * 109.47353 * 299.99456 * 6 5 4 34 34 H 1.08005 * 120.00068 * 359.97438 * 8 7 6 35 35 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 36 36 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 37 37 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 38 38 H 1.07999 * 119.99968 * 359.97438 * 12 7 6 39 39 H 0.97001 * 119.99666 * 240.00043 * 13 2 1 40 40 H 0.97005 * 119.99601 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 8 1.5637 -0.0477 2.4160 6 6 1.9859 -0.6438 3.6441 7 6 1.4296 0.1440 4.8022 8 6 0.1969 -0.1858 5.3338 9 6 -0.3132 0.5365 6.3964 10 6 0.4097 1.5882 6.9277 11 6 1.6399 1.9214 6.3926 12 6 2.1521 1.1961 5.3330 13 7 2.0182 -0.6905 -1.1963 14 6 1.6926 -0.2300 -2.4203 15 8 0.9927 0.7591 -2.5319 16 6 2.1810 -0.9197 -3.6156 17 1 2.8018 -1.7978 -3.5166 18 6 1.8422 -0.4414 -4.8875 19 7 1.0897 0.6202 -5.0073 20 14 2.4647 -1.3219 -6.4128 21 1 3.2907 -2.4880 -6.0087 22 1 1.3097 -1.7890 -7.2208 23 1 3.2892 -0.3883 -7.2214 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 3.1301 -0.7217 1.2489 31 1 1.6767 -1.7489 1.2491 32 1 3.0748 -0.6419 3.6937 33 1 1.6217 -1.6700 3.6941 34 1 -0.3677 -1.0078 4.9190 35 1 -1.2764 0.2791 6.8115 36 1 0.0113 2.1522 7.7581 37 1 2.2028 2.7458 6.8048 38 1 3.1155 1.4533 4.9181 39 1 2.5759 -1.4792 -1.1074 40 1 0.8554 0.9517 -5.8883 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253397338.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:55 Heat of formation + Delta-G solvation = -86.617935 kcal Electronic energy + Delta-G solvation = -21019.084796 eV Core-core repulsion = 17797.710419 eV Total energy + Delta-G solvation = -3221.374377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.49923 -40.00703 -38.53100 -36.23281 -34.47412 -32.91533 -31.93151 -31.77755 -28.12472 -28.11011 -27.78788 -26.35361 -23.46523 -22.59787 -22.22493 -20.16276 -19.27513 -17.94630 -17.50662 -17.28246 -16.98165 -16.52829 -15.97941 -15.71874 -15.65839 -14.95101 -14.88029 -14.43461 -14.29137 -14.08928 -14.06455 -13.62792 -13.26859 -13.06433 -12.96938 -12.78912 -12.67703 -12.54628 -12.49764 -12.00756 -11.95989 -11.86988 -11.85044 -11.60441 -10.90205 -10.57696 -9.81001 -9.75633 -9.58961 -9.40305 -8.22879 -6.79600 0.34881 0.51223 1.41262 1.41520 1.58651 2.23801 2.47009 2.53721 2.98799 3.44398 3.67276 3.79542 3.93242 4.06056 4.08886 4.17170 4.24611 4.30875 4.36753 4.41993 4.51992 4.67265 4.67766 4.78596 4.88308 4.92729 5.01567 5.06333 5.09130 5.16872 5.35715 5.49574 5.50873 5.56066 5.61824 5.68924 5.93222 6.10582 6.19367 6.30427 6.38753 6.92514 7.64082 8.57528 8.75372 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.049084 B = 0.003013 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.313112 B = 9289.541320 C = 9374.143541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.181 3.819 3 C -0.141 4.141 4 C 0.078 3.922 5 O -0.389 6.389 6 C 0.099 3.901 7 C -0.106 4.106 8 C -0.114 4.114 9 C -0.132 4.132 10 C -0.122 4.122 11 C -0.132 4.132 12 C -0.114 4.114 13 N -0.748 5.748 14 C 0.547 3.453 15 O -0.612 6.612 16 C -0.574 4.574 17 H 0.084 0.916 18 C 0.030 3.970 19 N -0.821 5.821 20 Si 0.994 3.006 21 H -0.248 1.248 22 H -0.271 1.271 23 H -0.271 1.271 24 H 0.066 0.934 25 H 0.037 0.963 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.129 0.871 35 H 0.142 0.858 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.129 0.871 39 H 0.392 0.608 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.711 -3.824 21.580 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.095 3.905 3 C -0.200 4.200 4 C 0.001 3.999 5 O -0.308 6.308 6 C 0.023 3.977 7 C -0.107 4.107 8 C -0.132 4.132 9 C -0.150 4.150 10 C -0.139 4.139 11 C -0.150 4.150 12 C -0.132 4.132 13 N -0.404 5.404 14 C 0.351 3.649 15 O -0.498 6.498 16 C -0.611 4.611 17 H 0.103 0.897 18 C -0.185 4.185 19 N -0.451 5.451 20 Si 0.814 3.186 21 H -0.171 1.171 22 H -0.196 1.196 23 H -0.196 1.196 24 H 0.084 0.916 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.147 0.853 35 H 0.160 0.840 36 H 0.163 0.837 37 H 0.160 0.840 38 H 0.147 0.853 39 H 0.226 0.774 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.998 -2.818 21.424 21.701 hybrid contribution 0.426 -0.602 -0.887 1.153 sum 2.424 -3.420 20.538 20.961 Atomic orbital electron populations 1.21970 0.95889 1.00913 1.01197 1.19871 0.93665 0.92285 0.84716 1.21970 0.99913 0.96888 1.01195 1.22449 0.98413 0.95267 0.83764 1.87930 1.75052 1.54590 1.13224 1.21459 0.98919 0.95742 0.81598 1.19793 0.96109 0.98052 0.96702 1.21315 0.94800 1.00460 0.96616 1.21464 1.00816 0.96126 0.96599 1.21545 0.94813 0.97232 1.00351 1.21465 0.96740 1.00188 0.96614 1.21314 1.00556 0.94671 0.96650 1.45862 1.57174 1.32941 1.04428 1.18404 0.79856 0.83830 0.82853 1.90517 1.42852 1.29713 1.86678 1.21458 1.34630 1.14546 0.90453 0.89738 1.26894 0.93034 0.94676 1.03907 1.70197 1.28819 1.20826 1.25226 0.85021 0.78590 0.78842 0.76125 1.17075 1.19577 1.19582 0.91555 0.94429 0.93294 0.93292 0.94432 0.91554 0.91560 0.91565 0.91244 0.91237 0.85322 0.84025 0.83746 0.84026 0.85323 0.77402 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.90 8.26 71.98 0.59 -5.31 16 2 C 0.18 7.12 0.89 3.60 0.00 7.12 16 3 C -0.14 -5.90 8.26 71.98 0.59 -5.31 16 4 C 0.08 2.26 4.92 71.98 0.35 2.61 16 5 O -0.39 -11.07 8.98 -148.98 -1.34 -12.41 16 6 C 0.10 2.11 6.06 71.24 0.43 2.55 16 7 C -0.11 -2.33 5.51 -19.86 -0.11 -2.44 16 8 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 9 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 10 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 11 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 12 C -0.11 -2.31 9.70 22.27 0.22 -2.09 16 13 N -0.75 -33.20 5.10 -427.16 -2.18 -35.38 16 14 C 0.55 31.15 7.17 86.36 0.62 31.77 16 15 O -0.61 -39.76 11.22 -4.29 -0.05 -39.80 16 16 C -0.57 -32.31 9.54 24.83 0.24 -32.07 16 17 H 0.08 4.28 7.85 -2.91 -0.02 4.25 16 18 C 0.03 1.66 5.50 85.30 0.47 2.13 16 19 N -0.82 -50.28 11.83 21.83 0.26 -50.02 16 20 Si 0.99 41.16 29.56 68.60 2.03 43.19 16 21 H -0.25 -9.47 7.11 99.48 0.71 -8.76 16 22 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 24 H 0.07 2.52 7.68 -2.39 -0.02 2.50 16 25 H 0.04 1.91 6.16 -2.38 -0.01 1.90 16 26 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 28 H 0.04 1.91 6.16 -2.38 -0.01 1.89 16 29 H 0.07 2.52 7.68 -2.39 -0.02 2.50 16 30 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.28 8.08 -2.38 -0.02 1.26 16 33 H 0.07 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 35 H 0.14 1.78 8.06 -2.91 -0.02 1.75 16 36 H 0.14 1.55 8.06 -2.91 -0.02 1.52 16 37 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 38 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 39 H 0.39 14.81 8.45 -92.71 -0.78 14.03 16 40 H 0.27 15.15 8.29 -92.70 -0.77 14.38 16 Total: -1.00 -75.03 334.96 3.26 -71.76 By element: Atomic # 1 Polarization: 31.43 SS G_CDS: 0.25 Total: 31.67 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: 4.30 Total: -9.01 kcal Atomic # 7 Polarization: -83.48 SS G_CDS: -1.92 Total: -85.40 kcal Atomic # 8 Polarization: -50.83 SS G_CDS: -1.39 Total: -52.21 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -75.03 3.26 -71.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253397338.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.855 kcal (2) G-P(sol) polarization free energy of solvation -75.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds