Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00234 * 2 1 4 4 C 1.38748 * 120.05533 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94994 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.04761 * 359.97396 * 5 4 3 7 7 C 1.38240 * 120.11815 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05487 * 0.28178 * 7 6 5 9 9 C 1.50699 * 120.03049 * 179.74341 * 8 7 6 10 10 C 1.52996 * 109.47299 * 119.99552 * 9 8 7 11 11 C 1.52996 * 109.46784 * 239.99676 * 9 8 7 12 12 C 1.52999 * 109.46868 * 359.97438 * 9 8 7 13 13 N 1.46505 * 109.46948 * 180.02562 * 12 9 8 14 14 C 1.34774 * 120.00167 * 180.02562 * 13 12 9 15 15 O 1.21691 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.46366 * 120.00226 * 179.97438 * 14 13 12 17 17 H 1.07999 * 119.99897 * 353.93744 * 16 14 13 18 18 C 1.40053 * 120.00144 * 173.93760 * 16 14 13 19 19 N 1.30661 * 119.99837 * 6.14459 * 18 16 14 20 20 Si 1.86806 * 119.99883 * 186.15166 * 18 16 14 21 21 H 1.48495 * 109.47056 * 94.98076 * 20 18 16 22 22 H 1.48493 * 109.46863 * 214.98133 * 20 18 16 23 23 H 1.48499 * 109.46947 * 334.98071 * 20 18 16 24 24 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47303 * 300.00066 * 1 2 3 26 26 H 1.09004 * 109.47128 * 60.00140 * 1 2 3 27 27 H 1.08005 * 120.02913 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.97889 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.93891 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.97484 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47256 * 59.99828 * 10 9 8 32 32 H 1.09000 * 109.47400 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46984 * 299.99833 * 10 9 8 34 34 H 1.09002 * 109.47628 * 59.99366 * 11 9 8 35 35 H 1.09000 * 109.47467 * 179.97438 * 11 9 8 36 36 H 1.09007 * 109.46925 * 299.99781 * 11 9 8 37 37 H 1.08997 * 109.47490 * 300.00369 * 12 9 8 38 38 H 1.09002 * 109.47204 * 60.00296 * 12 9 8 39 39 H 0.97003 * 119.99619 * 359.97438 * 13 12 9 40 40 H 0.97001 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 -0.0011 8 6 3.4312 1.2847 -0.0069 9 6 4.2538 0.0221 -0.0133 10 6 3.9283 -0.8050 1.2319 11 6 3.9274 -0.7928 -1.2665 12 6 5.7408 0.3822 -0.0126 13 7 6.5405 -0.8453 -0.0195 14 6 7.8863 -0.7728 -0.0196 15 8 8.4371 0.3122 -0.0145 16 6 8.6852 -1.9992 -0.0259 17 1 8.2007 -2.9598 0.0684 18 6 10.0780 -1.9269 -0.1541 19 7 10.6753 -0.7648 -0.1473 20 14 11.0817 -3.4920 -0.3350 21 1 11.3180 -3.7648 -1.7754 22 1 12.3848 -3.3272 0.3578 23 1 10.3403 -4.6281 0.2689 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 0.0005 28 1 1.3341 4.5114 0.0008 29 1 3.7922 4.6380 -0.0005 30 1 5.1344 2.5752 -0.0019 31 1 2.8689 -1.0615 1.2311 32 1 4.5229 -1.7185 1.2271 33 1 4.1608 -0.2245 2.1247 34 1 4.1592 -0.2035 -2.1537 35 1 4.5226 -1.7059 -1.2715 36 1 2.8679 -1.0493 -1.2673 37 1 5.9724 0.9713 -0.8999 38 1 5.9735 0.9629 0.8800 39 1 6.1013 -1.7102 -0.0232 40 1 11.6399 -0.7147 -0.2365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258719457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = -58.999535 kcal Electronic energy + Delta-G solvation = -21711.081206 eV Core-core repulsion = 18490.904452 eV Total energy + Delta-G solvation = -3220.176753 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.55260 -38.05301 -37.14350 -35.77759 -32.59287 -31.74685 -30.31577 -29.50926 -27.53426 -26.88254 -26.79375 -24.91627 -22.78670 -21.79208 -19.89135 -18.85320 -17.98778 -17.20259 -16.13638 -15.82189 -15.60920 -15.15064 -14.49701 -14.34343 -14.22059 -14.09948 -13.53592 -13.16359 -13.05542 -12.94178 -12.38457 -12.26228 -12.00666 -11.77357 -11.71613 -11.36157 -11.27135 -11.06769 -11.02659 -10.91805 -10.54328 -10.41930 -10.37363 -10.17126 -10.01053 -8.79713 -8.79121 -8.08898 -7.53919 -7.38235 -6.13569 -4.57016 1.37673 1.48685 3.17520 3.22951 3.24537 3.28133 3.80726 4.15391 4.62706 4.66210 4.77494 4.93141 4.98880 5.03707 5.08860 5.26901 5.34985 5.37342 5.39734 5.49947 5.60700 5.76569 5.87235 6.03635 6.05606 6.12589 6.20651 6.21329 6.45608 6.48763 6.50109 6.54031 6.59857 6.73321 6.73811 6.89620 7.39330 7.49323 8.01618 8.19743 8.40861 9.08736 9.62857 10.66618 10.86127 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.004011 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.476354 B = 6979.393373 C = 7668.563938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.305 6.305 3 C 0.129 3.871 4 C -0.211 4.211 5 C -0.092 4.092 6 C -0.154 4.154 7 C -0.082 4.082 8 C -0.090 4.090 9 C -0.026 4.026 10 C -0.136 4.136 11 C -0.135 4.135 12 C 0.143 3.857 13 N -0.763 5.763 14 C 0.555 3.445 15 O -0.583 6.583 16 C -0.547 4.547 17 H 0.067 0.933 18 C 0.088 3.912 19 N -0.769 5.769 20 Si 0.906 3.094 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.265 1.265 24 H 0.097 0.903 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.123 0.877 28 H 0.120 0.880 29 H 0.122 0.878 30 H 0.139 0.861 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.049 0.951 39 H 0.379 0.621 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.384 2.934 0.025 20.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.084 3.916 4 C -0.230 4.230 5 C -0.110 4.110 6 C -0.172 4.172 7 C -0.100 4.100 8 C -0.091 4.091 9 C -0.027 4.027 10 C -0.193 4.193 11 C -0.193 4.193 12 C 0.018 3.982 13 N -0.420 5.420 14 C 0.359 3.641 15 O -0.466 6.466 16 C -0.584 4.584 17 H 0.085 0.915 18 C -0.131 4.131 19 N -0.398 5.398 20 Si 0.731 3.269 21 H -0.199 1.199 22 H -0.205 1.205 23 H -0.189 1.189 24 H 0.115 0.885 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.141 0.859 28 H 0.138 0.862 29 H 0.140 0.860 30 H 0.157 0.843 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.212 0.788 40 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.718 3.656 0.025 20.054 hybrid contribution -0.029 -0.875 -0.110 0.883 sum -19.747 2.781 -0.085 19.942 Atomic orbital electron populations 1.23025 0.79385 1.03651 1.01009 1.86178 1.20442 1.26652 1.88575 1.18798 0.91566 0.84119 0.97072 1.21137 0.99598 0.92461 1.09822 1.20870 0.94697 0.96740 0.98709 1.21076 0.93798 0.98492 1.03829 1.21240 1.01050 0.90942 0.96735 1.19260 0.90169 0.95494 1.04152 1.19576 0.94132 0.92126 0.96833 1.21844 1.01709 0.99626 0.96111 1.21840 1.01665 0.99720 0.96046 1.20997 0.87424 0.89468 1.00326 1.46149 1.07196 1.06070 1.82546 1.18196 0.79112 0.90559 0.76240 1.90589 1.70659 1.30489 1.54874 1.20889 0.91358 0.92278 1.53868 0.91495 1.25689 0.98078 0.96588 0.92741 1.70028 1.09684 1.24614 1.35438 0.86392 0.79248 0.82529 0.78764 1.19862 1.20520 1.18918 0.88474 0.92957 0.92965 0.85874 0.86243 0.85976 0.84327 0.91732 0.92054 0.93054 0.93052 0.92025 0.91785 0.93306 0.93314 0.78798 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 101.05 0.99 1.18 16 2 O -0.31 -3.60 6.16 -19.42 -0.12 -3.72 16 3 C 0.13 1.69 6.28 -39.22 -0.25 1.45 16 4 C -0.21 -2.39 9.04 -39.43 -0.36 -2.74 16 5 C -0.09 -1.02 10.04 -39.60 -0.40 -1.42 16 6 C -0.15 -1.91 10.04 -39.56 -0.40 -2.30 16 7 C -0.08 -1.19 8.97 -39.60 -0.36 -1.55 16 8 C -0.09 -1.33 4.77 -104.47 -0.50 -1.83 16 9 C -0.03 -0.42 0.51 -155.66 -0.08 -0.49 16 10 C -0.14 -2.03 8.08 37.16 0.30 -1.73 16 11 C -0.14 -2.03 8.09 37.16 0.30 -1.73 16 12 C 0.14 2.85 3.22 -4.04 -0.01 2.84 16 13 N -0.76 -17.44 4.95 -61.72 -0.31 -17.75 16 14 C 0.56 16.10 7.74 -12.99 -0.10 16.00 16 15 O -0.58 -19.21 15.05 5.20 0.08 -19.13 16 16 C -0.55 -15.71 9.53 -35.63 -0.34 -16.05 16 17 H 0.07 1.77 7.85 -52.49 -0.41 1.35 16 18 C 0.09 2.51 5.49 -17.37 -0.10 2.42 16 19 N -0.77 -23.42 11.85 55.55 0.66 -22.77 16 20 Si 0.91 20.44 29.56 -169.99 -5.03 15.41 16 21 H -0.27 -6.04 7.11 56.52 0.40 -5.63 16 22 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 23 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 24 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 26 H 0.05 0.35 7.66 -51.93 -0.40 -0.04 16 27 H 0.12 1.08 6.30 -52.48 -0.33 0.74 16 28 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 29 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 30 H 0.14 2.15 5.89 -52.49 -0.31 1.84 16 31 H 0.06 0.88 6.11 -51.93 -0.32 0.56 16 32 H 0.06 0.93 6.86 -51.93 -0.36 0.57 16 33 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.93 6.86 -51.93 -0.36 0.58 16 36 H 0.06 0.87 6.16 -51.93 -0.32 0.55 16 37 H 0.05 1.04 7.51 -51.93 -0.39 0.65 16 38 H 0.05 1.03 7.51 -51.93 -0.39 0.64 16 39 H 0.38 7.72 6.14 -40.82 -0.25 7.47 16 40 H 0.27 7.37 8.29 -40.82 -0.34 7.03 16 LS Contribution 321.91 15.07 4.85 4.85 Total: -1.00 -34.97 321.91 -6.63 -41.60 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -5.48 Total: 7.46 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -1.29 Total: -5.95 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: 0.35 Total: -40.51 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.04 Total: -22.85 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.03 Total: 15.41 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -34.97 -6.63 -41.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258719457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.403 kcal (2) G-P(sol) polarization free energy of solvation -34.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds