Wall clock time and date at job start Mon Mar 30 2020 01:57:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00234 * 2 1 4 4 C 1.38748 * 120.05533 * 0.02562 * 3 2 1 5 5 C 1.38126 * 119.94994 * 180.02562 * 4 3 2 6 6 C 1.38289 * 120.04761 * 359.97396 * 5 4 3 7 7 C 1.38240 * 120.11815 * 0.02562 * 6 5 4 8 8 C 1.38172 * 120.05487 * 0.28178 * 7 6 5 9 9 C 1.50699 * 120.03049 * 179.74341 * 8 7 6 10 10 C 1.52996 * 109.47299 * 119.99552 * 9 8 7 11 11 C 1.52996 * 109.46784 * 239.99676 * 9 8 7 12 12 C 1.52999 * 109.46868 * 359.97438 * 9 8 7 13 13 N 1.46505 * 109.46948 * 180.02562 * 12 9 8 14 14 C 1.34774 * 120.00167 * 180.02562 * 13 12 9 15 15 O 1.21691 * 119.99768 * 359.97438 * 14 13 12 16 16 C 1.46366 * 120.00226 * 179.97438 * 14 13 12 17 17 H 1.07999 * 119.99897 * 353.93744 * 16 14 13 18 18 C 1.40053 * 120.00144 * 173.93760 * 16 14 13 19 19 N 1.30661 * 119.99837 * 6.14459 * 18 16 14 20 20 Si 1.86806 * 119.99883 * 186.15166 * 18 16 14 21 21 H 1.48495 * 109.47056 * 94.98076 * 20 18 16 22 22 H 1.48493 * 109.46863 * 214.98133 * 20 18 16 23 23 H 1.48499 * 109.46947 * 334.98071 * 20 18 16 24 24 H 1.09007 * 109.47277 * 179.97438 * 1 2 3 25 25 H 1.08995 * 109.47303 * 300.00066 * 1 2 3 26 26 H 1.09004 * 109.47128 * 60.00140 * 1 2 3 27 27 H 1.08005 * 120.02913 * 359.97438 * 4 3 2 28 28 H 1.07993 * 119.97889 * 180.02562 * 5 4 3 29 29 H 1.08004 * 119.93891 * 180.02562 * 6 5 4 30 30 H 1.07999 * 119.97484 * 179.97438 * 7 6 5 31 31 H 1.08997 * 109.47256 * 59.99828 * 10 9 8 32 32 H 1.09000 * 109.47400 * 179.97438 * 10 9 8 33 33 H 1.09002 * 109.46984 * 299.99833 * 10 9 8 34 34 H 1.09002 * 109.47628 * 59.99366 * 11 9 8 35 35 H 1.09000 * 109.47467 * 179.97438 * 11 9 8 36 36 H 1.09007 * 109.46925 * 299.99781 * 11 9 8 37 37 H 1.08997 * 109.47490 * 300.00369 * 12 9 8 38 38 H 1.09002 * 109.47204 * 60.00296 * 12 9 8 39 39 H 0.97003 * 119.99619 * 359.97438 * 13 12 9 40 40 H 0.97001 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9209 3.6048 0.0000 6 6 3.3019 3.6757 -0.0005 7 6 4.0560 2.5171 -0.0011 8 6 3.4312 1.2847 -0.0069 9 6 4.2538 0.0221 -0.0133 10 6 3.9283 -0.8050 1.2319 11 6 3.9274 -0.7928 -1.2665 12 6 5.7408 0.3822 -0.0126 13 7 6.5405 -0.8453 -0.0195 14 6 7.8863 -0.7728 -0.0196 15 8 8.4371 0.3122 -0.0145 16 6 8.6852 -1.9992 -0.0259 17 1 8.2007 -2.9598 0.0684 18 6 10.0780 -1.9269 -0.1541 19 7 10.6753 -0.7648 -0.1473 20 14 11.0817 -3.4920 -0.3350 21 1 11.3180 -3.7648 -1.7754 22 1 12.3848 -3.3272 0.3578 23 1 10.3403 -4.6281 0.2689 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.2128 2.3203 0.0005 28 1 1.3341 4.5114 0.0008 29 1 3.7922 4.6380 -0.0005 30 1 5.1344 2.5752 -0.0019 31 1 2.8689 -1.0615 1.2311 32 1 4.5229 -1.7185 1.2271 33 1 4.1608 -0.2245 2.1247 34 1 4.1592 -0.2035 -2.1537 35 1 4.5226 -1.7059 -1.2715 36 1 2.8679 -1.0493 -1.2673 37 1 5.9724 0.9713 -0.8999 38 1 5.9735 0.9629 0.8800 39 1 6.1013 -1.7102 -0.0232 40 1 11.6399 -0.7147 -0.2365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258719457.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:46 Heat of formation + Delta-G solvation = -82.429714 kcal Electronic energy + Delta-G solvation = -21712.097214 eV Core-core repulsion = 18490.904452 eV Total energy + Delta-G solvation = -3221.192762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.56719 -39.65051 -38.41938 -37.32296 -34.70566 -33.68771 -31.30585 -30.58123 -28.96329 -28.12810 -28.11609 -26.62091 -23.88251 -22.83257 -21.75839 -20.34400 -19.32622 -18.73067 -17.50788 -17.12200 -16.58371 -16.55730 -16.02577 -15.83950 -15.83070 -15.34807 -14.60263 -14.57598 -14.45496 -14.43676 -14.02427 -13.55360 -13.21039 -13.04378 -12.97373 -12.81185 -12.59530 -12.58893 -12.55695 -12.33312 -11.99574 -11.96496 -11.85026 -11.60266 -11.28326 -10.92485 -9.86418 -9.79495 -9.45367 -9.03432 -8.29040 -6.84085 0.38815 0.52312 1.40580 1.42158 1.58097 2.25726 2.43552 2.48426 2.82605 3.11478 3.61996 3.70798 3.76715 4.03998 4.07021 4.15065 4.24930 4.36306 4.48735 4.51038 4.56521 4.72203 4.73789 4.78205 4.82697 4.91805 4.98582 5.01203 5.02704 5.16390 5.31295 5.33101 5.41108 5.46836 5.53794 5.67043 5.88623 5.90628 6.24525 6.29166 6.53683 6.87696 7.56696 8.50471 8.68551 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.031472 B = 0.004011 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 889.476354 B = 6979.393373 C = 7668.563938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.128 3.872 4 C -0.207 4.207 5 C -0.085 4.085 6 C -0.162 4.162 7 C -0.106 4.106 8 C -0.114 4.114 9 C -0.015 4.015 10 C -0.129 4.129 11 C -0.129 4.129 12 C 0.151 3.849 13 N -0.748 5.748 14 C 0.537 3.463 15 O -0.635 6.635 16 C -0.574 4.574 17 H 0.088 0.912 18 C 0.029 3.971 19 N -0.823 5.823 20 Si 0.999 3.001 21 H -0.263 1.263 22 H -0.272 1.272 23 H -0.247 1.247 24 H 0.115 0.885 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.156 0.844 28 H 0.154 0.846 29 H 0.136 0.864 30 H 0.112 0.888 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.394 0.606 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.884 1.470 -0.086 22.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.234 6.234 3 C 0.083 3.917 4 C -0.225 4.225 5 C -0.103 4.103 6 C -0.180 4.180 7 C -0.124 4.124 8 C -0.116 4.116 9 C -0.015 4.015 10 C -0.187 4.187 11 C -0.186 4.186 12 C 0.026 3.974 13 N -0.403 5.403 14 C 0.341 3.659 15 O -0.523 6.523 16 C -0.611 4.611 17 H 0.106 0.894 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.818 3.182 21 H -0.188 1.188 22 H -0.197 1.197 23 H -0.171 1.171 24 H 0.134 0.866 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.173 0.827 28 H 0.171 0.829 29 H 0.154 0.846 30 H 0.130 0.870 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.229 0.771 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -22.291 2.167 -0.083 22.396 hybrid contribution 0.620 -0.343 -0.065 0.711 sum -21.672 1.824 -0.147 21.749 Atomic orbital electron populations 1.23345 0.77017 1.05398 1.02175 1.86124 1.22838 1.26100 1.88351 1.18786 0.90853 0.85399 0.96669 1.21518 1.01158 0.91665 1.08181 1.21272 0.94076 0.98194 0.96722 1.21282 0.94813 0.98174 1.03731 1.21157 1.00118 0.92360 0.98774 1.19157 0.91338 0.94557 1.06507 1.19427 0.90842 0.93437 0.97803 1.21795 1.02832 0.98916 0.95116 1.21792 1.02791 0.99010 0.95051 1.20994 0.90261 0.87801 0.98328 1.45821 1.05850 1.07791 1.80875 1.18646 0.80977 0.90279 0.76027 1.90542 1.72260 1.32137 1.57316 1.21426 0.92482 0.92875 1.54307 0.89439 1.26992 0.99295 1.01024 0.91317 1.70198 1.10546 1.28112 1.36369 0.84989 0.77026 0.76911 0.79228 1.18778 1.19731 1.17054 0.86629 0.91725 0.91739 0.82661 0.82872 0.84626 0.87021 0.89748 0.92494 0.94055 0.94069 0.92469 0.89793 0.95387 0.95355 0.77139 0.91594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.17 9.81 113.37 1.11 1.29 16 2 O -0.32 -6.71 6.16 -92.40 -0.57 -7.28 16 3 C 0.13 3.12 6.28 22.51 0.14 3.27 16 4 C -0.21 -4.01 9.04 22.37 0.20 -3.81 16 5 C -0.08 -1.65 10.04 22.26 0.22 -1.42 16 6 C -0.16 -3.94 10.04 22.28 0.22 -3.72 16 7 C -0.11 -3.25 8.97 22.25 0.20 -3.05 16 8 C -0.11 -3.42 4.77 -19.77 -0.09 -3.52 16 9 C -0.01 -0.48 0.51 -52.93 -0.03 -0.50 16 10 C -0.13 -3.85 8.08 71.98 0.58 -3.27 16 11 C -0.13 -3.85 8.09 71.98 0.58 -3.27 16 12 C 0.15 6.44 3.22 86.38 0.28 6.72 16 13 N -0.75 -35.66 4.95 -467.41 -2.32 -37.98 16 14 C 0.54 32.51 7.74 86.36 0.67 33.17 16 15 O -0.63 -44.33 15.05 -4.32 -0.07 -44.39 16 16 C -0.57 -33.55 9.53 24.83 0.24 -33.32 16 17 H 0.09 4.58 7.85 -2.91 -0.02 4.55 16 18 C 0.03 1.64 5.49 85.31 0.47 2.11 16 19 N -0.82 -51.69 11.85 21.84 0.26 -51.43 16 20 Si 1.00 41.83 29.56 68.60 2.03 43.86 16 21 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.25 -9.56 7.11 99.48 0.71 -8.86 16 24 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 25 H 0.06 0.61 7.66 -2.39 -0.02 0.59 16 26 H 0.06 0.61 7.66 -2.38 -0.02 0.59 16 27 H 0.16 1.97 6.30 -2.91 -0.02 1.95 16 28 H 0.15 1.93 8.06 -2.91 -0.02 1.91 16 29 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 30 H 0.11 3.91 5.89 -2.91 -0.02 3.89 16 31 H 0.08 2.18 6.11 -2.39 -0.01 2.16 16 32 H 0.06 1.70 6.86 -2.39 -0.02 1.69 16 33 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.06 1.71 6.86 -2.39 -0.02 1.70 16 36 H 0.08 2.17 6.16 -2.38 -0.01 2.15 16 37 H 0.03 1.30 7.51 -2.39 -0.02 1.28 16 38 H 0.03 1.31 7.51 -2.39 -0.02 1.29 16 39 H 0.39 16.34 6.14 -92.71 -0.57 15.77 16 40 H 0.27 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -79.58 321.91 4.62 -74.96 By element: Atomic # 1 Polarization: 31.11 SS G_CDS: 0.48 Total: 31.60 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 4.80 Total: -9.33 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -2.06 Total: -89.41 kcal Atomic # 8 Polarization: -51.04 SS G_CDS: -0.63 Total: -51.68 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -79.58 4.62 -74.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258719457.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.469 kcal (2) G-P(sol) polarization free energy of solvation -79.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds