Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47412 * 240.00159 * 2 1 3 5 5 N 1.46896 * 109.47390 * 59.99508 * 4 2 1 6 6 C 1.46910 * 110.99923 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46902 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00011 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00008 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00350 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99642 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46955 * 90.00347 * 11 9 7 13 13 H 1.48502 * 109.47083 * 210.00111 * 11 9 7 14 14 H 1.48503 * 109.47320 * 330.00011 * 11 9 7 15 15 C 1.50699 * 109.47174 * 119.99438 * 2 1 3 16 16 C 1.38247 * 119.92634 * 120.02202 * 15 2 1 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 2 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 300.00614 * 15 2 1 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.09002 * 109.47217 * 300.00284 * 1 2 3 25 25 H 1.08999 * 109.46994 * 60.00656 * 1 2 3 26 26 H 1.08998 * 109.46816 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47071 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47241 * 299.99199 * 3 2 1 29 29 H 1.08997 * 109.47669 * 59.99435 * 3 2 1 30 30 H 1.09001 * 109.47195 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46685 * 299.99903 * 4 2 1 32 32 H 1.00900 * 110.99945 * 56.05651 * 5 4 2 33 33 H 1.08996 * 109.46775 * 300.00046 * 6 5 4 34 34 H 1.08995 * 109.47074 * 59.99876 * 6 5 4 35 35 H 0.96994 * 120.00222 * 179.97438 * 10 9 7 36 36 H 1.07994 * 119.93290 * 0.02562 * 16 15 2 37 37 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 38 38 H 1.08003 * 119.98943 * 0.02562 * 20 15 2 39 39 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 40 40 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5504 -0.0288 -2.4486 6 6 2.0210 -0.6953 -3.6703 7 6 1.5004 0.0419 -4.8771 8 1 0.8815 0.9177 -4.7494 9 6 1.8134 -0.4022 -6.1443 10 7 1.3587 0.2408 -7.1975 11 14 2.8833 -1.9175 -6.3651 12 1 2.0232 -3.1266 -6.4231 13 1 3.6556 -1.7984 -7.6280 14 1 3.8218 -2.0319 -5.2200 15 6 2.0323 -0.7103 1.2305 16 6 2.8274 -1.8339 1.1020 17 6 3.2949 -2.4860 2.2277 18 6 2.9599 -2.0194 3.4886 19 6 2.1589 -0.8875 3.6180 20 6 1.6974 -0.2367 2.4852 21 8 1.9784 -0.6303 4.9463 22 6 2.3364 -1.8481 5.6258 23 8 3.2812 -2.4714 4.7359 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9565 0.8899 30 1 3.1301 -0.7216 -1.2489 31 1 1.6767 -1.7489 -1.2492 32 1 1.8198 0.9435 -2.4402 33 1 3.1108 -0.6954 -3.6872 34 1 1.6573 -1.7227 -3.6868 35 1 1.5791 -0.0714 -8.0890 36 1 3.0875 -2.2005 0.1201 37 1 3.9203 -3.3604 2.1245 38 1 1.0760 0.6412 2.5827 39 1 1.4606 -2.4831 5.7605 40 1 2.8025 -1.6282 6.5863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258992398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = -39.049067 kcal Electronic energy + Delta-G solvation = -21271.780762 eV Core-core repulsion = 18052.469126 eV Total energy + Delta-G solvation = -3219.311636 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.32645 -39.36800 -36.48855 -36.36284 -33.89613 -32.08750 -30.67771 -29.38106 -27.61978 -27.05187 -26.17312 -24.67443 -23.06862 -22.54639 -21.10424 -19.56627 -18.04631 -17.49720 -17.40043 -16.60978 -16.38493 -15.17514 -15.03543 -14.62456 -14.46299 -14.12483 -13.98530 -13.58474 -13.39198 -13.16223 -13.06727 -12.93545 -12.72215 -12.37934 -11.96725 -11.78855 -11.49747 -11.43226 -11.10499 -10.94484 -10.71829 -10.58185 -10.45245 -10.23075 -9.81308 -9.28827 -8.93758 -8.59596 -8.14170 -7.46555 -6.06644 -4.04640 1.02625 1.10563 2.56785 3.23374 3.28232 3.35568 3.37300 3.46970 4.33783 4.40853 4.41223 4.54043 4.70820 4.76779 5.00234 5.12951 5.13381 5.17655 5.25889 5.32860 5.40049 5.44966 5.81919 5.85904 5.94152 5.96946 5.98607 6.07680 6.16970 6.18529 6.22553 6.27117 6.44810 6.55776 6.67632 6.77249 6.97543 7.02119 7.59708 7.87791 8.31918 8.64043 9.01415 9.55382 11.06665 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.003492 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.851955 B = 8016.106015 C = 8605.014873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.020 4.020 3 C -0.142 4.142 4 C 0.064 3.936 5 N -0.677 5.677 6 C 0.164 3.836 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.068 3.932 10 N -0.901 5.901 11 Si 0.877 3.123 12 H -0.276 1.276 13 H -0.287 1.287 14 H -0.268 1.268 15 C -0.048 4.048 16 C -0.111 4.111 17 C -0.096 4.096 18 C 0.017 3.983 19 C 0.030 3.970 20 C -0.094 4.094 21 O -0.311 6.311 22 C 0.214 3.786 23 O -0.312 6.312 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.023 0.977 31 H 0.069 0.931 32 H 0.336 0.664 33 H -0.016 1.016 34 H 0.022 0.978 35 H 0.264 0.736 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -3.705 24.024 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.021 4.021 3 C -0.199 4.199 4 C -0.066 4.066 5 N -0.309 5.309 6 C 0.036 3.964 7 C -0.554 4.554 8 H 0.097 0.903 9 C -0.134 4.134 10 N -0.540 5.540 11 Si 0.705 3.295 12 H -0.202 1.202 13 H -0.213 1.213 14 H -0.193 1.193 15 C -0.049 4.049 16 C -0.129 4.129 17 C -0.114 4.114 18 C -0.026 4.026 19 C -0.014 4.014 20 C -0.113 4.113 21 O -0.228 6.228 22 C 0.102 3.898 23 O -0.229 6.229 24 H 0.064 0.936 25 H 0.099 0.901 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.090 0.910 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.001 0.999 34 H 0.040 0.960 35 H 0.073 0.927 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.099 0.901 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 1.858 -3.986 24.017 24.416 hybrid contribution 1.506 -0.725 0.073 1.673 sum 3.364 -4.711 24.090 24.776 Atomic orbital electron populations 1.21768 0.92543 1.02102 1.02132 1.19515 0.96870 0.94956 0.90744 1.21926 1.00899 0.94665 1.02460 1.22064 0.96238 0.98238 0.90080 1.60503 1.63298 1.06059 1.01027 1.19992 0.92834 0.95324 0.88253 1.21056 1.31981 1.13778 0.88564 0.90287 1.24909 0.95740 0.96805 0.95896 1.69895 1.45605 1.40319 0.98135 0.86828 0.81142 0.83862 0.77697 1.20155 1.21255 1.19258 1.19705 0.96402 0.95217 0.93594 1.21077 0.97959 0.95418 0.98404 1.20091 1.02422 1.01223 0.87710 1.19789 1.00205 0.95894 0.86754 1.19738 1.00654 0.96413 0.84596 1.19867 1.01781 1.01546 0.88106 1.87345 1.85065 1.35299 1.15052 1.25572 0.90994 0.80274 0.92996 1.87341 1.53285 1.67684 1.14579 0.93631 0.90122 0.92867 0.92787 0.90961 0.92623 0.95872 0.91310 0.84559 0.99874 0.96030 0.92650 0.83875 0.84858 0.84766 0.90089 0.85417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 8.13 37.16 0.30 -1.36 16 2 C -0.02 -0.27 0.67 -155.66 -0.10 -0.37 16 3 C -0.14 -1.73 7.96 37.16 0.30 -1.44 16 4 C 0.06 1.00 3.30 -3.83 -0.01 0.98 16 5 N -0.68 -13.20 5.70 -115.06 -0.66 -13.86 16 6 C 0.16 3.87 4.51 -4.97 -0.02 3.85 16 7 C -0.52 -14.52 9.87 -34.44 -0.34 -14.86 16 8 H 0.08 2.41 8.06 -52.49 -0.42 1.98 16 9 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 10 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 11 Si 0.88 21.39 27.47 -169.99 -4.67 16.72 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 14 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 15 C -0.05 -0.59 4.76 -104.62 -0.50 -1.09 16 16 C -0.11 -1.32 8.97 -39.58 -0.35 -1.67 16 17 C -0.10 -1.10 10.06 -39.46 -0.40 -1.50 16 18 C 0.02 0.22 7.15 -39.08 -0.28 -0.06 16 19 C 0.03 0.38 7.15 -39.08 -0.28 0.10 16 20 C -0.09 -1.13 8.72 -39.47 -0.34 -1.47 16 21 O -0.31 -3.61 11.40 -45.68 -0.52 -4.13 16 22 C 0.21 1.80 8.89 101.05 0.90 2.70 16 23 O -0.31 -3.60 11.40 -45.70 -0.52 -4.12 16 24 H 0.04 0.51 7.38 -51.93 -0.38 0.12 16 25 H 0.08 1.18 7.60 -51.93 -0.39 0.78 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.66 8.14 -51.92 -0.42 0.23 16 28 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 29 H 0.05 0.59 7.38 -51.93 -0.38 0.21 16 30 H 0.02 0.36 7.51 -51.93 -0.39 -0.03 16 31 H 0.07 1.08 7.51 -51.93 -0.39 0.69 16 32 H 0.34 6.34 6.76 -39.29 -0.27 6.08 16 33 H -0.02 -0.39 7.20 -51.93 -0.37 -0.76 16 34 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 35 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 36 H 0.14 1.62 5.88 -52.49 -0.31 1.31 16 37 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.13 1.44 7.09 -52.48 -0.37 1.06 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 321.75 15.07 4.85 4.85 Total: -1.00 -31.54 321.75 -7.68 -39.22 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.70 Total: 2.40 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: -1.23 Total: -14.33 kcal Atomic # 7 Polarization: -40.71 SS G_CDS: 0.12 Total: -40.59 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: -1.04 Total: -8.26 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.54 -7.68 -39.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258992398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.168 kcal (2) G-P(sol) polarization free energy of solvation -31.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds