Wall clock time and date at job start Mon Mar 30 2020 01:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53002 * 109.46856 * 2 1 4 4 C 1.52995 * 109.47412 * 240.00159 * 2 1 3 5 5 N 1.46896 * 109.47390 * 59.99508 * 4 2 1 6 6 C 1.46910 * 110.99923 * 180.02562 * 5 4 2 7 7 C 1.50697 * 109.46902 * 180.02562 * 6 5 4 8 8 H 1.07995 * 120.00011 * 359.97438 * 7 6 5 9 9 C 1.37878 * 120.00008 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00350 * 179.97438 * 9 7 6 11 11 Si 1.86801 * 119.99642 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46955 * 90.00347 * 11 9 7 13 13 H 1.48502 * 109.47083 * 210.00111 * 11 9 7 14 14 H 1.48503 * 109.47320 * 330.00011 * 11 9 7 15 15 C 1.50699 * 109.47174 * 119.99438 * 2 1 3 16 16 C 1.38247 * 119.92634 * 120.02202 * 15 2 1 17 17 C 1.38240 * 120.14459 * 179.75199 * 16 15 2 18 18 C 1.38552 * 120.02633 * 0.42901 * 17 16 15 19 19 C 1.39265 * 119.82706 * 359.57585 * 18 17 16 20 20 C 1.38231 * 119.92969 * 300.00614 * 15 2 1 21 21 O 1.36496 * 108.64230 * 180.24572 * 19 18 17 22 22 C 1.43981 * 105.48444 * 342.72036 * 21 19 18 23 23 O 1.36505 * 131.53353 * 179.87931 * 18 17 16 24 24 H 1.09002 * 109.47217 * 300.00284 * 1 2 3 25 25 H 1.08999 * 109.46994 * 60.00656 * 1 2 3 26 26 H 1.08998 * 109.46816 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.47071 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47241 * 299.99199 * 3 2 1 29 29 H 1.08997 * 109.47669 * 59.99435 * 3 2 1 30 30 H 1.09001 * 109.47195 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46685 * 299.99903 * 4 2 1 32 32 H 1.00900 * 110.99945 * 56.05651 * 5 4 2 33 33 H 1.08996 * 109.46775 * 300.00046 * 6 5 4 34 34 H 1.08995 * 109.47074 * 59.99876 * 6 5 4 35 35 H 0.96994 * 120.00222 * 179.97438 * 10 9 7 36 36 H 1.07994 * 119.93290 * 0.02562 * 16 15 2 37 37 H 1.07997 * 119.99327 * 180.33354 * 17 16 15 38 38 H 1.08003 * 119.98943 * 0.02562 * 20 15 2 39 39 H 1.09007 * 110.56955 * 268.54960 * 22 21 19 40 40 H 1.09003 * 110.57719 * 145.67764 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 1.5504 -0.0288 -2.4486 6 6 2.0210 -0.6953 -3.6703 7 6 1.5004 0.0419 -4.8771 8 1 0.8815 0.9177 -4.7494 9 6 1.8134 -0.4022 -6.1443 10 7 1.3587 0.2408 -7.1975 11 14 2.8833 -1.9175 -6.3651 12 1 2.0232 -3.1266 -6.4231 13 1 3.6556 -1.7984 -7.6280 14 1 3.8218 -2.0319 -5.2200 15 6 2.0323 -0.7103 1.2305 16 6 2.8274 -1.8339 1.1020 17 6 3.2949 -2.4860 2.2277 18 6 2.9599 -2.0194 3.4886 19 6 2.1589 -0.8875 3.6180 20 6 1.6974 -0.2367 2.4852 21 8 1.9784 -0.6303 4.9463 22 6 2.3364 -1.8481 5.6258 23 8 3.2812 -2.4714 4.7359 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 -0.0005 28 1 1.6767 1.9563 -0.8900 29 1 1.6765 1.9565 0.8899 30 1 3.1301 -0.7216 -1.2489 31 1 1.6767 -1.7489 -1.2492 32 1 1.8198 0.9435 -2.4402 33 1 3.1108 -0.6954 -3.6872 34 1 1.6573 -1.7227 -3.6868 35 1 1.5791 -0.0714 -8.0890 36 1 3.0875 -2.2005 0.1201 37 1 3.9203 -3.3604 2.1245 38 1 1.0760 0.6412 2.5827 39 1 1.4606 -2.4831 5.7605 40 1 2.8025 -1.6282 6.5863 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258992398.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:19 Heat of formation + Delta-G solvation = -59.738862 kcal Electronic energy + Delta-G solvation = -21272.677939 eV Core-core repulsion = 18052.469126 eV Total energy + Delta-G solvation = -3220.208813 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.13856 -40.37056 -37.59848 -37.27278 -35.50543 -33.99254 -31.62183 -30.34405 -29.33343 -28.07016 -27.00946 -25.93600 -24.05937 -23.62575 -22.87156 -20.58943 -19.02680 -18.85626 -18.27422 -18.09751 -17.24044 -16.74204 -16.18575 -15.92308 -15.48658 -15.36187 -14.91989 -14.77422 -14.72882 -14.43537 -14.20671 -14.00019 -13.90888 -13.72372 -13.34568 -12.98909 -12.72872 -12.63270 -12.43324 -12.39680 -12.01412 -11.91181 -11.68842 -11.51720 -11.44100 -11.27603 -10.78211 -9.82331 -9.05732 -9.00920 -8.27551 -6.31617 0.11989 0.22285 1.37433 1.38524 1.49380 1.78451 2.36245 2.51692 2.56838 3.06983 3.44789 3.48072 3.72204 3.83584 3.94521 4.06697 4.12551 4.22062 4.25854 4.31150 4.38463 4.55914 4.74435 4.76784 4.86527 4.92712 4.96616 5.06888 5.08591 5.10202 5.14171 5.16474 5.26520 5.36808 5.45559 5.56104 5.56655 5.63765 5.98993 6.13208 6.59952 6.70725 6.81769 7.33575 8.89188 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034998 B = 0.003492 C = 0.003253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.851955 B = 8016.106015 C = 8605.014873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.011 4.011 3 C -0.141 4.141 4 C 0.065 3.935 5 N -0.683 5.683 6 C 0.174 3.826 7 C -0.525 4.525 8 H 0.038 0.962 9 C 0.007 3.993 10 N -0.949 5.949 11 Si 0.950 3.050 12 H -0.266 1.266 13 H -0.283 1.283 14 H -0.249 1.249 15 C -0.053 4.053 16 C -0.115 4.115 17 C -0.098 4.098 18 C 0.007 3.993 19 C 0.019 3.981 20 C -0.097 4.097 21 O -0.325 6.325 22 C 0.204 3.796 23 O -0.325 6.325 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.048 0.952 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.337 0.663 33 H -0.013 1.013 34 H 0.024 0.976 35 H 0.267 0.733 36 H 0.148 0.852 37 H 0.151 0.849 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.400 -5.151 26.017 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.012 4.012 3 C -0.199 4.199 4 C -0.064 4.064 5 N -0.315 5.315 6 C 0.045 3.955 7 C -0.564 4.564 8 H 0.057 0.943 9 C -0.191 4.191 10 N -0.590 5.590 11 Si 0.773 3.227 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.172 1.172 15 C -0.054 4.054 16 C -0.133 4.133 17 C -0.116 4.116 18 C -0.037 4.037 19 C -0.025 4.025 20 C -0.115 4.115 21 O -0.241 6.241 22 C 0.094 3.906 23 O -0.242 6.242 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.004 0.996 34 H 0.042 0.958 35 H 0.076 0.924 36 H 0.166 0.834 37 H 0.169 0.831 38 H 0.163 0.837 39 H 0.119 0.881 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 2.886 -5.429 26.050 26.765 hybrid contribution 1.121 -0.213 -0.441 1.223 sum 4.007 -5.642 25.608 26.527 Atomic orbital electron populations 1.21727 0.92607 1.01838 1.02092 1.19368 0.96720 0.95164 0.89905 1.21916 1.00940 0.94215 1.02779 1.22137 0.96668 0.98231 0.89403 1.60386 1.63724 1.06284 1.01076 1.19742 0.92604 0.94916 0.88207 1.21359 1.31301 1.12947 0.90768 0.94348 1.25881 0.97321 1.00438 0.95426 1.70053 1.47511 1.42562 0.98844 0.85672 0.79409 0.79343 0.78233 1.19137 1.20892 1.17227 1.19576 0.97002 0.95539 0.93243 1.21172 0.97953 0.95368 0.98835 1.20290 1.02332 1.01652 0.87350 1.20012 1.00251 0.96058 0.87364 1.19896 1.00854 0.96603 0.85134 1.19945 1.01847 1.01854 0.87880 1.87318 1.85232 1.36861 1.14731 1.26093 0.91749 0.79562 0.93205 1.87315 1.54262 1.68089 1.14555 0.91672 0.92135 0.93236 0.92708 0.92059 0.90887 0.95167 0.91135 0.84358 0.99573 0.95770 0.92436 0.83435 0.83133 0.83721 0.88071 0.82198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.12 8.13 71.98 0.59 -2.53 16 2 C -0.01 -0.27 0.67 -52.93 -0.04 -0.31 16 3 C -0.14 -3.26 7.96 71.98 0.57 -2.69 16 4 C 0.06 1.94 3.30 86.30 0.29 2.22 16 5 N -0.68 -26.38 5.70 -517.93 -2.95 -29.34 16 6 C 0.17 8.10 4.51 85.55 0.39 8.49 16 7 C -0.53 -30.15 9.87 25.60 0.25 -29.90 16 8 H 0.04 2.44 8.06 -2.91 -0.02 2.42 16 9 C 0.01 0.38 5.47 84.66 0.46 0.85 16 10 N -0.95 -59.27 13.96 21.45 0.30 -58.97 16 11 Si 0.95 43.68 27.47 68.60 1.88 45.56 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 14 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 15 C -0.05 -1.20 4.76 -19.86 -0.09 -1.30 16 16 C -0.12 -2.53 8.97 22.27 0.20 -2.33 16 17 C -0.10 -2.06 10.06 22.35 0.22 -1.84 16 18 C 0.01 0.17 7.15 22.59 0.16 0.33 16 19 C 0.02 0.45 7.15 22.59 0.16 0.61 16 20 C -0.10 -2.13 8.72 22.34 0.19 -1.94 16 21 O -0.32 -6.91 11.40 -76.01 -0.87 -7.78 16 22 C 0.20 2.95 8.89 113.37 1.01 3.96 16 23 O -0.33 -6.86 11.40 -76.10 -0.87 -7.73 16 24 H 0.06 1.34 7.38 -2.39 -0.02 1.33 16 25 H 0.06 1.75 7.60 -2.39 -0.02 1.73 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 28 H 0.06 1.54 6.57 -2.39 -0.02 1.53 16 29 H 0.07 1.42 7.38 -2.39 -0.02 1.40 16 30 H 0.03 0.88 7.51 -2.39 -0.02 0.86 16 31 H 0.07 2.09 7.51 -2.38 -0.02 2.07 16 32 H 0.34 12.82 6.76 -89.69 -0.61 12.22 16 33 H -0.01 -0.61 7.20 -2.39 -0.02 -0.63 16 34 H 0.02 1.12 7.57 -2.39 -0.02 1.10 16 35 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.15 3.04 5.88 -2.91 -0.02 3.02 16 37 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 38 H 0.15 2.78 7.09 -2.91 -0.02 2.76 16 39 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.16 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -68.25 321.75 2.25 -66.01 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: 0.39 Total: 18.61 kcal Atomic # 6 Polarization: -30.73 SS G_CDS: 4.36 Total: -26.37 kcal Atomic # 7 Polarization: -85.65 SS G_CDS: -2.65 Total: -88.31 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -1.73 Total: -15.50 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -68.25 2.25 -66.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258992398.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.269 kcal (2) G-P(sol) polarization free energy of solvation -68.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds