Wall clock time and date at job start Mon Mar 30 2020 02:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47376 * 2 1 4 4 C 1.53002 * 109.46820 * 239.99582 * 2 1 3 5 5 O 1.45201 * 109.47136 * 120.00283 * 2 1 3 6 6 C 1.34649 * 117.00164 * 59.99449 * 5 2 1 7 7 O 1.21512 * 119.99950 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00274 * 180.02562 * 6 5 2 9 9 C 1.39955 * 120.00186 * 185.31497 * 8 6 5 10 10 C 1.38870 * 120.06651 * 33.26896 * 9 8 6 11 11 C 1.38109 * 119.92667 * 180.02562 * 10 9 8 12 12 C 1.38290 * 120.07217 * 0.02562 * 11 10 9 13 13 C 1.50690 * 119.93116 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47589 * 89.99886 * 13 12 11 15 15 H 1.08004 * 119.99763 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00609 * 180.27047 * 14 13 12 17 17 N 1.31518 * 120.00389 * 179.72400 * 16 14 13 18 18 Si 1.86801 * 119.99582 * 359.73434 * 16 14 13 19 19 H 1.48496 * 109.47480 * 89.99647 * 18 16 14 20 20 H 1.48505 * 109.46698 * 209.99556 * 18 16 14 21 21 H 1.48495 * 109.47133 * 329.98962 * 18 16 14 22 22 C 1.38279 * 120.13474 * 0.23611 * 12 11 10 23 23 C 1.38108 * 120.07469 * 359.48988 * 22 12 11 24 24 H 1.09004 * 109.46416 * 299.99949 * 1 2 3 25 25 H 1.08998 * 109.46814 * 59.99718 * 1 2 3 26 26 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47309 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47380 * 299.99936 * 3 2 1 29 29 H 1.09002 * 109.47693 * 59.99938 * 3 2 1 30 30 H 1.08997 * 109.47470 * 300.00127 * 4 2 1 31 31 H 1.09004 * 109.46434 * 60.00799 * 4 2 1 32 32 H 1.09001 * 109.47076 * 179.97438 * 4 2 1 33 33 H 0.96997 * 119.99690 * 5.31620 * 8 6 5 34 34 H 1.07999 * 120.03291 * 359.97438 * 10 9 8 35 35 H 1.08002 * 119.96663 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47350 * 329.99890 * 13 12 11 37 37 H 1.08994 * 109.47463 * 210.00326 * 13 12 11 38 38 H 0.96997 * 119.99917 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.95872 * 179.71778 * 22 12 11 40 40 H 1.07997 * 120.04016 * 180.23566 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9725 1.3383 7 8 0.9515 -2.5098 0.5036 8 7 2.0672 -2.6656 2.4171 9 6 1.7852 -4.0325 2.5216 10 6 1.7369 -4.8221 1.3803 11 6 1.4580 -6.1706 1.4866 12 6 1.2264 -6.7345 2.7279 13 6 0.9217 -8.2060 2.8402 14 6 2.2072 -8.9737 3.0106 15 1 3.1506 -8.4484 3.0355 16 6 2.1796 -10.3470 3.1296 17 7 3.3020 -11.0174 3.2728 18 14 0.5479 -11.2554 3.0871 19 1 0.2199 -11.6187 1.6851 20 1 0.6468 -12.4890 3.9080 21 1 -0.5199 -10.3808 3.6347 22 6 1.2685 -5.9497 3.8657 23 6 1.5525 -4.6018 3.7666 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7210 -1.2495 33 1 2.5612 -2.2171 3.1212 34 1 1.9165 -4.3820 0.4105 35 1 1.4206 -6.7854 0.5994 36 1 0.4149 -8.5422 1.9356 37 1 0.2782 -8.3790 3.7027 38 1 3.2825 -11.9835 3.3569 39 1 1.0827 -6.3922 4.8332 40 1 1.5889 -3.9902 4.6560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260767328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:08 Heat of formation + Delta-G solvation = -62.842092 kcal Electronic energy + Delta-G solvation = -21044.853291 eV Core-core repulsion = 17824.509912 eV Total energy + Delta-G solvation = -3220.343379 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.07313 -39.10374 -37.19404 -35.02745 -34.16234 -32.88532 -30.76293 -30.39599 -27.66646 -27.59167 -27.14818 -23.75103 -22.44612 -22.03120 -20.27143 -20.00471 -18.31541 -17.33913 -16.76524 -16.38674 -16.19442 -14.98139 -14.93184 -14.63726 -14.19643 -14.06152 -13.80134 -13.25834 -12.96099 -12.78165 -12.68870 -12.45818 -12.34244 -12.13036 -12.11628 -11.83266 -11.61851 -11.56481 -11.40057 -10.84237 -10.58966 -10.49983 -10.22833 -10.19368 -9.90887 -9.62115 -9.32647 -8.58010 -8.37816 -7.46873 -6.07062 -4.06199 1.75136 1.96812 2.09656 2.84981 3.29636 3.37352 3.40295 4.01986 4.39930 4.42123 4.46943 4.51481 4.65671 5.20639 5.23537 5.27960 5.29085 5.38981 5.43785 5.47918 5.52691 5.62897 5.72324 5.79118 5.88736 5.99590 6.08016 6.08261 6.15498 6.30277 6.54160 6.70011 6.77540 6.93899 7.03445 7.04974 7.40957 7.55409 7.59208 7.71273 8.30859 8.49943 8.98340 9.53304 11.05870 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042210 B = 0.003194 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.193721 B = 8763.580906 C = 8880.236434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.136 3.864 3 C -0.140 4.140 4 C -0.185 4.185 5 O -0.365 6.365 6 C 0.648 3.352 7 O -0.550 6.550 8 N -0.647 5.647 9 C 0.122 3.878 10 C -0.116 4.116 11 C -0.104 4.104 12 C -0.036 4.036 13 C 0.014 3.986 14 C -0.513 4.513 15 H 0.074 0.926 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.878 3.122 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.264 1.264 22 C -0.104 4.104 23 C -0.139 4.139 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.411 0.589 34 H 0.127 0.873 35 H 0.123 0.877 36 H 0.024 0.976 37 H 0.028 0.972 38 H 0.264 0.736 39 H 0.125 0.875 40 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.856 23.569 -4.474 24.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.100 3.900 3 C -0.197 4.197 4 C -0.242 4.242 5 O -0.280 6.280 6 C 0.402 3.598 7 O -0.438 6.438 8 N -0.298 5.298 9 C 0.030 3.970 10 C -0.136 4.136 11 C -0.122 4.122 12 C -0.037 4.037 13 C -0.023 4.023 14 C -0.551 4.551 15 H 0.092 0.908 16 C -0.133 4.133 17 N -0.539 5.539 18 Si 0.705 3.295 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.189 1.189 22 C -0.122 4.122 23 C -0.159 4.159 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.247 0.753 34 H 0.144 0.856 35 H 0.141 0.859 36 H 0.042 0.958 37 H 0.047 0.953 38 H 0.074 0.926 39 H 0.143 0.857 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.114 23.250 -4.948 24.124 hybrid contribution -0.429 -0.333 0.283 0.612 sum -4.543 22.918 -4.665 23.825 Atomic orbital electron populations 1.22528 0.93923 1.05291 1.02421 1.22082 0.94431 0.91448 0.82069 1.21859 1.02279 0.92519 1.03086 1.22534 1.01644 1.03687 0.96358 1.86289 1.71432 1.23657 1.46661 1.18044 0.78825 0.80455 0.82462 1.90925 1.39840 1.70038 1.42974 1.41989 1.58233 1.08055 1.21566 1.17308 1.04687 0.80162 0.94824 1.21006 1.01564 0.93443 0.97566 1.20964 0.99761 0.93544 0.97979 1.20318 0.94117 0.97146 0.92127 1.18809 0.98120 0.88014 0.97373 1.20940 0.92404 0.91401 1.50311 0.90781 1.25002 0.96276 0.97481 0.94520 1.69901 1.26258 1.07655 1.50079 0.86804 0.84764 0.79466 0.78478 1.20160 1.21292 1.18890 1.20851 1.00319 0.92158 0.98917 1.20701 1.04030 0.96032 0.95166 0.92205 0.91121 0.89192 0.91442 0.90116 0.91501 0.89192 0.91108 0.92093 0.75292 0.85551 0.85869 0.95774 0.95343 0.92608 0.85708 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 8.37 37.16 0.31 -1.49 16 2 C 0.14 1.34 1.13 -90.62 -0.10 1.24 16 3 C -0.14 -0.97 8.85 37.15 0.33 -0.64 16 4 C -0.19 -1.83 8.37 37.16 0.31 -1.52 16 5 O -0.37 -4.38 9.94 -40.35 -0.40 -4.78 16 6 C 0.65 9.11 7.79 54.06 0.42 9.53 16 7 O -0.55 -8.90 9.57 -19.28 -0.18 -9.09 16 8 N -0.65 -8.62 5.35 -14.26 -0.08 -8.70 16 9 C 0.12 1.97 6.28 -83.68 -0.53 1.45 16 10 C -0.12 -2.08 8.66 -39.40 -0.34 -2.42 16 11 C -0.10 -2.04 9.69 -39.61 -0.38 -2.42 16 12 C -0.04 -0.76 5.07 -104.59 -0.53 -1.30 16 13 C 0.01 0.33 4.17 -29.04 -0.12 0.21 16 14 C -0.51 -14.46 9.65 -34.44 -0.33 -14.79 16 15 H 0.07 2.28 7.98 -52.48 -0.42 1.86 16 16 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 17 N -0.90 -27.52 13.96 55.43 0.77 -26.75 16 18 Si 0.88 21.33 27.46 -169.99 -4.67 16.66 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.26 -6.14 6.55 56.52 0.37 -5.77 16 22 C -0.10 -1.92 9.69 -39.61 -0.38 -2.30 16 23 C -0.14 -2.20 9.96 -39.40 -0.39 -2.59 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 1.12 5.88 -51.93 -0.31 0.82 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 1.13 5.88 -51.93 -0.31 0.82 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.41 4.20 8.92 -40.82 -0.36 3.84 16 34 H 0.13 2.23 6.41 -52.49 -0.34 1.89 16 35 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 36 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 37 H 0.03 0.66 7.15 -51.93 -0.37 0.29 16 38 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 39 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 40 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 329.41 15.07 4.96 4.96 Total: -1.00 -31.83 329.41 -7.32 -39.15 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -5.89 Total: 3.70 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -1.84 Total: -15.16 kcal Atomic # 7 Polarization: -36.14 SS G_CDS: 0.70 Total: -35.45 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.59 Total: -13.87 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.83 -7.32 -39.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.694 kcal (2) G-P(sol) polarization free energy of solvation -31.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds