Wall clock time and date at job start Mon Mar 30 2020 02:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47376 * 2 1 4 4 C 1.53002 * 109.46820 * 239.99582 * 2 1 3 5 5 O 1.45201 * 109.47136 * 120.00283 * 2 1 3 6 6 C 1.34649 * 117.00164 * 59.99449 * 5 2 1 7 7 O 1.21512 * 119.99950 * 0.02562 * 6 5 2 8 8 N 1.34777 * 120.00274 * 180.02562 * 6 5 2 9 9 C 1.39955 * 120.00186 * 185.31497 * 8 6 5 10 10 C 1.38870 * 120.06651 * 33.26896 * 9 8 6 11 11 C 1.38109 * 119.92667 * 180.02562 * 10 9 8 12 12 C 1.38290 * 120.07217 * 0.02562 * 11 10 9 13 13 C 1.50690 * 119.93116 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47589 * 89.99886 * 13 12 11 15 15 H 1.08004 * 119.99763 * 0.02562 * 14 13 12 16 16 C 1.37873 * 120.00609 * 180.27047 * 14 13 12 17 17 N 1.31518 * 120.00389 * 179.72400 * 16 14 13 18 18 Si 1.86801 * 119.99582 * 359.73434 * 16 14 13 19 19 H 1.48496 * 109.47480 * 89.99647 * 18 16 14 20 20 H 1.48505 * 109.46698 * 209.99556 * 18 16 14 21 21 H 1.48495 * 109.47133 * 329.98962 * 18 16 14 22 22 C 1.38279 * 120.13474 * 0.23611 * 12 11 10 23 23 C 1.38108 * 120.07469 * 359.48988 * 22 12 11 24 24 H 1.09004 * 109.46416 * 299.99949 * 1 2 3 25 25 H 1.08998 * 109.46814 * 59.99718 * 1 2 3 26 26 H 1.08997 * 109.47203 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47309 * 179.97438 * 3 2 1 28 28 H 1.08998 * 109.47380 * 299.99936 * 3 2 1 29 29 H 1.09002 * 109.47693 * 59.99938 * 3 2 1 30 30 H 1.08997 * 109.47470 * 300.00127 * 4 2 1 31 31 H 1.09004 * 109.46434 * 60.00799 * 4 2 1 32 32 H 1.09001 * 109.47076 * 179.97438 * 4 2 1 33 33 H 0.96997 * 119.99690 * 5.31620 * 8 6 5 34 34 H 1.07999 * 120.03291 * 359.97438 * 10 9 8 35 35 H 1.08002 * 119.96663 * 180.02562 * 11 10 9 36 36 H 1.09003 * 109.47350 * 329.99890 * 13 12 11 37 37 H 1.08994 * 109.47463 * 210.00326 * 13 12 11 38 38 H 0.96997 * 119.99917 * 179.97438 * 17 16 14 39 39 H 1.08001 * 119.95872 * 179.71778 * 22 12 11 40 40 H 1.07997 * 120.04016 * 180.23566 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 8 2.0141 -0.6845 1.1855 6 6 1.6522 -1.9725 1.3383 7 8 0.9515 -2.5098 0.5036 8 7 2.0672 -2.6656 2.4171 9 6 1.7852 -4.0325 2.5216 10 6 1.7369 -4.8221 1.3803 11 6 1.4580 -6.1706 1.4866 12 6 1.2264 -6.7345 2.7279 13 6 0.9217 -8.2060 2.8402 14 6 2.2072 -8.9737 3.0106 15 1 3.1506 -8.4484 3.0355 16 6 2.1796 -10.3470 3.1296 17 7 3.3020 -11.0174 3.2728 18 14 0.5479 -11.2554 3.0871 19 1 0.2199 -11.6187 1.6851 20 1 0.6468 -12.4890 3.9080 21 1 -0.5199 -10.3808 3.6347 22 6 1.2685 -5.9497 3.8657 23 6 1.5525 -4.6018 3.7666 24 1 -0.3632 0.5139 0.8901 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6767 -1.7490 -1.2492 31 1 1.6767 -0.2074 -2.1392 32 1 3.1300 -0.7210 -1.2495 33 1 2.5612 -2.2171 3.1212 34 1 1.9165 -4.3820 0.4105 35 1 1.4206 -6.7854 0.5994 36 1 0.4149 -8.5422 1.9356 37 1 0.2782 -8.3790 3.7027 38 1 3.2825 -11.9835 3.3569 39 1 1.0827 -6.3922 4.8332 40 1 1.5889 -3.9902 4.6560 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260767328.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:07 Heat of formation + Delta-G solvation = -82.560042 kcal Electronic energy + Delta-G solvation = -21045.708325 eV Core-core repulsion = 17824.509912 eV Total energy + Delta-G solvation = -3221.198414 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.14100 -40.37218 -38.32433 -36.31445 -35.24924 -34.67982 -32.49511 -31.81444 -28.85376 -28.36076 -28.28238 -25.27047 -23.91963 -23.38271 -21.70554 -21.08041 -19.34565 -18.94774 -18.54732 -17.42453 -17.17276 -16.65246 -16.09182 -15.91675 -15.58216 -15.27053 -14.93674 -14.56786 -14.34974 -14.30739 -14.02247 -13.57962 -13.39420 -13.29062 -13.08816 -12.91751 -12.86548 -12.60032 -12.49730 -12.36093 -12.16861 -11.83475 -11.78426 -11.58705 -11.41325 -11.17906 -10.96502 -10.77131 -9.79211 -8.89901 -8.28157 -6.33022 0.37802 0.54732 1.05013 1.38723 1.39671 1.51921 1.70340 2.37042 2.94392 3.06114 3.06320 3.74428 3.79609 3.94465 4.00528 4.11150 4.30172 4.44396 4.58628 4.59097 4.62528 4.62968 4.77390 4.77569 4.85784 4.89141 5.04108 5.07711 5.14590 5.24925 5.29258 5.30869 5.34211 5.38408 5.47391 5.57585 5.64037 5.99246 6.12007 6.29749 6.32074 6.73424 7.24420 7.30450 8.88308 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.042210 B = 0.003194 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.193721 B = 8763.580906 C = 8880.236434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.125 3.875 3 C -0.135 4.135 4 C -0.183 4.183 5 O -0.361 6.361 6 C 0.647 3.353 7 O -0.573 6.573 8 N -0.638 5.638 9 C 0.133 3.867 10 C -0.124 4.124 11 C -0.116 4.116 12 C -0.071 4.071 13 C 0.020 3.980 14 C -0.518 4.518 15 H 0.029 0.971 16 C 0.007 3.993 17 N -0.950 5.950 18 Si 0.950 3.050 19 H -0.268 1.268 20 H -0.283 1.283 21 H -0.244 1.244 22 C -0.110 4.110 23 C -0.126 4.126 24 H 0.064 0.936 25 H 0.092 0.908 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.062 0.938 33 H 0.429 0.571 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.027 0.973 37 H 0.036 0.964 38 H 0.267 0.733 39 H 0.134 0.866 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.184 26.022 -4.123 26.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.089 3.911 3 C -0.192 4.192 4 C -0.240 4.240 5 O -0.276 6.276 6 C 0.401 3.599 7 O -0.462 6.462 8 N -0.291 5.291 9 C 0.041 3.959 10 C -0.144 4.144 11 C -0.135 4.135 12 C -0.071 4.071 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.048 0.952 16 C -0.190 4.190 17 N -0.590 5.590 18 Si 0.773 3.227 19 H -0.193 1.193 20 H -0.208 1.208 21 H -0.167 1.167 22 C -0.128 4.128 23 C -0.146 4.146 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.078 0.922 27 H 0.089 0.911 28 H 0.122 0.878 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.268 0.732 34 H 0.143 0.857 35 H 0.136 0.864 36 H 0.045 0.955 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.152 0.848 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -5.433 25.758 -4.589 26.722 hybrid contribution 0.075 -0.918 0.119 0.929 sum -5.358 24.840 -4.470 25.802 Atomic orbital electron populations 1.22487 0.93880 1.03639 1.03815 1.22487 0.94685 0.92799 0.81164 1.21888 1.02496 0.90235 1.04535 1.22507 1.01712 1.02226 0.97591 1.86317 1.71202 1.22345 1.47740 1.18174 0.78478 0.81096 0.82109 1.90934 1.40801 1.70731 1.43746 1.41854 1.58211 1.06960 1.22108 1.17375 1.02801 0.81311 0.94450 1.21026 1.02001 0.92981 0.98425 1.20964 1.00541 0.94425 0.97567 1.20198 0.97239 0.96055 0.93635 1.18655 0.95824 0.89651 0.97548 1.21174 0.92768 0.91904 1.49747 0.95227 1.25975 1.00444 0.98491 0.94060 1.70058 1.29045 1.08165 1.51775 0.85662 0.79984 0.78124 0.78949 1.19310 1.20843 1.16686 1.21031 1.00093 0.93244 0.98437 1.21004 1.01957 0.95259 0.96414 0.91660 0.88917 0.92247 0.91134 0.87824 0.90899 0.92189 0.88870 0.91920 0.73245 0.85663 0.86447 0.95520 0.94580 0.92390 0.84773 0.82268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 8.37 71.98 0.60 -2.62 16 2 C 0.12 2.21 1.13 -10.79 -0.01 2.20 16 3 C -0.13 -1.44 8.85 71.98 0.64 -0.80 16 4 C -0.18 -3.39 8.37 71.98 0.60 -2.79 16 5 O -0.36 -8.01 9.94 -55.59 -0.55 -8.56 16 6 C 0.65 17.39 7.79 129.79 1.01 18.41 16 7 O -0.57 -18.42 9.57 19.80 0.19 -18.24 16 8 N -0.64 -15.73 5.35 -429.45 -2.30 -18.03 16 9 C 0.13 4.12 6.28 38.15 0.24 4.36 16 10 C -0.12 -4.47 8.66 22.39 0.19 -4.27 16 11 C -0.12 -4.67 9.69 22.25 0.22 -4.46 16 12 C -0.07 -2.99 5.07 -19.85 -0.10 -3.09 16 13 C 0.02 0.98 4.17 29.10 0.12 1.10 16 14 C -0.52 -30.14 9.65 25.60 0.25 -29.89 16 15 H 0.03 1.92 7.98 -2.91 -0.02 1.90 16 16 C 0.01 0.42 5.47 84.65 0.46 0.88 16 17 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 18 Si 0.95 44.07 27.46 68.60 1.88 45.95 16 19 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.24 -10.40 6.55 99.48 0.65 -9.75 16 22 C -0.11 -3.93 9.69 22.25 0.22 -3.72 16 23 C -0.13 -3.70 9.96 22.39 0.22 -3.48 16 24 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 25 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 26 H 0.06 1.46 5.88 -2.39 -0.01 1.44 16 27 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 1.50 5.88 -2.39 -0.01 1.49 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.43 7.54 8.92 -92.71 -0.83 6.71 16 34 H 0.13 4.49 6.41 -2.91 -0.02 4.48 16 35 H 0.12 4.67 8.06 -2.91 -0.02 4.65 16 36 H 0.03 1.24 7.51 -2.39 -0.02 1.23 16 37 H 0.04 1.65 7.15 -2.39 -0.02 1.63 16 38 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 39 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 40 H 0.16 3.33 8.06 -2.91 -0.02 3.30 16 Total: -1.00 -71.33 329.41 4.34 -66.99 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.16 Total: 19.55 kcal Atomic # 6 Polarization: -32.82 SS G_CDS: 4.66 Total: -28.16 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -2.00 Total: -77.54 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.36 Total: -26.80 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -71.33 4.34 -66.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260767328.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.569 kcal (2) G-P(sol) polarization free energy of solvation -71.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds