Wall clock time and date at job start Mon Mar 30 2020 02:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46759 * 2 1 4 4 C 1.52993 * 109.47303 * 120.00274 * 2 1 3 5 5 O 1.42901 * 109.47328 * 65.00238 * 4 2 1 6 6 C 1.35714 * 117.00012 * 180.02562 * 5 4 2 7 7 C 1.39015 * 119.90478 * 0.29453 * 6 5 4 8 8 C 1.37684 * 120.08999 * 180.25862 * 7 6 5 9 9 C 1.39795 * 119.90611 * 359.44742 * 8 7 6 10 10 C 1.47507 * 120.09244 * 180.30054 * 9 8 7 11 11 O 1.21616 * 119.99672 * 318.98856 * 10 9 8 12 12 N 1.34779 * 119.99662 * 138.99178 * 10 9 8 13 13 C 1.46500 * 120.00142 * 7.76356 * 12 10 9 14 14 C 1.36901 * 119.99604 * 187.76282 * 12 10 9 15 15 H 1.08003 * 119.99898 * 317.83276 * 14 12 10 16 16 C 1.39013 * 119.99952 * 137.83921 * 14 12 10 17 17 N 1.31384 * 120.00562 * 44.08722 * 16 14 12 18 18 Si 1.86805 * 119.99905 * 224.08618 * 16 14 12 19 19 H 1.48500 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47166 * 120.00006 * 18 16 14 21 21 H 1.48504 * 109.47089 * 239.99996 * 18 16 14 22 22 C 1.39798 * 119.81657 * 0.27566 * 9 8 7 23 23 C 1.37684 * 119.89694 * 0.02562 * 22 9 8 24 24 H 1.08995 * 109.46895 * 299.99607 * 1 2 3 25 25 H 1.08994 * 109.47314 * 59.99963 * 1 2 3 26 26 H 1.09000 * 109.46540 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46903 * 240.00450 * 2 1 3 28 28 H 1.08999 * 109.46990 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47518 * 300.00170 * 3 2 1 30 30 H 1.09005 * 109.47045 * 60.00537 * 3 2 1 31 31 H 1.09002 * 109.47039 * 305.00110 * 4 2 1 32 32 H 1.09007 * 109.47345 * 185.00597 * 4 2 1 33 33 H 1.07997 * 119.95357 * 359.97438 * 7 6 5 34 34 H 1.08008 * 120.04764 * 179.72377 * 8 7 6 35 35 H 1.08998 * 109.47226 * 98.75939 * 13 12 10 36 36 H 1.09000 * 109.46379 * 218.75439 * 13 12 10 37 37 H 1.08999 * 109.47277 * 338.75443 * 13 12 10 38 38 H 0.96994 * 120.00353 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.04948 * 180.02562 * 22 9 8 40 40 H 1.08003 * 119.94967 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6621 -2.0982 1.1919 6 6 2.0393 -2.8844 2.2318 7 6 2.7551 -2.3372 3.2904 8 6 3.1443 -3.1324 4.3448 9 6 2.8088 -4.4895 4.3553 10 6 3.2180 -5.3438 5.4860 11 8 4.3259 -5.2196 5.9721 12 7 2.3641 -6.2620 5.9803 13 6 1.0989 -6.5310 5.2924 14 6 2.6791 -6.9433 7.1252 15 1 3.6834 -7.3112 7.2756 16 6 1.7064 -7.1617 8.0940 17 7 0.5025 -7.5509 7.7402 18 14 2.1111 -6.9018 9.8990 19 1 3.5248 -6.4671 10.0318 20 1 1.2169 -5.8582 10.4615 21 1 1.9135 -8.1742 10.6388 22 6 2.0840 -5.0345 3.2914 23 6 1.7041 -4.2334 2.2380 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6054 -0.2618 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 3.0101 -1.2878 3.2836 34 1 3.7042 -2.7075 5.1648 35 1 1.2028 -7.4245 4.6769 36 1 0.3109 -6.6869 6.0292 37 1 0.8417 -5.6816 4.6595 38 1 -0.1763 -7.7030 8.4161 39 1 1.8224 -6.0823 3.2958 40 1 1.1437 -4.6535 1.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000263807265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:58 Heat of formation + Delta-G solvation = -36.310806 kcal Electronic energy + Delta-G solvation = -21083.033682 eV Core-core repulsion = 17863.840786 eV Total energy + Delta-G solvation = -3219.192896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.12785 -38.74293 -36.89824 -35.27891 -34.66516 -32.03896 -30.76468 -29.74898 -27.45704 -26.79048 -26.29111 -24.68013 -22.51620 -22.19471 -20.35228 -19.41686 -18.04737 -17.06134 -16.45759 -16.09846 -15.67536 -14.98683 -14.54657 -14.38333 -14.22301 -14.19210 -13.66942 -13.46448 -13.18698 -12.95922 -12.68319 -12.50935 -12.26233 -12.14494 -11.68809 -11.56616 -11.41253 -11.36918 -11.16362 -11.05720 -10.80290 -10.60077 -10.51897 -10.29661 -10.14184 -8.67647 -8.59431 -8.46192 -7.82444 -7.63458 -6.63200 -3.86059 1.51758 1.66506 3.14548 3.18019 3.29878 3.41158 3.74996 4.10486 4.37692 4.49358 4.54528 4.68396 4.78959 5.01691 5.02870 5.11261 5.16810 5.19653 5.30432 5.37689 5.54929 5.61872 5.62446 5.65914 5.75061 5.79363 5.88688 6.00416 6.04764 6.30347 6.39278 6.51854 6.62524 6.70277 6.91587 6.97518 7.21257 7.55755 7.63357 8.30905 8.53524 9.14719 9.35630 10.02313 10.39646 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033663 B = 0.003463 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.573446 B = 8084.167570 C = 8245.128870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.062 3.938 5 O -0.315 6.315 6 C 0.127 3.873 7 C -0.216 4.216 8 C -0.040 4.040 9 C -0.130 4.130 10 C 0.490 3.510 11 O -0.582 6.582 12 N -0.436 5.436 13 C 0.042 3.958 14 C -0.347 4.347 15 H 0.097 0.903 16 C 0.075 3.925 17 N -0.825 5.825 18 Si 0.883 3.117 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.283 1.283 22 C -0.063 4.063 23 C -0.160 4.160 24 H 0.054 0.946 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.080 0.920 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.035 0.965 36 H 0.116 0.884 37 H 0.049 0.951 38 H 0.272 0.728 39 H 0.141 0.859 40 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.010 13.369 -13.863 19.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.204 4.204 4 C -0.013 4.013 5 O -0.229 6.229 6 C 0.082 3.918 7 C -0.235 4.235 8 C -0.059 4.059 9 C -0.134 4.134 10 C 0.279 3.721 11 O -0.468 6.468 12 N -0.154 5.154 13 C -0.101 4.101 14 C -0.472 4.472 15 H 0.114 0.886 16 C -0.135 4.135 17 N -0.458 5.458 18 Si 0.707 3.293 19 H -0.185 1.185 20 H -0.203 1.203 21 H -0.209 1.209 22 C -0.082 4.082 23 C -0.179 4.179 24 H 0.073 0.927 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.147 0.853 35 H 0.053 0.947 36 H 0.133 0.867 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.158 0.842 40 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.804 13.267 -13.713 19.285 hybrid contribution 0.054 0.187 0.988 1.007 sum -2.750 13.454 -12.724 18.721 Atomic orbital electron populations 1.21820 0.94358 1.02661 1.01600 1.21122 0.96977 0.95722 0.97517 1.21786 1.01239 0.94905 1.02426 1.22877 0.99519 0.79950 0.98956 1.85964 1.74482 1.20587 1.41842 1.19083 0.94979 0.90792 0.86991 1.21074 1.05845 1.00391 0.96170 1.20931 0.95780 0.92206 0.97027 1.20262 1.01351 0.95000 0.96767 1.17976 0.86699 0.82215 0.85189 1.90609 1.21020 1.71917 1.63215 1.43326 1.16882 1.32028 1.23167 1.22949 0.90384 0.97571 0.99171 1.19095 0.98045 1.37089 0.92994 0.88582 1.25502 0.94220 0.93368 1.00367 1.70032 1.05876 1.34312 1.35554 0.86644 0.80286 0.78427 0.83965 1.18543 1.20290 1.20885 1.21497 0.94533 1.00433 0.91690 1.20282 1.06075 0.90853 1.00661 0.92702 0.92636 0.91727 0.90137 0.92338 0.91817 0.92312 0.92028 0.92085 0.85719 0.85293 0.94691 0.86677 0.93234 0.91756 0.84158 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.09 37.16 0.34 -0.86 16 2 C -0.09 -0.78 3.16 -90.62 -0.29 -1.06 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 4 C 0.06 0.63 4.11 37.15 0.15 0.78 16 5 O -0.31 -4.19 9.66 -18.85 -0.18 -4.37 16 6 C 0.13 1.93 6.70 -39.01 -0.26 1.66 16 7 C -0.22 -3.31 9.01 -39.50 -0.36 -3.66 16 8 C -0.04 -0.74 9.64 -39.20 -0.38 -1.12 16 9 C -0.13 -2.71 5.30 -104.95 -0.56 -3.27 16 10 C 0.49 12.61 7.26 -12.48 -0.09 12.52 16 11 O -0.58 -16.92 16.84 5.26 0.09 -16.84 16 12 N -0.44 -11.47 2.99 -123.40 -0.37 -11.84 16 13 C 0.04 0.95 8.57 59.85 0.51 1.46 16 14 C -0.35 -9.84 8.74 -15.00 -0.13 -9.97 16 15 H 0.10 2.88 7.94 -52.48 -0.42 2.46 16 16 C 0.07 1.99 5.32 -17.46 -0.09 1.89 16 17 N -0.82 -21.38 10.79 55.50 0.60 -20.78 16 18 Si 0.88 20.48 29.69 -169.99 -5.05 15.43 16 19 H -0.26 -6.30 7.11 56.52 0.40 -5.90 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 C -0.06 -1.12 7.34 -39.20 -0.29 -1.41 16 23 C -0.16 -2.49 9.97 -39.50 -0.39 -2.88 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.06 0.61 7.82 -51.93 -0.41 0.20 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.60 7.64 -51.93 -0.40 0.20 16 32 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 33 H 0.12 1.55 6.28 -52.49 -0.33 1.22 16 34 H 0.13 2.35 8.06 -52.48 -0.42 1.93 16 35 H 0.03 0.75 7.79 -51.93 -0.40 0.34 16 36 H 0.12 2.81 5.13 -51.93 -0.27 2.55 16 37 H 0.05 0.99 4.58 -51.93 -0.24 0.75 16 38 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 39 H 0.14 2.41 5.73 -52.49 -0.30 2.11 16 40 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 LS Contribution 328.54 15.07 4.95 4.95 Total: -1.00 -31.19 328.54 -7.12 -38.31 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -5.67 Total: 1.62 kcal Atomic # 6 Polarization: -5.00 SS G_CDS: -1.49 Total: -6.49 kcal Atomic # 7 Polarization: -32.85 SS G_CDS: 0.23 Total: -32.62 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.09 Total: -21.20 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.05 Total: 15.43 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.19 -7.12 -38.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263807265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.001 kcal (2) G-P(sol) polarization free energy of solvation -31.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds