Wall clock time and date at job start Mon Mar 30 2020 02:44:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53002 * 109.46759 * 2 1 4 4 C 1.52993 * 109.47303 * 120.00274 * 2 1 3 5 5 O 1.42901 * 109.47328 * 65.00238 * 4 2 1 6 6 C 1.35714 * 117.00012 * 180.02562 * 5 4 2 7 7 C 1.39015 * 119.90478 * 0.29453 * 6 5 4 8 8 C 1.37684 * 120.08999 * 180.25862 * 7 6 5 9 9 C 1.39795 * 119.90611 * 359.44742 * 8 7 6 10 10 C 1.47507 * 120.09244 * 180.30054 * 9 8 7 11 11 O 1.21616 * 119.99672 * 318.98856 * 10 9 8 12 12 N 1.34779 * 119.99662 * 138.99178 * 10 9 8 13 13 C 1.46500 * 120.00142 * 7.76356 * 12 10 9 14 14 C 1.36901 * 119.99604 * 187.76282 * 12 10 9 15 15 H 1.08003 * 119.99898 * 317.83276 * 14 12 10 16 16 C 1.39013 * 119.99952 * 137.83921 * 14 12 10 17 17 N 1.31384 * 120.00562 * 44.08722 * 16 14 12 18 18 Si 1.86805 * 119.99905 * 224.08618 * 16 14 12 19 19 H 1.48500 * 109.47200 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47166 * 120.00006 * 18 16 14 21 21 H 1.48504 * 109.47089 * 239.99996 * 18 16 14 22 22 C 1.39798 * 119.81657 * 0.27566 * 9 8 7 23 23 C 1.37684 * 119.89694 * 0.02562 * 22 9 8 24 24 H 1.08995 * 109.46895 * 299.99607 * 1 2 3 25 25 H 1.08994 * 109.47314 * 59.99963 * 1 2 3 26 26 H 1.09000 * 109.46540 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46903 * 240.00450 * 2 1 3 28 28 H 1.08999 * 109.46990 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47518 * 300.00170 * 3 2 1 30 30 H 1.09005 * 109.47045 * 60.00537 * 3 2 1 31 31 H 1.09002 * 109.47039 * 305.00110 * 4 2 1 32 32 H 1.09007 * 109.47345 * 185.00597 * 4 2 1 33 33 H 1.07997 * 119.95357 * 359.97438 * 7 6 5 34 34 H 1.08008 * 120.04764 * 179.72377 * 8 7 6 35 35 H 1.08998 * 109.47226 * 98.75939 * 13 12 10 36 36 H 1.09000 * 109.46379 * 218.75439 * 13 12 10 37 37 H 1.08999 * 109.47277 * 338.75443 * 13 12 10 38 38 H 0.96994 * 120.00353 * 180.02562 * 17 16 14 39 39 H 1.07997 * 120.04948 * 180.02562 * 22 9 8 40 40 H 1.08003 * 119.94967 * 180.02562 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 8 1.6621 -2.0982 1.1919 6 6 2.0393 -2.8844 2.2318 7 6 2.7551 -2.3372 3.2904 8 6 3.1443 -3.1324 4.3448 9 6 2.8088 -4.4895 4.3553 10 6 3.2180 -5.3438 5.4860 11 8 4.3259 -5.2196 5.9721 12 7 2.3641 -6.2620 5.9803 13 6 1.0989 -6.5310 5.2924 14 6 2.6791 -6.9433 7.1252 15 1 3.6834 -7.3112 7.2756 16 6 1.7064 -7.1617 8.0940 17 7 0.5025 -7.5509 7.7402 18 14 2.1111 -6.9018 9.8990 19 1 3.5248 -6.4671 10.0318 20 1 1.2169 -5.8582 10.4615 21 1 1.9135 -8.1742 10.6388 22 6 2.0840 -5.0345 3.2914 23 6 1.7041 -4.2334 2.2380 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 3.1299 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6766 1.9563 0.8901 31 1 1.6054 -0.2618 2.1369 32 1 3.1264 -0.6443 1.2951 33 1 3.0101 -1.2878 3.2836 34 1 3.7042 -2.7075 5.1648 35 1 1.2028 -7.4245 4.6769 36 1 0.3109 -6.6869 6.0292 37 1 0.8417 -5.6816 4.6595 38 1 -0.1763 -7.7030 8.4161 39 1 1.8224 -6.0823 3.2958 40 1 1.1437 -4.6535 1.4158 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000263807265.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:57 Heat of formation + Delta-G solvation = -54.286438 kcal Electronic energy + Delta-G solvation = -21083.813164 eV Core-core repulsion = 17863.840786 eV Total energy + Delta-G solvation = -3219.972378 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.43065 -40.32825 -38.24284 -36.70235 -36.09689 -34.01259 -32.12829 -31.17960 -28.19030 -28.00782 -27.70005 -26.50531 -23.96746 -23.49996 -21.18805 -21.03237 -19.28834 -18.96152 -18.04777 -17.14455 -16.96983 -16.77226 -16.18126 -15.95265 -15.56854 -15.31122 -14.95492 -14.88588 -14.41193 -14.19103 -14.04731 -13.68472 -13.56168 -13.32073 -13.20297 -13.08393 -12.93996 -12.58211 -12.38273 -12.17268 -12.06027 -11.99962 -11.87995 -11.52484 -11.47677 -10.60947 -10.48304 -10.02202 -9.64850 -9.17272 -8.65505 -5.97384 0.11122 0.34411 1.27925 1.39060 1.53246 2.05559 2.16902 2.21447 2.63848 2.81845 3.16503 3.74450 3.83959 3.88146 3.94075 4.05942 4.15428 4.25268 4.36377 4.49827 4.55047 4.58933 4.70156 4.70858 4.82969 4.87974 5.01669 5.02006 5.03901 5.17425 5.21950 5.24719 5.28433 5.40119 5.43651 5.51239 5.63220 5.67375 6.18232 6.41825 6.53372 7.10064 7.37035 8.02682 8.37684 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.033663 B = 0.003463 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.573446 B = 8084.167570 C = 8245.128870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.051 3.949 5 O -0.315 6.315 6 C 0.142 3.858 7 C -0.206 4.206 8 C -0.048 4.048 9 C -0.164 4.164 10 C 0.481 3.519 11 O -0.633 6.633 12 N -0.449 5.449 13 C 0.050 3.950 14 C -0.397 4.397 15 H 0.061 0.939 16 C 0.050 3.950 17 N -0.830 5.830 18 Si 0.947 3.053 19 H -0.282 1.282 20 H -0.264 1.264 21 H -0.264 1.264 22 C -0.062 4.062 23 C -0.155 4.155 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.049 0.951 27 H 0.079 0.921 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.121 0.879 35 H 0.042 0.958 36 H 0.100 0.900 37 H 0.077 0.923 38 H 0.284 0.716 39 H 0.143 0.857 40 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.535 15.320 -15.279 22.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.201 4.201 4 C -0.024 4.024 5 O -0.228 6.228 6 C 0.095 3.905 7 C -0.224 4.224 8 C -0.067 4.067 9 C -0.168 4.168 10 C 0.272 3.728 11 O -0.522 6.522 12 N -0.166 5.166 13 C -0.092 4.092 14 C -0.522 4.522 15 H 0.079 0.921 16 C -0.160 4.160 17 N -0.462 5.462 18 Si 0.769 3.231 19 H -0.208 1.208 20 H -0.189 1.189 21 H -0.188 1.188 22 C -0.080 4.080 23 C -0.173 4.173 24 H 0.075 0.925 25 H 0.086 0.914 26 H 0.068 0.932 27 H 0.097 0.903 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.139 0.861 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.160 0.840 40 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -4.380 15.209 -15.148 21.908 hybrid contribution 0.487 -0.320 1.272 1.399 sum -3.894 14.889 -13.876 20.722 Atomic orbital electron populations 1.21827 0.94399 1.01880 1.02378 1.21145 0.96918 0.96557 0.96416 1.21777 1.01547 0.93588 1.03157 1.23243 1.00445 0.78248 1.00464 1.85999 1.74011 1.22099 1.40732 1.19200 0.93318 0.90987 0.86963 1.21288 1.04757 1.01539 0.94824 1.20965 0.96058 0.91667 0.98028 1.19958 1.04831 0.95411 0.96593 1.18775 0.85892 0.82117 0.86021 1.90542 1.23059 1.73274 1.65286 1.43516 1.17939 1.32100 1.23072 1.22913 0.88350 0.99122 0.98860 1.18905 0.97206 1.40336 0.95747 0.92083 1.26042 0.94184 0.92374 1.03358 1.70017 1.06206 1.32944 1.37065 0.85703 0.78855 0.79147 0.79412 1.20767 1.18901 1.18849 1.21455 0.94170 1.00857 0.91551 1.20513 1.05436 0.90966 1.00399 0.92538 0.91358 0.93232 0.90288 0.91881 0.90793 0.91942 0.91179 0.91045 0.82508 0.86095 0.93981 0.88223 0.90445 0.90544 0.83965 0.82481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.09 71.98 0.65 -1.34 16 2 C -0.09 -1.21 3.16 -10.79 -0.03 -1.25 16 3 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 4 C 0.05 0.85 4.11 71.98 0.30 1.14 16 5 O -0.31 -7.27 9.66 -90.36 -0.87 -8.15 16 6 C 0.14 3.86 6.70 22.64 0.15 4.02 16 7 C -0.21 -5.79 9.01 22.33 0.20 -5.58 16 8 C -0.05 -1.75 9.64 22.52 0.22 -1.53 16 9 C -0.16 -6.94 5.30 -20.08 -0.11 -7.04 16 10 C 0.48 25.92 7.26 86.69 0.63 26.55 16 11 O -0.63 -39.08 16.84 -4.08 -0.07 -39.15 16 12 N -0.45 -24.59 2.99 -662.57 -1.98 -26.57 16 13 C 0.05 2.27 8.57 127.77 1.10 3.37 16 14 C -0.40 -23.61 8.74 84.09 0.74 -22.88 16 15 H 0.06 3.95 7.94 -2.91 -0.02 3.93 16 16 C 0.05 2.72 5.32 84.95 0.45 3.17 16 17 N -0.83 -42.95 10.79 21.67 0.23 -42.71 16 18 Si 0.95 42.75 29.69 68.60 2.04 44.78 16 19 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 C -0.06 -2.14 7.34 22.52 0.17 -1.97 16 23 C -0.15 -4.40 9.97 22.32 0.22 -4.18 16 24 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.82 7.82 -2.39 -0.02 0.80 16 27 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 1.09 7.64 -2.39 -0.02 1.07 16 32 H 0.07 1.09 7.67 -2.38 -0.02 1.07 16 33 H 0.16 3.34 6.28 -2.91 -0.02 3.32 16 34 H 0.12 4.52 8.06 -2.91 -0.02 4.49 16 35 H 0.04 1.82 7.79 -2.39 -0.02 1.80 16 36 H 0.10 4.90 5.13 -2.39 -0.01 4.89 16 37 H 0.08 3.06 4.58 -2.39 -0.01 3.05 16 38 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 39 H 0.14 4.80 5.73 -2.91 -0.02 4.78 16 40 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 Total: -1.00 -70.26 328.54 5.72 -64.54 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.03 Total: 15.47 kcal Atomic # 6 Polarization: -13.55 SS G_CDS: 5.34 Total: -8.21 kcal Atomic # 7 Polarization: -67.54 SS G_CDS: -1.75 Total: -69.28 kcal Atomic # 8 Polarization: -46.35 SS G_CDS: -0.94 Total: -47.29 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.04 Total: 44.78 kcal Total: -70.26 5.72 -64.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000263807265.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.255 kcal (2) G-P(sol) polarization free energy of solvation -70.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds