Wall clock time and date at job start Mon Mar 30 2020 01:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99450 * 2 1 4 4 C 1.53005 * 109.46857 * 125.00188 * 3 2 1 5 5 C 1.52997 * 109.46963 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47283 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99548 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99759 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00646 * 0.02562 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46990 * 59.99741 * 14 12 10 16 16 H 1.48497 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 300.00255 * 14 12 10 18 18 C 1.46505 * 119.99455 * 180.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.07997 * 120.00346 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99882 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00346 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47424 * 5.00170 * 3 2 1 28 28 H 1.09002 * 109.46931 * 244.99684 * 3 2 1 29 29 H 1.09000 * 109.47431 * 59.99958 * 4 3 2 30 30 H 1.09002 * 109.46939 * 299.99491 * 4 3 2 31 31 H 1.09006 * 109.47088 * 60.00115 * 5 4 3 32 32 H 1.08999 * 109.47644 * 300.00395 * 5 4 3 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8003 2.6580 1.1813 6 6 4.7568 2.6859 2.3455 7 8 4.8204 1.7391 3.1008 8 7 5.5415 3.7629 2.5473 9 6 5.4642 4.9068 1.6353 10 6 6.4457 4.7173 0.5076 11 1 7.0654 3.8334 0.4738 12 6 6.5526 5.6723 -0.4812 13 7 5.7976 6.7484 -0.4403 14 14 7.7697 5.4378 -1.8787 15 1 7.4413 4.1920 -2.6172 16 1 7.6903 6.5967 -2.8038 17 1 9.1445 5.3379 -1.3262 18 6 6.4717 3.7898 3.6788 19 6 7.7988 3.2172 3.2517 20 6 8.8250 3.9137 2.7310 21 6 9.8623 2.9870 2.4779 22 6 9.4082 1.7798 2.8597 23 8 8.1594 1.9260 3.3319 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5067 1.0921 30 1 2.4771 1.2357 2.1130 31 1 3.0955 3.4848 1.2707 32 1 4.3581 2.7552 0.2499 33 1 4.4550 4.9808 1.2300 34 1 5.7059 5.8208 2.1776 35 1 5.8726 7.4201 -1.1361 36 1 6.6100 4.8186 4.0112 37 1 6.0659 3.1950 4.4971 38 1 8.8518 4.9769 2.5432 39 1 10.8332 3.2063 2.0586 40 1 9.9562 0.8510 2.8003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267363031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:43 Heat of formation + Delta-G solvation = -16.091665 kcal Electronic energy + Delta-G solvation = -21642.802466 eV Core-core repulsion = 18424.486338 eV Total energy + Delta-G solvation = -3218.316129 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.95117 -39.11709 -35.87975 -35.09333 -32.75998 -32.34941 -32.07515 -30.18957 -27.34718 -27.12193 -24.93920 -22.99770 -21.60298 -21.13664 -20.00961 -19.74104 -18.25418 -17.00042 -16.58620 -16.24145 -15.56654 -15.48547 -14.98767 -14.71625 -14.29929 -14.23281 -13.43710 -13.19226 -12.91658 -12.38938 -12.31353 -12.23003 -12.13866 -11.90215 -11.59132 -11.41141 -11.25350 -11.05838 -10.96008 -10.82417 -10.56656 -10.31933 -10.20038 -9.80046 -9.29528 -9.26492 -9.06810 -8.56343 -8.02171 -7.74259 -6.18337 -4.23628 2.24189 2.35046 3.14034 3.24357 3.29164 3.32384 3.36944 3.67603 4.04213 4.35004 4.94632 5.14991 5.18610 5.23933 5.28803 5.46054 5.51434 5.58096 5.65387 5.77084 5.85721 5.92421 6.00020 6.04579 6.13286 6.28632 6.35288 6.53143 6.54603 6.60983 6.64102 6.69377 6.75923 6.86764 7.08283 7.14322 7.47170 7.73716 7.77827 8.05695 8.28046 8.80949 9.00139 9.43854 10.88757 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.006402 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.456357 B = 4372.569257 C = 5829.299058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.098 4.098 4 C -0.096 4.096 5 C -0.134 4.134 6 C 0.518 3.482 7 O -0.568 6.568 8 N -0.596 5.596 9 C 0.236 3.764 10 C -0.528 4.528 11 H 0.062 0.938 12 C 0.066 3.934 13 N -0.894 5.894 14 Si 0.892 3.108 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.275 1.275 18 C 0.200 3.800 19 C -0.016 4.016 20 C -0.180 4.180 21 C -0.216 4.216 22 C -0.058 4.058 23 O -0.170 6.170 24 H 0.095 0.905 25 H 0.092 0.908 26 H 0.106 0.894 27 H 0.067 0.933 28 H 0.074 0.926 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.089 0.911 32 H 0.103 0.897 33 H 0.042 0.958 34 H 0.036 0.964 35 H 0.265 0.735 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.148 0.852 39 H 0.140 0.860 40 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.654 -6.599 3.356 7.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.160 4.160 3 C -0.135 4.135 4 C -0.134 4.134 5 C -0.174 4.174 6 C 0.307 3.693 7 O -0.449 6.449 8 N -0.327 5.327 9 C 0.117 3.883 10 C -0.567 4.567 11 H 0.080 0.920 12 C -0.136 4.136 13 N -0.532 5.532 14 Si 0.719 3.281 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 C 0.076 3.924 19 C -0.067 4.067 20 C -0.200 4.200 21 C -0.236 4.236 22 C -0.126 4.126 23 O -0.066 6.066 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.124 0.876 27 H 0.086 0.914 28 H 0.093 0.907 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.121 0.879 37 H 0.104 0.896 38 H 0.166 0.834 39 H 0.158 0.842 40 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -1.873 -7.102 3.761 8.252 hybrid contribution 1.118 0.198 -1.263 1.698 sum -0.755 -6.904 2.498 7.381 Atomic orbital electron populations 1.23793 0.95989 1.01505 1.03093 1.23034 0.95975 0.98814 0.98185 1.20834 0.98331 0.94953 0.99403 1.21262 0.97356 0.97114 0.97663 1.21635 0.98122 0.98839 0.98768 1.20647 0.81134 0.81632 0.85863 1.90606 1.70478 1.35578 1.48198 1.48353 1.36570 1.19279 1.28463 1.19510 0.98297 0.82609 0.87887 1.21438 1.21538 1.06257 1.07465 0.92016 1.24888 0.95858 0.94951 0.97924 1.69909 1.39221 1.09523 1.34571 0.86643 0.81880 0.77603 0.81925 1.20225 1.21259 1.20065 1.19623 0.82895 1.00255 0.89639 1.22944 0.97916 0.80848 1.05019 1.21568 0.93181 1.01214 1.04051 1.21771 1.01278 0.93192 1.07325 1.23849 0.84634 0.99917 1.04192 1.84062 1.29024 1.28622 1.64864 0.88683 0.88926 0.87589 0.91444 0.90707 0.91580 0.91722 0.89299 0.87835 0.94026 0.94623 0.92558 0.87948 0.89578 0.83403 0.84229 0.79033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.26 14.32 29.01 0.42 -1.85 16 2 C -0.14 -1.72 9.52 -36.02 -0.34 -2.06 16 3 C -0.10 -1.30 5.66 -27.88 -0.16 -1.46 16 4 C -0.10 -1.50 4.49 -26.73 -0.12 -1.62 16 5 C -0.13 -2.39 4.25 -27.88 -0.12 -2.51 16 6 C 0.52 10.73 7.67 -10.98 -0.08 10.65 16 7 O -0.57 -12.86 15.56 5.56 0.09 -12.78 16 8 N -0.60 -12.30 2.44 -176.43 -0.43 -12.73 16 9 C 0.24 5.36 5.01 -5.20 -0.03 5.33 16 10 C -0.53 -13.25 9.04 -34.44 -0.31 -13.56 16 11 H 0.06 1.64 7.65 -52.49 -0.40 1.24 16 12 C 0.07 1.71 5.46 -17.82 -0.10 1.62 16 13 N -0.89 -23.97 13.29 55.43 0.74 -23.23 16 14 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 16 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 18 C 0.20 3.72 5.98 -5.19 -0.03 3.69 16 19 C -0.02 -0.31 6.90 -35.62 -0.25 -0.56 16 20 C -0.18 -3.44 10.40 -39.70 -0.41 -3.85 16 21 C -0.22 -3.70 10.91 -39.71 -0.43 -4.13 16 22 C -0.06 -0.95 12.09 29.41 0.36 -0.60 16 23 O -0.17 -3.37 10.65 5.68 0.06 -3.31 16 24 H 0.09 0.99 7.84 -52.49 -0.41 0.58 16 25 H 0.09 0.88 8.06 -52.48 -0.42 0.45 16 26 H 0.11 1.21 8.06 -52.49 -0.42 0.79 16 27 H 0.07 0.85 7.79 -51.93 -0.40 0.45 16 28 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.07 1.09 8.10 -51.93 -0.42 0.67 16 30 H 0.06 1.03 8.10 -51.93 -0.42 0.61 16 31 H 0.09 1.49 7.40 -51.93 -0.38 1.11 16 32 H 0.10 1.98 8.00 -51.93 -0.42 1.57 16 33 H 0.04 0.96 6.44 -51.93 -0.33 0.63 16 34 H 0.04 0.84 7.89 -51.93 -0.41 0.43 16 35 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 36 H 0.10 1.67 7.89 -51.93 -0.41 1.26 16 37 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 38 H 0.15 2.82 8.06 -52.49 -0.42 2.39 16 39 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 40 H 0.19 2.32 8.06 -52.48 -0.42 1.90 16 LS Contribution 345.76 15.07 5.21 5.21 Total: -1.00 -29.37 345.76 -7.04 -36.41 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: -6.07 Total: 5.83 kcal Atomic # 6 Polarization: -9.30 SS G_CDS: -1.61 Total: -10.91 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.31 Total: -35.96 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.15 Total: -16.09 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.37 -7.04 -36.41 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267363031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.315 kcal (2) G-P(sol) polarization free energy of solvation -29.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds