Wall clock time and date at job start Mon Mar 30 2020 01:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50704 * 119.99450 * 2 1 4 4 C 1.53005 * 109.46857 * 125.00188 * 3 2 1 5 5 C 1.52997 * 109.46963 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.47283 * 179.97438 * 5 4 3 7 7 O 1.21282 * 119.99548 * 0.02562 * 6 5 4 8 8 N 1.34773 * 119.99759 * 180.02562 * 6 5 4 9 9 C 1.46493 * 120.00646 * 0.02562 * 8 6 5 10 10 C 1.50695 * 109.47443 * 270.00265 * 9 8 6 11 11 H 1.08001 * 120.00056 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00480 * 179.97438 * 10 9 8 13 13 N 1.31517 * 119.99528 * 359.97438 * 12 10 9 14 14 Si 1.86797 * 120.00487 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46990 * 59.99741 * 14 12 10 16 16 H 1.48497 * 109.47011 * 179.97438 * 14 12 10 17 17 H 1.48503 * 109.47086 * 300.00255 * 14 12 10 18 18 C 1.46505 * 119.99455 * 180.02562 * 8 6 5 19 19 C 1.50703 * 109.47064 * 90.00114 * 18 8 6 20 20 C 1.34515 * 125.79060 * 89.99944 * 19 18 8 21 21 C 1.41380 * 106.83832 * 179.97438 * 20 19 18 22 22 C 1.34506 * 106.84493 * 359.97438 * 21 20 19 23 23 O 1.34306 * 125.78568 * 269.69282 * 19 18 8 24 24 H 1.07997 * 120.00346 * 0.02562 * 1 2 3 25 25 H 1.08005 * 119.99882 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00346 * 179.97438 * 2 1 3 27 27 H 1.08992 * 109.47424 * 5.00170 * 3 2 1 28 28 H 1.09002 * 109.46931 * 244.99684 * 3 2 1 29 29 H 1.09000 * 109.47431 * 59.99958 * 4 3 2 30 30 H 1.09002 * 109.46939 * 299.99491 * 4 3 2 31 31 H 1.09006 * 109.47088 * 60.00115 * 5 4 3 32 32 H 1.08999 * 109.47644 * 300.00395 * 5 4 3 33 33 H 1.09006 * 109.46911 * 30.00087 * 9 8 6 34 34 H 1.08996 * 109.47170 * 149.99599 * 9 8 6 35 35 H 0.97003 * 119.99687 * 180.02562 * 13 12 10 36 36 H 1.09002 * 109.47068 * 210.00083 * 18 8 6 37 37 H 1.09001 * 109.47372 * 330.00170 * 18 8 6 38 38 H 1.07996 * 126.58016 * 0.03378 * 20 19 18 39 39 H 1.08006 * 126.57610 * 179.97438 * 21 20 19 40 40 H 1.08005 * 125.79499 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 3.0350 1.3332 1.1817 5 6 3.8003 2.6580 1.1813 6 6 4.7568 2.6859 2.3455 7 8 4.8204 1.7391 3.1008 8 7 5.5415 3.7629 2.5473 9 6 5.4642 4.9068 1.6353 10 6 6.4457 4.7173 0.5076 11 1 7.0654 3.8334 0.4738 12 6 6.5526 5.6723 -0.4812 13 7 5.7976 6.7484 -0.4403 14 14 7.7697 5.4378 -1.8787 15 1 7.4413 4.1920 -2.6172 16 1 7.6903 6.5967 -2.8038 17 1 9.1445 5.3379 -1.3262 18 6 6.4717 3.7898 3.6788 19 6 7.7988 3.2172 3.2517 20 6 8.8250 3.9137 2.7310 21 6 9.8623 2.9870 2.4779 22 6 9.4082 1.7798 2.8597 23 8 8.1594 1.9260 3.3319 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5400 -0.9354 -0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3585 2.1316 0.0896 28 1 2.6212 1.4027 -0.9314 29 1 3.7400 0.5067 1.0921 30 1 2.4771 1.2357 2.1130 31 1 3.0955 3.4848 1.2707 32 1 4.3581 2.7552 0.2499 33 1 4.4550 4.9808 1.2300 34 1 5.7059 5.8208 2.1776 35 1 5.8726 7.4201 -1.1361 36 1 6.6100 4.8186 4.0112 37 1 6.0659 3.1950 4.4971 38 1 8.8518 4.9769 2.5432 39 1 10.8332 3.2063 2.0586 40 1 9.9562 0.8510 2.8003 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267363031.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:42 Heat of formation + Delta-G solvation = -30.522584 kcal Electronic energy + Delta-G solvation = -21643.428238 eV Core-core repulsion = 18424.486338 eV Total energy + Delta-G solvation = -3218.941900 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.37644 -40.75772 -37.14021 -36.66311 -34.62552 -33.81413 -33.34781 -31.64316 -29.16446 -28.43061 -26.36433 -24.85494 -22.90805 -22.54999 -21.42414 -20.72011 -19.83475 -18.72247 -18.21407 -17.83790 -17.17259 -16.79242 -16.49873 -16.33807 -15.83866 -15.52872 -14.72529 -14.58399 -14.26015 -14.10817 -13.93740 -13.65974 -13.53139 -13.37095 -13.18083 -12.93071 -12.71306 -12.68206 -12.44227 -12.36148 -12.04403 -11.76587 -11.67370 -11.60001 -10.81207 -10.71379 -10.52765 -10.16700 -9.65970 -9.26847 -8.16845 -6.26775 0.82384 1.40830 1.42966 1.44797 1.49330 1.67844 1.81461 2.27714 2.38186 2.53237 3.14990 3.72585 3.91854 3.93817 4.07887 4.16790 4.23726 4.36062 4.42192 4.47047 4.52775 4.66921 4.68283 4.83743 4.89011 4.99368 5.00791 5.09657 5.12030 5.22481 5.26972 5.29680 5.41501 5.66826 5.71151 5.79393 5.81444 5.94524 6.11085 6.31590 6.55939 6.84902 7.30070 7.45007 8.89115 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011735 B = 0.006402 C = 0.004802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2385.456357 B = 4372.569257 C = 5829.299058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.092 4.092 4 C -0.086 4.086 5 C -0.128 4.128 6 C 0.511 3.489 7 O -0.589 6.589 8 N -0.597 5.597 9 C 0.250 3.750 10 C -0.525 4.525 11 H 0.045 0.955 12 C 0.029 3.971 13 N -0.918 5.918 14 Si 0.941 3.059 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.274 1.274 18 C 0.195 3.805 19 C -0.039 4.039 20 C -0.190 4.190 21 C -0.229 4.229 22 C -0.049 4.049 23 O -0.193 6.193 24 H 0.101 0.899 25 H 0.110 0.890 26 H 0.110 0.890 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.100 0.900 32 H 0.090 0.910 33 H 0.038 0.962 34 H 0.028 0.972 35 H 0.266 0.734 36 H 0.121 0.879 37 H 0.088 0.912 38 H 0.142 0.858 39 H 0.165 0.835 40 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.491 -7.373 2.799 8.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.181 4.181 3 C -0.129 4.129 4 C -0.124 4.124 5 C -0.168 4.168 6 C 0.301 3.699 7 O -0.471 6.471 8 N -0.327 5.327 9 C 0.130 3.870 10 C -0.563 4.563 11 H 0.064 0.936 12 C -0.171 4.171 13 N -0.558 5.558 14 Si 0.768 3.232 15 H -0.202 1.202 16 H -0.208 1.208 17 H -0.200 1.200 18 C 0.072 3.928 19 C -0.090 4.090 20 C -0.211 4.211 21 C -0.248 4.248 22 C -0.116 4.116 23 O -0.089 6.089 24 H 0.119 0.881 25 H 0.128 0.872 26 H 0.128 0.872 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.118 0.882 32 H 0.108 0.892 33 H 0.056 0.944 34 H 0.046 0.954 35 H 0.075 0.925 36 H 0.139 0.861 37 H 0.107 0.893 38 H 0.160 0.840 39 H 0.182 0.818 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.703 -7.873 3.210 8.671 hybrid contribution 1.093 0.409 -1.047 1.568 sum -0.611 -7.464 2.163 7.795 Atomic orbital electron populations 1.24014 0.95604 1.02659 1.00760 1.23011 0.96508 0.98292 1.00270 1.20758 0.97950 0.96168 0.98035 1.21169 0.97251 0.95224 0.98725 1.21635 0.97759 1.00618 0.96779 1.21137 0.81295 0.81193 0.86254 1.90585 1.71184 1.36167 1.49184 1.48346 1.36992 1.18740 1.28612 1.19215 0.97403 0.82901 0.87486 1.21471 1.21394 1.05402 1.08081 0.93636 1.25436 0.97154 0.94826 0.99718 1.69976 1.40392 1.10114 1.35321 0.85863 0.80143 0.77472 0.79761 1.20245 1.20790 1.19978 1.19802 0.82537 1.01481 0.88963 1.23013 0.98386 0.81161 1.06394 1.21704 0.94019 1.01300 1.04035 1.22105 1.01974 0.92957 1.07744 1.24732 0.83407 1.01498 1.01986 1.84053 1.30634 1.28682 1.65552 0.88104 0.87214 0.87223 0.90716 0.90929 0.92857 0.92054 0.88205 0.89157 0.94441 0.95417 0.92478 0.86111 0.89350 0.84029 0.81759 0.74786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.81 14.32 67.78 0.97 -2.84 16 2 C -0.16 -3.71 9.52 25.65 0.24 -3.47 16 3 C -0.09 -2.35 5.66 29.85 0.17 -2.18 16 4 C -0.09 -2.66 4.49 30.59 0.14 -2.52 16 5 C -0.13 -4.60 4.25 29.85 0.13 -4.47 16 6 C 0.51 21.32 7.67 87.66 0.67 21.99 16 7 O -0.59 -26.86 15.56 -3.04 -0.05 -26.91 16 8 N -0.60 -24.81 2.44 -830.50 -2.03 -26.83 16 9 C 0.25 11.41 5.01 85.63 0.43 11.83 16 10 C -0.52 -26.33 9.04 25.60 0.23 -26.10 16 11 H 0.05 2.42 7.65 -2.91 -0.02 2.40 16 12 C 0.03 1.48 5.46 84.65 0.46 1.94 16 13 N -0.92 -48.99 13.29 21.45 0.28 -48.71 16 14 Si 0.94 41.62 29.54 68.60 2.03 43.64 16 15 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 16 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.20 7.31 5.98 85.63 0.51 7.83 16 19 C -0.04 -1.52 6.90 24.83 0.17 -1.34 16 20 C -0.19 -7.19 10.40 22.19 0.23 -6.96 16 21 C -0.23 -7.44 10.91 22.19 0.24 -7.20 16 22 C -0.05 -1.52 12.09 66.97 0.81 -0.71 16 23 O -0.19 -7.50 10.65 -2.58 -0.03 -7.53 16 24 H 0.10 1.86 7.84 -2.91 -0.02 1.83 16 25 H 0.11 1.78 8.06 -2.91 -0.02 1.75 16 26 H 0.11 2.39 8.06 -2.91 -0.02 2.36 16 27 H 0.07 1.79 7.79 -2.39 -0.02 1.77 16 28 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.05 1.77 8.10 -2.39 -0.02 1.75 16 30 H 0.06 1.94 8.10 -2.39 -0.02 1.92 16 31 H 0.10 3.32 7.40 -2.38 -0.02 3.31 16 32 H 0.09 3.49 8.00 -2.39 -0.02 3.47 16 33 H 0.04 1.74 6.44 -2.38 -0.02 1.73 16 34 H 0.03 1.31 7.89 -2.39 -0.02 1.29 16 35 H 0.27 13.63 8.31 -92.71 -0.77 12.86 16 36 H 0.12 3.94 7.89 -2.39 -0.02 3.92 16 37 H 0.09 3.23 7.42 -2.39 -0.02 3.21 16 38 H 0.14 5.42 8.06 -2.91 -0.02 5.40 16 39 H 0.16 4.39 8.06 -2.91 -0.02 4.36 16 40 H 0.24 4.85 8.06 -2.91 -0.02 4.83 16 Total: -1.00 -61.46 345.76 6.62 -54.84 By element: Atomic # 1 Polarization: 24.70 SS G_CDS: 1.00 Total: 25.70 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.41 Total: -14.20 kcal Atomic # 7 Polarization: -73.80 SS G_CDS: -1.74 Total: -75.54 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.07 Total: -34.44 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.64 kcal Total: -61.46 6.62 -54.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267363031.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.318 kcal (2) G-P(sol) polarization free energy of solvation -61.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds