Wall clock time and date at job start Mon Mar 30 2020 01:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47649 * 2 1 4 4 C 1.52996 * 109.47410 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47349 * 304.99953 * 4 3 2 6 6 O 1.42902 * 109.47260 * 65.00111 * 4 3 2 7 7 C 1.53005 * 109.47319 * 184.99951 * 4 3 2 8 8 N 1.46497 * 109.47236 * 180.02562 * 7 4 3 9 9 C 1.34779 * 119.99964 * 180.02562 * 8 7 4 10 10 O 1.21548 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99878 * 179.97438 * 9 8 7 12 12 C 1.39916 * 120.02710 * 359.72368 * 11 9 8 13 13 C 1.38324 * 120.36096 * 179.79008 * 12 11 9 14 14 C 1.37754 * 120.40882 * 0.46264 * 13 12 11 15 15 C 1.40746 * 120.04365 * 359.78927 * 14 13 12 16 16 C 1.41435 * 120.18348 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99776 * 334.93914 * 16 15 14 18 18 C 1.39934 * 120.00257 * 154.92702 * 16 15 14 19 19 N 1.30829 * 119.99997 * 342.59321 * 18 16 15 20 20 Si 1.86797 * 120.00138 * 162.58919 * 18 16 15 21 21 H 1.48498 * 109.46946 * 90.00085 * 20 18 16 22 22 H 1.48498 * 109.47082 * 210.00497 * 20 18 16 23 23 H 1.48498 * 109.47035 * 330.00296 * 20 18 16 24 24 C 1.38993 * 120.02437 * 179.97438 * 11 9 8 25 25 H 1.08991 * 109.47217 * 59.99718 * 1 2 3 26 26 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46610 * 300.00106 * 1 2 3 28 28 H 1.09006 * 109.46795 * 239.99379 * 2 1 3 29 29 H 1.09000 * 109.47193 * 120.00411 * 2 1 3 30 30 H 1.09004 * 109.46801 * 59.99950 * 3 2 1 31 31 H 1.09000 * 109.47159 * 300.00432 * 3 2 1 32 32 H 0.96701 * 113.99913 * 59.99340 * 6 4 3 33 33 H 1.09006 * 109.46994 * 300.00287 * 7 4 3 34 34 H 1.09003 * 109.46693 * 59.99616 * 7 4 3 35 35 H 0.97004 * 119.99787 * 359.97438 * 8 7 4 36 36 H 1.08000 * 119.82041 * 359.97438 * 12 11 9 37 37 H 1.07998 * 119.79546 * 180.23356 * 13 12 11 38 38 H 1.08006 * 119.98085 * 179.76779 * 14 13 12 39 39 H 0.97000 * 120.00366 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.20010 * 359.96086 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8528 0.8409 6 8 4.0459 0.8731 -1.2220 7 6 4.0803 2.8793 0.1251 8 7 5.5452 2.8793 0.1238 9 6 6.2192 4.0420 0.2258 10 8 5.6116 5.0906 0.3184 11 6 7.6981 4.0419 0.2252 12 6 8.3981 2.8346 0.1245 13 6 9.7813 2.8268 0.1188 14 6 10.4856 4.0062 0.2218 15 6 9.7988 5.2300 0.3292 16 6 10.5190 6.4426 0.4356 17 1 11.5232 6.4412 0.8331 18 6 9.9306 7.6442 0.0255 19 7 8.8810 7.6256 -0.7552 20 14 10.6437 9.2748 0.5930 21 1 11.6679 9.7325 -0.3800 22 1 9.5591 10.2851 0.6822 23 1 11.2711 9.1029 1.9279 24 6 8.3937 5.2406 0.3298 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5140 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.7602 1.3476 -2.0146 33 1 3.7165 3.4689 -0.7165 34 1 3.7173 3.3135 1.0567 35 1 6.0302 2.0423 0.0503 36 1 7.8555 1.9039 0.0478 37 1 10.3124 1.8900 0.0369 38 1 11.5656 3.9918 0.2204 39 1 8.4729 8.4585 -1.0392 40 1 7.8574 6.1746 0.4112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268565267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:49 Heat of formation + Delta-G solvation = -94.726021 kcal Electronic energy + Delta-G solvation = -20733.670354 eV Core-core repulsion = 17511.944384 eV Total energy + Delta-G solvation = -3221.725970 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.39199 -38.11855 -36.89667 -34.41543 -33.97263 -33.60875 -30.64611 -29.56306 -29.36765 -26.28958 -25.19898 -22.75252 -21.74926 -21.42291 -20.87998 -19.43787 -17.78407 -16.83358 -16.42379 -15.94206 -15.38526 -14.97965 -14.89827 -14.61434 -14.08133 -14.00219 -13.75983 -13.43184 -13.14493 -12.62444 -12.46885 -12.45313 -12.08062 -11.97797 -11.63330 -11.53164 -11.14129 -11.06294 -10.97685 -10.91097 -10.73573 -10.48631 -10.15428 -10.02572 -9.67250 -9.20176 -9.00488 -8.66036 -7.61229 -7.50153 -6.78687 -4.40115 2.22519 2.82529 3.08300 3.11326 3.17252 3.59367 3.87617 3.93300 4.27956 4.46595 4.65535 4.70722 4.73626 4.99942 5.03571 5.29563 5.37430 5.55378 5.56347 5.61607 5.63496 5.78734 5.81435 5.92348 6.04917 6.06556 6.12048 6.30692 6.73268 6.85705 7.00089 7.03395 7.22558 7.39775 7.46836 7.72098 7.77809 7.94227 8.11824 8.20935 8.51861 8.81581 8.84834 8.96516 10.16208 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003371 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.997422 B = 8302.934348 C = 9022.167761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.149 4.149 4 C 0.096 3.904 5 H 0.104 0.896 6 O -0.557 6.557 7 C 0.089 3.911 8 N -0.732 5.732 9 C 0.563 3.437 10 O -0.549 6.549 11 C -0.128 4.128 12 C -0.216 4.216 13 C -0.098 4.098 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.092 4.092 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.376 0.624 33 H 0.065 0.935 34 H 0.071 0.929 35 H 0.403 0.597 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.284 0.716 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.650 -10.590 0.464 15.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.188 4.188 4 C 0.036 3.964 5 H 0.122 0.878 6 O -0.363 6.363 7 C -0.035 4.035 8 N -0.386 5.386 9 C 0.353 3.647 10 O -0.428 6.428 11 C -0.132 4.132 12 C -0.236 4.236 13 C -0.117 4.117 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.409 5.409 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.112 4.112 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.224 0.776 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.240 0.760 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.095 0.905 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.998 -10.091 0.807 15.698 hybrid contribution 0.164 0.774 -0.263 0.834 sum -11.834 -9.317 0.543 15.071 Atomic orbital electron populations 1.21789 0.95978 1.01557 1.01748 1.21451 0.95489 0.96205 1.02650 1.22253 0.95242 0.97984 1.03271 1.22212 0.92963 0.93003 0.88214 0.87820 1.86577 1.77140 1.56941 1.15609 1.21946 0.82114 0.96811 1.02673 1.45837 1.05794 1.10053 1.76935 1.18874 0.88512 0.82618 0.74649 1.90689 1.70468 1.31576 1.50040 1.19465 0.90013 0.95374 1.08306 1.20368 0.94102 0.94838 1.14271 1.20443 0.93641 0.96678 1.00907 1.21107 0.97945 0.92814 1.11232 1.17603 0.91534 0.92548 0.88760 1.19568 1.01429 0.90786 1.37161 0.90101 1.25963 0.94299 1.01604 0.92732 1.69791 1.17923 1.30210 1.22976 0.86288 0.79405 0.80584 0.80353 1.19449 1.19977 1.18392 1.21633 0.94127 0.96151 0.99325 0.92804 0.92796 0.92820 0.91280 0.92019 0.90700 0.91282 0.77623 0.91684 0.91117 0.76042 0.89121 0.88868 0.88606 0.90480 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.12 -0.92 5.83 -26.73 -0.16 -1.08 16 3 C -0.15 -1.20 4.89 -26.74 -0.13 -1.33 16 4 C 0.10 0.95 3.05 -26.73 -0.08 0.87 16 5 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 6 O -0.56 -5.90 12.62 -35.23 -0.44 -6.35 16 7 C 0.09 1.19 5.34 -4.04 -0.02 1.17 16 8 N -0.73 -12.28 5.40 -61.23 -0.33 -12.61 16 9 C 0.56 12.51 7.77 -12.31 -0.10 12.41 16 10 O -0.55 -13.94 16.33 5.32 0.09 -13.85 16 11 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 12 C -0.22 -4.63 9.55 -38.92 -0.37 -5.00 16 13 C -0.10 -2.13 10.01 -39.73 -0.40 -2.53 16 14 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 15 C 0.10 2.62 5.57 -106.87 -0.59 2.03 16 16 C -0.46 -12.20 9.05 -37.73 -0.34 -12.54 16 17 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.78 -20.98 10.97 55.55 0.61 -20.37 16 20 Si 0.91 18.90 29.59 -169.99 -5.03 13.87 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 25 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.05 0.35 8.14 -51.92 -0.42 -0.07 16 28 H 0.07 0.57 7.82 -51.93 -0.41 0.16 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.38 3.02 9.05 45.56 0.41 3.44 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.40 6.18 6.36 -40.82 -0.26 5.92 16 36 H 0.09 1.64 6.38 -52.49 -0.33 1.31 16 37 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.14 8.06 -52.48 -0.42 1.71 16 39 H 0.28 6.97 8.30 -40.82 -0.34 6.64 16 40 H 0.13 3.88 5.76 -52.48 -0.30 3.58 16 LS Contribution 337.20 15.07 5.08 5.08 Total: -1.00 -30.61 337.20 -8.34 -38.95 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -5.09 Total: 12.14 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.22 Total: -16.87 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.28 Total: -32.98 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.36 Total: -20.20 kcal Atomic # 14 Polarization: 18.90 SS G_CDS: -5.03 Total: 13.87 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.61 -8.34 -38.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268565267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.774 kcal (2) G-P(sol) polarization free energy of solvation -30.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds