Wall clock time and date at job start Mon Mar 30 2020 01:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47649 * 2 1 4 4 C 1.52996 * 109.47410 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47349 * 304.99953 * 4 3 2 6 6 O 1.42902 * 109.47260 * 65.00111 * 4 3 2 7 7 C 1.53005 * 109.47319 * 184.99951 * 4 3 2 8 8 N 1.46497 * 109.47236 * 180.02562 * 7 4 3 9 9 C 1.34779 * 119.99964 * 180.02562 * 8 7 4 10 10 O 1.21548 * 120.00130 * 359.97438 * 9 8 7 11 11 C 1.47883 * 119.99878 * 179.97438 * 9 8 7 12 12 C 1.39916 * 120.02710 * 359.72368 * 11 9 8 13 13 C 1.38324 * 120.36096 * 179.79008 * 12 11 9 14 14 C 1.37754 * 120.40882 * 0.46264 * 13 12 11 15 15 C 1.40746 * 120.04365 * 359.78927 * 14 13 12 16 16 C 1.41435 * 120.18348 * 179.97438 * 15 14 13 17 17 H 1.07999 * 119.99776 * 334.93914 * 16 15 14 18 18 C 1.39934 * 120.00257 * 154.92702 * 16 15 14 19 19 N 1.30829 * 119.99997 * 342.59321 * 18 16 15 20 20 Si 1.86797 * 120.00138 * 162.58919 * 18 16 15 21 21 H 1.48498 * 109.46946 * 90.00085 * 20 18 16 22 22 H 1.48498 * 109.47082 * 210.00497 * 20 18 16 23 23 H 1.48498 * 109.47035 * 330.00296 * 20 18 16 24 24 C 1.38993 * 120.02437 * 179.97438 * 11 9 8 25 25 H 1.08991 * 109.47217 * 59.99718 * 1 2 3 26 26 H 1.08997 * 109.47444 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46610 * 300.00106 * 1 2 3 28 28 H 1.09006 * 109.46795 * 239.99379 * 2 1 3 29 29 H 1.09000 * 109.47193 * 120.00411 * 2 1 3 30 30 H 1.09004 * 109.46801 * 59.99950 * 3 2 1 31 31 H 1.09000 * 109.47159 * 300.00432 * 3 2 1 32 32 H 0.96701 * 113.99913 * 59.99340 * 6 4 3 33 33 H 1.09006 * 109.46994 * 300.00287 * 7 4 3 34 34 H 1.09003 * 109.46693 * 59.99616 * 7 4 3 35 35 H 0.97004 * 119.99787 * 359.97438 * 8 7 4 36 36 H 1.08000 * 119.82041 * 359.97438 * 12 11 9 37 37 H 1.07998 * 119.79546 * 180.23356 * 13 12 11 38 38 H 1.08006 * 119.98085 * 179.76779 * 14 13 12 39 39 H 0.97000 * 120.00366 * 179.97438 * 19 18 16 40 40 H 1.08005 * 120.20010 * 359.96086 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4423 -0.0006 5 1 3.9338 0.8528 0.8409 6 8 4.0459 0.8731 -1.2220 7 6 4.0803 2.8793 0.1251 8 7 5.5452 2.8793 0.1238 9 6 6.2192 4.0420 0.2258 10 8 5.6116 5.0906 0.3184 11 6 7.6981 4.0419 0.2252 12 6 8.3981 2.8346 0.1245 13 6 9.7813 2.8268 0.1188 14 6 10.4856 4.0062 0.2218 15 6 9.7988 5.2300 0.3292 16 6 10.5190 6.4426 0.4356 17 1 11.5232 6.4412 0.8331 18 6 9.9306 7.6442 0.0255 19 7 8.8810 7.6256 -0.7552 20 14 10.6437 9.2748 0.5930 21 1 11.6679 9.7325 -0.3800 22 1 9.5591 10.2851 0.6822 23 1 11.2711 9.1029 1.9279 24 6 8.3937 5.2406 0.3298 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 1.8933 -0.5140 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.6768 1.9562 0.8900 31 1 1.6768 1.9563 -0.8899 32 1 3.7602 1.3476 -2.0146 33 1 3.7165 3.4689 -0.7165 34 1 3.7173 3.3135 1.0567 35 1 6.0302 2.0423 0.0503 36 1 7.8555 1.9039 0.0478 37 1 10.3124 1.8900 0.0369 38 1 11.5656 3.9918 0.2204 39 1 8.4729 8.4585 -1.0392 40 1 7.8574 6.1746 0.4112 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268565267.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:48 Heat of formation + Delta-G solvation = -115.638578 kcal Electronic energy + Delta-G solvation = -20734.577190 eV Core-core repulsion = 17511.944384 eV Total energy + Delta-G solvation = -3222.632807 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97847 -39.26345 -38.59835 -35.71025 -35.29812 -34.97412 -32.26657 -31.30147 -30.63204 -27.51337 -26.89382 -24.17460 -22.98423 -22.63144 -22.15559 -21.09666 -19.54137 -18.18757 -17.41778 -17.28485 -17.02979 -16.55015 -16.26428 -16.00020 -15.38988 -15.15552 -15.09722 -14.79703 -14.41934 -14.27494 -14.08601 -13.66092 -13.41447 -12.95049 -12.78267 -12.74503 -12.66255 -12.54594 -12.23730 -12.17706 -11.92104 -11.70522 -11.51816 -11.50401 -11.10391 -11.06842 -10.68376 -10.17301 -9.47325 -9.39127 -8.66859 -6.38692 0.36988 1.00224 1.36089 1.46111 1.52499 2.08464 2.19011 2.21918 2.78368 3.46198 3.60893 3.69337 3.92211 4.03705 4.09775 4.25780 4.33666 4.42376 4.58883 4.61816 4.65592 4.73468 4.90782 4.93837 4.99765 5.07796 5.08478 5.18429 5.26647 5.30702 5.38930 5.44312 5.49536 5.51791 5.85970 5.92159 6.04563 6.27915 6.50103 6.66745 6.77449 6.87414 6.93949 7.29579 8.30177 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030762 B = 0.003371 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.997422 B = 8302.934348 C = 9022.167761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.144 4.144 4 C 0.110 3.890 5 H 0.110 0.890 6 O -0.567 6.567 7 C 0.085 3.915 8 N -0.708 5.708 9 C 0.558 3.442 10 O -0.591 6.591 11 C -0.140 4.140 12 C -0.197 4.197 13 C -0.096 4.096 14 C -0.216 4.216 15 C 0.066 3.934 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.257 1.257 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.131 4.131 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.387 0.613 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.413 0.587 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.899 -12.818 0.567 17.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.182 4.182 4 C 0.051 3.949 5 H 0.128 0.872 6 O -0.374 6.374 7 C -0.039 4.039 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.473 6.473 11 C -0.143 4.143 12 C -0.217 4.217 13 C -0.114 4.114 14 C -0.236 4.236 15 C 0.064 3.936 16 C -0.527 4.527 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.181 1.181 22 H -0.197 1.197 23 H -0.178 1.178 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.098 0.902 31 H 0.093 0.907 32 H 0.237 0.763 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.252 0.748 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.255 -12.386 0.897 17.447 hybrid contribution 0.175 1.238 -0.321 1.291 sum -12.080 -11.148 0.576 16.448 Atomic orbital electron populations 1.21783 0.95322 1.01985 1.01942 1.21419 0.96037 0.95604 1.02454 1.22210 0.93582 0.98573 1.03856 1.22116 0.94080 0.90370 0.88379 0.87242 1.86554 1.77462 1.57214 1.16205 1.22233 0.79673 0.99480 1.02491 1.45656 1.07354 1.08609 1.74474 1.18755 0.88100 0.83496 0.74847 1.90665 1.70978 1.33408 1.52260 1.19788 0.91432 0.95497 1.07581 1.20843 0.94475 0.95317 1.11025 1.20930 0.93891 0.97594 0.98989 1.21419 0.98899 0.92857 1.10444 1.17963 0.91822 0.94029 0.89802 1.19855 1.02029 0.91899 1.38886 0.89738 1.26876 0.94442 1.05162 0.92165 1.69892 1.19647 1.31123 1.24543 0.85186 0.78713 0.75674 0.80071 1.18115 1.19723 1.17838 1.21445 0.94599 0.96197 1.02927 0.92653 0.92299 0.92613 0.91740 0.91951 0.90237 0.90698 0.76337 0.92027 0.91313 0.74830 0.84842 0.84357 0.87254 0.90311 0.88334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.52 5.83 30.59 0.18 -1.34 16 3 C -0.14 -1.98 4.89 30.59 0.15 -1.83 16 4 C 0.11 1.92 3.05 30.59 0.09 2.01 16 5 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 6 O -0.57 -10.42 12.62 -148.98 -1.88 -12.30 16 7 C 0.09 2.14 5.34 86.38 0.46 2.60 16 8 N -0.71 -22.58 5.40 -465.92 -2.51 -25.10 16 9 C 0.56 24.92 7.77 86.80 0.67 25.59 16 10 O -0.59 -31.06 16.33 -3.87 -0.06 -31.12 16 11 C -0.14 -6.74 5.87 -20.14 -0.12 -6.86 16 12 C -0.20 -7.93 9.55 22.70 0.22 -7.71 16 13 C -0.10 -3.88 10.01 22.18 0.22 -3.66 16 14 C -0.22 -10.25 9.78 22.77 0.22 -10.03 16 15 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 16 C -0.50 -27.38 9.05 23.47 0.21 -27.17 16 17 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 18 C 0.03 1.50 5.14 85.25 0.44 1.93 16 19 N -0.83 -46.63 10.97 21.82 0.24 -46.39 16 20 Si 0.98 39.94 29.59 68.60 2.03 41.97 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 22 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 23 H -0.25 -10.00 7.11 99.48 0.71 -9.29 16 24 C -0.13 -7.40 8.23 23.01 0.19 -7.21 16 25 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.91 7.82 -2.38 -0.02 0.89 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.39 5.25 9.05 -74.06 -0.67 4.58 16 33 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.41 11.37 6.36 -92.71 -0.59 10.78 16 36 H 0.13 4.18 6.38 -2.91 -0.02 4.17 16 37 H 0.14 4.36 8.06 -2.91 -0.02 4.34 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.29 14.87 8.30 -92.71 -0.77 14.10 16 40 H 0.10 6.19 5.76 -2.91 -0.02 6.17 16 Total: -1.00 -69.90 337.20 1.14 -68.76 By element: Atomic # 1 Polarization: 35.57 SS G_CDS: -0.21 Total: 35.36 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 3.54 Total: -31.18 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -2.28 Total: -71.49 kcal Atomic # 8 Polarization: -41.48 SS G_CDS: -1.94 Total: -43.42 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -69.90 1.14 -68.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268565267.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.877 kcal (2) G-P(sol) polarization free energy of solvation -69.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds