Wall clock time and date at job start Mon Mar 30 2020 01:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.52994 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47195 * 54.99554 * 4 3 2 6 6 O 1.42903 * 109.47148 * 294.99795 * 4 3 2 7 7 C 1.52997 * 109.47421 * 174.99994 * 4 3 2 8 8 N 1.46498 * 109.47341 * 184.99954 * 7 4 3 9 9 C 1.34773 * 120.00157 * 179.97438 * 8 7 4 10 10 O 1.21552 * 119.99983 * 359.97438 * 9 8 7 11 11 C 1.47891 * 120.00333 * 179.97438 * 9 8 7 12 12 C 1.39925 * 120.02080 * 359.72389 * 11 9 8 13 13 C 1.38326 * 120.35579 * 179.78100 * 12 11 9 14 14 C 1.37759 * 120.41102 * 0.47768 * 13 12 11 15 15 C 1.40743 * 120.03741 * 359.78470 * 14 13 12 16 16 C 1.41446 * 120.17651 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99588 * 334.92687 * 16 15 14 18 18 C 1.39935 * 120.00079 * 154.92112 * 16 15 14 19 19 N 1.30829 * 120.00120 * 342.59123 * 18 16 15 20 20 Si 1.86805 * 119.99737 * 162.58893 * 18 16 15 21 21 H 1.48501 * 109.46909 * 60.00495 * 20 18 16 22 22 H 1.48503 * 109.46745 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47253 * 300.00464 * 20 18 16 24 24 C 1.38989 * 120.02842 * 180.02562 * 11 9 8 25 25 H 1.09007 * 109.47355 * 60.00223 * 1 2 3 26 26 H 1.09006 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47193 * 300.00344 * 1 2 3 28 28 H 1.08999 * 109.47193 * 239.99656 * 2 1 3 29 29 H 1.09005 * 109.46998 * 120.00179 * 2 1 3 30 30 H 1.08999 * 109.47215 * 59.99669 * 3 2 1 31 31 H 1.09011 * 109.46593 * 299.99698 * 3 2 1 32 32 H 0.96696 * 113.99918 * 300.00417 * 6 4 3 33 33 H 1.08999 * 109.46993 * 304.99654 * 7 4 3 34 34 H 1.08997 * 109.47305 * 64.99691 * 7 4 3 35 35 H 0.97004 * 119.99940 * 359.97438 * 8 7 4 36 36 H 1.07996 * 119.82246 * 0.02562 * 12 11 9 37 37 H 1.07994 * 119.79356 * 180.23376 * 13 12 11 38 38 H 1.07994 * 119.97722 * 179.75858 * 14 13 12 39 39 H 0.96996 * 119.99609 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.20256 * 359.95545 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0458 0.8733 1.2220 7 6 4.0801 2.8794 -0.1251 8 7 5.5401 2.8706 -0.2445 9 6 6.2132 4.0317 -0.3681 10 8 5.6087 5.0862 -0.3808 11 6 7.6872 4.0229 -0.4881 12 6 8.3840 2.8097 -0.4676 13 6 9.7623 2.7931 -0.5839 14 6 10.4656 3.9708 -0.7113 15 6 9.7823 5.2011 -0.7283 16 6 10.5014 6.4120 -0.8595 17 1 11.5346 6.4628 -0.5491 18 6 9.8742 7.5441 -1.3917 19 7 8.7646 7.4176 -2.0732 20 14 10.6213 9.2360 -1.1289 21 1 11.9847 9.2717 -1.7164 22 1 9.7717 10.2600 -1.7883 23 1 10.7017 9.5210 0.3263 24 6 8.3819 5.2200 -0.6150 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.7601 1.3478 2.0146 33 1 3.6459 3.3428 -1.0109 34 1 3.7913 3.4462 0.7600 35 1 6.0225 2.0291 -0.2347 36 1 7.8425 1.8810 -0.3644 37 1 10.2906 1.8513 -0.5707 38 1 11.5418 3.9499 -0.7976 39 1 8.3298 8.2024 -2.4417 40 1 7.8484 6.1591 -0.6271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268565270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:52 Heat of formation + Delta-G solvation = -94.742311 kcal Electronic energy + Delta-G solvation = -20721.911414 eV Core-core repulsion = 17500.184738 eV Total energy + Delta-G solvation = -3221.726677 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.39105 -38.12451 -36.89993 -34.41104 -33.99297 -33.61516 -30.64349 -29.55843 -29.36700 -26.29143 -25.19956 -22.75095 -21.77420 -21.42108 -20.88219 -19.43947 -17.78498 -16.83274 -16.42933 -15.93934 -15.38735 -15.01092 -14.87263 -14.61594 -14.07895 -14.01273 -13.75635 -13.43603 -13.14758 -12.61973 -12.47015 -12.46038 -12.08952 -11.96916 -11.62684 -11.53439 -11.14311 -11.06963 -10.99100 -10.91467 -10.72493 -10.49862 -10.16197 -10.02057 -9.67568 -9.20072 -9.00530 -8.66408 -7.61407 -7.50408 -6.78613 -4.40325 2.22383 2.83384 3.08030 3.09825 3.17574 3.59871 3.87489 3.93085 4.25586 4.46846 4.65501 4.70699 4.73551 4.99732 5.03609 5.29605 5.37221 5.55338 5.56222 5.61223 5.63889 5.78934 5.81035 5.92081 6.04658 6.06541 6.11813 6.30335 6.73134 6.85382 7.00026 7.03209 7.22535 7.39607 7.45933 7.71838 7.77498 7.93995 8.11309 8.20664 8.51644 8.81420 8.84688 8.96196 10.16312 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.003367 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.033383 B = 8312.817582 C = 9038.946865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.149 4.149 4 C 0.095 3.905 5 H 0.104 0.896 6 O -0.557 6.557 7 C 0.090 3.910 8 N -0.732 5.732 9 C 0.563 3.437 10 O -0.549 6.549 11 C -0.128 4.128 12 C -0.216 4.216 13 C -0.098 4.098 14 C -0.211 4.211 15 C 0.098 3.902 16 C -0.461 4.461 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.785 5.785 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.278 1.278 23 H -0.263 1.263 24 C -0.092 4.092 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.375 0.625 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.403 0.597 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.509 -10.301 3.288 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.187 4.187 4 C 0.036 3.964 5 H 0.122 0.878 6 O -0.363 6.363 7 C -0.035 4.035 8 N -0.386 5.386 9 C 0.354 3.646 10 O -0.428 6.428 11 C -0.132 4.132 12 C -0.236 4.236 13 C -0.117 4.117 14 C -0.231 4.231 15 C 0.096 3.904 16 C -0.490 4.490 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.409 5.409 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.112 4.112 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.223 0.777 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.239 0.761 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.866 -9.817 2.714 15.638 hybrid contribution 0.176 0.771 0.289 0.842 sum -11.690 -9.046 3.003 15.083 Atomic orbital electron populations 1.21789 0.95973 1.01560 1.01749 1.21452 0.95496 0.96201 1.02653 1.22255 0.95217 0.97994 1.03277 1.22216 0.92975 0.93030 0.88193 0.87772 1.86584 1.77148 1.56965 1.15573 1.21952 0.82224 0.96787 1.02518 1.45850 1.06294 1.09763 1.76729 1.18875 0.88424 0.82708 0.74639 1.90690 1.70401 1.31156 1.50514 1.19468 0.90131 0.95392 1.08168 1.20367 0.94215 0.94806 1.14206 1.20444 0.93693 0.96695 1.00830 1.21106 0.98191 0.92331 1.11475 1.17600 0.91604 0.92446 0.88776 1.19550 0.98951 0.93849 1.36652 0.90117 1.25964 0.94456 1.01551 0.92622 1.69784 1.15644 1.32688 1.22800 0.86322 0.79731 0.80584 0.79851 1.18971 1.20245 1.18729 1.21630 0.94328 0.96348 0.98913 0.92797 0.92794 0.92822 0.91998 0.91295 0.91297 0.90669 0.77707 0.91073 0.91692 0.76115 0.89136 0.88868 0.88603 0.90418 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.15 0.37 -0.67 16 2 C -0.12 -0.92 5.83 -26.73 -0.16 -1.08 16 3 C -0.15 -1.20 4.89 -26.73 -0.13 -1.33 16 4 C 0.10 0.95 3.00 -26.74 -0.08 0.87 16 5 H 0.10 1.05 8.14 -51.92 -0.42 0.63 16 6 O -0.56 -5.82 12.82 -35.23 -0.45 -6.27 16 7 C 0.09 1.20 5.31 -4.04 -0.02 1.18 16 8 N -0.73 -12.29 5.45 -61.24 -0.33 -12.62 16 9 C 0.56 12.51 7.77 -12.31 -0.10 12.42 16 10 O -0.55 -13.93 16.33 5.32 0.09 -13.84 16 11 C -0.13 -3.08 5.87 -105.04 -0.62 -3.70 16 12 C -0.22 -4.63 9.55 -38.92 -0.37 -5.01 16 13 C -0.10 -2.13 10.01 -39.72 -0.40 -2.53 16 14 C -0.21 -5.07 9.78 -38.81 -0.38 -5.45 16 15 C 0.10 2.63 5.57 -106.87 -0.59 2.03 16 16 C -0.46 -12.21 9.05 -37.73 -0.34 -12.56 16 17 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.78 -20.99 10.97 55.55 0.61 -20.38 16 20 Si 0.91 18.92 29.59 -169.99 -5.03 13.89 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.09 -2.49 8.23 -38.45 -0.32 -2.80 16 25 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.56 7.82 -51.93 -0.41 0.16 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.38 2.88 9.04 45.56 0.41 3.29 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.40 6.15 6.49 -40.82 -0.26 5.89 16 36 H 0.09 1.63 6.38 -52.49 -0.33 1.30 16 37 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.10 2.14 8.06 -52.49 -0.42 1.71 16 39 H 0.28 7.01 8.30 -40.82 -0.34 6.67 16 40 H 0.13 3.88 5.77 -52.48 -0.30 3.58 16 LS Contribution 337.50 15.07 5.09 5.09 Total: -1.00 -30.62 337.50 -8.35 -38.98 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.10 Total: 12.02 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -3.22 Total: -16.86 kcal Atomic # 7 Polarization: -33.27 SS G_CDS: 0.28 Total: -33.00 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.36 Total: -20.12 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.03 Total: 13.89 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.62 -8.35 -38.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268565270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.767 kcal (2) G-P(sol) polarization free energy of solvation -30.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds