Wall clock time and date at job start Mon Mar 30 2020 01:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47428 * 2 1 4 4 C 1.52994 * 109.47428 * 179.97438 * 3 2 1 5 5 H 1.09007 * 109.47195 * 54.99554 * 4 3 2 6 6 O 1.42903 * 109.47148 * 294.99795 * 4 3 2 7 7 C 1.52997 * 109.47421 * 174.99994 * 4 3 2 8 8 N 1.46498 * 109.47341 * 184.99954 * 7 4 3 9 9 C 1.34773 * 120.00157 * 179.97438 * 8 7 4 10 10 O 1.21552 * 119.99983 * 359.97438 * 9 8 7 11 11 C 1.47891 * 120.00333 * 179.97438 * 9 8 7 12 12 C 1.39925 * 120.02080 * 359.72389 * 11 9 8 13 13 C 1.38326 * 120.35579 * 179.78100 * 12 11 9 14 14 C 1.37759 * 120.41102 * 0.47768 * 13 12 11 15 15 C 1.40743 * 120.03741 * 359.78470 * 14 13 12 16 16 C 1.41446 * 120.17651 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99588 * 334.92687 * 16 15 14 18 18 C 1.39935 * 120.00079 * 154.92112 * 16 15 14 19 19 N 1.30829 * 120.00120 * 342.59123 * 18 16 15 20 20 Si 1.86805 * 119.99737 * 162.58893 * 18 16 15 21 21 H 1.48501 * 109.46909 * 60.00495 * 20 18 16 22 22 H 1.48503 * 109.46745 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47253 * 300.00464 * 20 18 16 24 24 C 1.38989 * 120.02842 * 180.02562 * 11 9 8 25 25 H 1.09007 * 109.47355 * 60.00223 * 1 2 3 26 26 H 1.09006 * 109.47485 * 180.02562 * 1 2 3 27 27 H 1.08999 * 109.47193 * 300.00344 * 1 2 3 28 28 H 1.08999 * 109.47193 * 239.99656 * 2 1 3 29 29 H 1.09005 * 109.46998 * 120.00179 * 2 1 3 30 30 H 1.08999 * 109.47215 * 59.99669 * 3 2 1 31 31 H 1.09011 * 109.46593 * 299.99698 * 3 2 1 32 32 H 0.96696 * 113.99918 * 300.00417 * 6 4 3 33 33 H 1.08999 * 109.46993 * 304.99654 * 7 4 3 34 34 H 1.08997 * 109.47305 * 64.99691 * 7 4 3 35 35 H 0.97004 * 119.99940 * 359.97438 * 8 7 4 36 36 H 1.07996 * 119.82246 * 0.02562 * 12 11 9 37 37 H 1.07994 * 119.79356 * 180.23376 * 13 12 11 38 38 H 1.07994 * 119.97722 * 179.75858 * 14 13 12 39 39 H 0.96996 * 119.99609 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.20256 * 359.95545 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4425 0.0006 5 1 3.9337 0.8528 -0.8409 6 8 4.0458 0.8733 1.2220 7 6 4.0801 2.8794 -0.1251 8 7 5.5401 2.8706 -0.2445 9 6 6.2132 4.0317 -0.3681 10 8 5.6087 5.0862 -0.3808 11 6 7.6872 4.0229 -0.4881 12 6 8.3840 2.8097 -0.4676 13 6 9.7623 2.7931 -0.5839 14 6 10.4656 3.9708 -0.7113 15 6 9.7823 5.2011 -0.7283 16 6 10.5014 6.4120 -0.8595 17 1 11.5346 6.4628 -0.5491 18 6 9.8742 7.5441 -1.3917 19 7 8.7646 7.4176 -2.0732 20 14 10.6213 9.2360 -1.1289 21 1 11.9847 9.2717 -1.7164 22 1 9.7717 10.2600 -1.7883 23 1 10.7017 9.5210 0.3263 24 6 8.3819 5.2200 -0.6150 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8901 32 1 3.7601 1.3478 2.0146 33 1 3.6459 3.3428 -1.0109 34 1 3.7913 3.4462 0.7600 35 1 6.0225 2.0291 -0.2347 36 1 7.8425 1.8810 -0.3644 37 1 10.2906 1.8513 -0.5707 38 1 11.5418 3.9499 -0.7976 39 1 8.3298 8.2024 -2.4417 40 1 7.8484 6.1591 -0.6271 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268565270.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:51 Heat of formation + Delta-G solvation = -115.739498 kcal Electronic energy + Delta-G solvation = -20722.821921 eV Core-core repulsion = 17500.184738 eV Total energy + Delta-G solvation = -3222.637183 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.97808 -39.26298 -38.60085 -35.71348 -35.30308 -34.98411 -32.26661 -31.30206 -30.62245 -27.51465 -26.89511 -24.17272 -22.99686 -22.64311 -22.15782 -21.09550 -19.54002 -18.18600 -17.40030 -17.30972 -17.02979 -16.54517 -16.26463 -16.00501 -15.39608 -15.14237 -15.10313 -14.79613 -14.41152 -14.27543 -14.09512 -13.66255 -13.41329 -12.95073 -12.81002 -12.74749 -12.65443 -12.53258 -12.24148 -12.17816 -11.91518 -11.70893 -11.51948 -11.50567 -11.10919 -11.07175 -10.67900 -10.17595 -9.47513 -9.39289 -8.66740 -6.38851 0.36878 1.00572 1.35976 1.47661 1.50495 2.08665 2.19142 2.21715 2.78245 3.45139 3.60818 3.69221 3.92448 4.03207 4.09344 4.25623 4.33491 4.42303 4.58609 4.61459 4.65605 4.73411 4.90611 4.93690 4.99584 5.07610 5.08351 5.18313 5.26475 5.30591 5.38545 5.44452 5.49400 5.51697 5.85796 5.91990 6.04419 6.27848 6.49735 6.66515 6.78622 6.87295 6.93871 7.29219 8.30158 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030493 B = 0.003367 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.033383 B = 8312.817582 C = 9038.946865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.144 4.144 4 C 0.110 3.890 5 H 0.108 0.892 6 O -0.567 6.567 7 C 0.086 3.914 8 N -0.709 5.709 9 C 0.558 3.442 10 O -0.591 6.591 11 C -0.140 4.140 12 C -0.197 4.197 13 C -0.096 4.096 14 C -0.216 4.216 15 C 0.066 3.934 16 C -0.498 4.498 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.984 3.016 21 H -0.252 1.252 22 H -0.272 1.272 23 H -0.260 1.260 24 C -0.131 4.131 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.388 0.612 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.413 0.587 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.109 0.891 39 H 0.287 0.713 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.731 -12.487 3.783 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.182 4.182 4 C 0.051 3.949 5 H 0.126 0.874 6 O -0.374 6.374 7 C -0.038 4.038 8 N -0.361 5.361 9 C 0.348 3.652 10 O -0.473 6.473 11 C -0.143 4.143 12 C -0.217 4.217 13 C -0.114 4.114 14 C -0.236 4.236 15 C 0.064 3.936 16 C -0.527 4.527 17 H 0.103 0.897 18 C -0.186 4.186 19 N -0.452 5.452 20 Si 0.804 3.196 21 H -0.176 1.176 22 H -0.197 1.197 23 H -0.185 1.185 24 C -0.152 4.152 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.237 0.763 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.251 0.749 36 H 0.152 0.848 37 H 0.156 0.844 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -12.098 -12.070 3.223 17.390 hybrid contribution 0.180 1.221 0.178 1.247 sum -11.917 -10.849 3.401 16.471 Atomic orbital electron populations 1.21783 0.95308 1.01989 1.01950 1.21420 0.96051 0.95608 1.02446 1.22212 0.93554 0.98577 1.03873 1.22098 0.94084 0.90379 0.88379 0.87407 1.86560 1.77463 1.57227 1.16159 1.22239 0.79795 0.99470 1.02313 1.45675 1.07822 1.08353 1.74286 1.18757 0.88018 0.83579 0.74840 1.90666 1.70920 1.32990 1.52719 1.19792 0.91529 0.95536 1.07452 1.20846 0.94569 0.95276 1.10981 1.20931 0.93925 0.97640 0.98906 1.21417 0.99128 0.92375 1.10696 1.17961 0.91913 0.93939 0.89795 1.19843 0.99479 0.95063 1.38351 0.89723 1.26877 0.94682 1.05396 0.91677 1.69888 1.17360 1.33712 1.24246 0.85227 0.79274 0.75378 0.79712 1.17576 1.19654 1.18483 1.21443 0.94845 0.96362 1.02508 0.92681 0.92299 0.92567 0.92063 0.91644 0.90514 0.90380 0.76282 0.91545 0.91743 0.74879 0.84828 0.84351 0.87252 0.90299 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 71.98 0.71 -1.04 16 2 C -0.12 -1.53 5.83 30.59 0.18 -1.35 16 3 C -0.14 -1.98 4.89 30.59 0.15 -1.83 16 4 C 0.11 1.93 3.00 30.59 0.09 2.02 16 5 H 0.11 1.86 8.14 -2.38 -0.02 1.84 16 6 O -0.57 -10.21 12.82 -148.98 -1.91 -12.12 16 7 C 0.09 2.16 5.31 86.38 0.46 2.61 16 8 N -0.71 -22.61 5.45 -465.94 -2.54 -25.16 16 9 C 0.56 24.92 7.77 86.80 0.67 25.60 16 10 O -0.59 -31.05 16.33 -3.88 -0.06 -31.11 16 11 C -0.14 -6.75 5.87 -20.13 -0.12 -6.87 16 12 C -0.20 -7.93 9.55 22.70 0.22 -7.71 16 13 C -0.10 -3.88 10.01 22.18 0.22 -3.65 16 14 C -0.22 -10.25 9.78 22.77 0.22 -10.03 16 15 C 0.07 3.65 5.57 -21.32 -0.12 3.53 16 16 C -0.50 -27.42 9.05 23.47 0.21 -27.20 16 17 H 0.08 4.37 7.90 -2.91 -0.02 4.35 16 18 C 0.03 1.51 5.14 85.25 0.44 1.94 16 19 N -0.83 -46.66 10.97 21.82 0.24 -46.42 16 20 Si 0.98 39.95 29.59 68.60 2.03 41.98 16 21 H -0.25 -9.59 7.11 99.48 0.71 -8.89 16 22 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 23 H -0.26 -10.35 7.11 99.48 0.71 -9.65 16 24 C -0.13 -7.40 8.23 23.00 0.19 -7.21 16 25 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.06 0.91 7.82 -2.38 -0.02 0.89 16 30 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 32 H 0.39 4.91 9.04 -74.06 -0.67 4.24 16 33 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 11.32 6.49 -92.71 -0.60 10.72 16 36 H 0.13 4.18 6.38 -2.91 -0.02 4.16 16 37 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 38 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 39 H 0.29 14.92 8.30 -92.71 -0.77 14.15 16 40 H 0.10 6.19 5.77 -2.91 -0.02 6.17 16 Total: -1.00 -69.98 337.50 1.07 -68.91 By element: Atomic # 1 Polarization: 35.32 SS G_CDS: -0.22 Total: 35.10 kcal Atomic # 6 Polarization: -34.72 SS G_CDS: 3.53 Total: -31.19 kcal Atomic # 7 Polarization: -69.27 SS G_CDS: -2.30 Total: -71.57 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.97 Total: -43.23 kcal Atomic # 14 Polarization: 39.95 SS G_CDS: 2.03 Total: 41.98 kcal Total: -69.98 1.07 -68.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268565270.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.831 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds