Wall clock time and date at job start Mon Mar 30 2020 02:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47167 * 2 1 4 4 H 1.08997 * 109.47359 * 305.00558 * 3 2 1 5 5 O 1.42899 * 109.46792 * 65.00332 * 3 2 1 6 6 C 1.53001 * 109.46814 * 185.00226 * 3 2 1 7 7 C 1.53002 * 109.46835 * 175.00400 * 6 3 2 8 8 N 1.46500 * 109.47225 * 179.97438 * 7 6 3 9 9 C 1.34777 * 120.00326 * 179.97438 * 8 7 6 10 10 O 1.21549 * 119.99648 * 359.97438 * 9 8 7 11 11 C 1.47880 * 120.00296 * 179.97438 * 9 8 7 12 12 C 1.39929 * 120.02417 * 359.97438 * 11 9 8 13 13 C 1.38330 * 120.35752 * 180.02562 * 12 11 9 14 14 C 1.37752 * 120.41366 * 359.97438 * 13 12 11 15 15 C 1.40755 * 120.03886 * 0.02562 * 14 13 12 16 16 C 1.41435 * 120.17700 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00074 * 335.20949 * 16 15 14 18 18 C 1.39934 * 120.00191 * 155.21234 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.28913 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.28750 * 18 16 15 21 21 H 1.48506 * 109.47124 * 59.99913 * 20 18 16 22 22 H 1.48500 * 109.47358 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.47416 * 300.00115 * 20 18 16 24 24 C 1.38998 * 120.02842 * 180.02562 * 11 9 8 25 25 H 1.09003 * 109.47217 * 179.97438 * 1 2 3 26 26 H 1.09005 * 109.47088 * 299.99442 * 1 2 3 27 27 H 1.08997 * 109.47351 * 59.99284 * 1 2 3 28 28 H 1.09003 * 109.46572 * 240.00504 * 2 1 3 29 29 H 1.08997 * 109.47351 * 120.00716 * 2 1 3 30 30 H 0.96701 * 113.99658 * 59.99746 * 5 3 2 31 31 H 1.09001 * 109.47296 * 55.00607 * 6 3 2 32 32 H 1.09001 * 109.47283 * 295.00026 * 6 3 2 33 33 H 1.09001 * 109.47010 * 60.00032 * 7 6 3 34 34 H 1.09001 * 109.46880 * 299.99873 * 7 6 3 35 35 H 0.97008 * 119.99911 * 0.02562 * 8 7 6 36 36 H 1.08003 * 119.81711 * 0.04656 * 12 11 9 37 37 H 1.07995 * 119.79038 * 179.97438 * 13 12 11 38 38 H 1.07999 * 119.98175 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 40 40 H 1.07993 * 120.19752 * 0.25315 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 3.5648 1.4442 -0.1258 7 6 4.0645 2.8849 -0.2511 8 7 5.5246 2.8867 -0.3709 9 6 6.1893 4.0527 -0.4942 10 8 5.5772 5.1027 -0.5064 11 6 7.6632 4.0545 -0.6146 12 6 8.3684 2.8460 -0.6000 13 6 9.7471 2.8397 -0.7116 14 6 10.4419 4.0224 -0.8389 15 6 9.7497 5.2479 -0.8555 16 6 10.4600 6.4639 -0.9866 17 1 11.4943 6.5209 -0.6806 18 6 9.8229 7.5932 -1.5126 19 7 8.7142 7.4606 -2.1945 20 14 10.5551 9.2901 -1.2413 21 1 11.9181 9.3408 -1.8290 22 1 9.6965 10.3102 -1.8951 23 1 10.6335 9.5684 0.2153 24 6 8.3492 5.2568 -0.7412 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5139 -0.8899 28 1 1.8932 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0142 1.6540 2.0139 31 1 3.8570 0.8800 -1.0114 32 1 4.0030 0.9834 0.7596 33 1 3.7723 3.4491 0.6346 34 1 3.6264 3.3457 -1.1364 35 1 6.0130 2.0486 -0.3623 36 1 7.8332 1.9131 -0.5015 37 1 10.2822 1.9017 -0.6989 38 1 11.5183 4.0094 -0.9259 39 1 8.2727 8.2434 -2.5594 40 1 7.8095 6.1921 -0.7480 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268681464.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:44 Heat of formation + Delta-G solvation = -93.915471 kcal Electronic energy + Delta-G solvation = -20600.613950 eV Core-core repulsion = 17378.923128 eV Total energy + Delta-G solvation = -3221.690822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.28164 -38.32125 -36.97839 -34.61853 -33.71622 -33.08508 -31.11453 -29.74586 -29.40630 -25.99971 -25.19033 -22.84106 -21.67761 -21.59329 -20.87610 -19.48066 -17.73862 -16.60650 -16.33853 -16.02107 -15.64423 -15.07941 -14.88290 -14.63059 -14.44733 -13.79114 -13.61968 -13.16986 -13.01777 -12.78585 -12.58378 -12.46209 -12.24886 -11.71362 -11.66133 -11.33766 -11.27890 -11.13394 -11.05996 -10.97171 -10.73557 -10.49817 -10.18734 -10.01502 -9.68989 -9.20399 -8.98573 -8.62228 -7.62305 -7.51912 -6.79445 -4.41068 2.22528 2.82682 3.08148 3.09907 3.17230 3.63662 3.88811 3.93143 4.16624 4.46492 4.64568 4.67419 4.80065 4.95280 5.05174 5.24927 5.41560 5.49981 5.57960 5.60889 5.64434 5.71965 5.82983 5.95832 6.05352 6.07512 6.17742 6.27149 6.72200 6.88821 6.99395 7.02487 7.21658 7.38501 7.43887 7.70439 7.76448 7.92992 8.10924 8.20076 8.50906 8.80579 8.83927 8.98306 10.15419 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029678 B = 0.003249 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.224829 B = 8616.789191 C = 9358.344195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.155 4.155 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.558 6.558 6 C -0.164 4.164 7 C 0.125 3.875 8 N -0.739 5.739 9 C 0.562 3.438 10 O -0.545 6.545 11 C -0.128 4.128 12 C -0.219 4.219 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.911 3.089 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.263 1.263 24 C -0.092 4.092 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.373 0.627 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.270 -12.489 3.424 16.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.119 0.881 5 O -0.363 6.363 6 C -0.202 4.202 7 C 0.001 3.999 8 N -0.393 5.393 9 C 0.353 3.647 10 O -0.423 6.423 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.187 1.187 24 C -0.112 4.112 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.220 0.780 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.224 -11.177 2.849 16.094 hybrid contribution 0.858 -0.208 0.275 0.924 sum -10.366 -11.385 3.124 15.711 Atomic orbital electron populations 1.21709 0.95124 1.01360 1.02503 1.22241 0.97139 0.97161 1.02791 1.21912 0.92395 0.92728 0.88042 0.88091 1.86619 1.76831 1.57295 1.15588 1.22537 0.96830 0.97472 1.03356 1.21154 0.80725 0.95729 1.02328 1.45971 1.06854 1.09433 1.77068 1.18852 0.88409 0.82734 0.74748 1.90700 1.69936 1.31555 1.50153 1.19488 0.90205 0.95390 1.08026 1.20328 0.94132 0.94719 1.14727 1.20430 0.93696 0.96640 1.00849 1.21095 0.98192 0.92317 1.11655 1.17603 0.91583 0.92469 0.88729 1.19557 0.98890 0.93713 1.36756 0.90094 1.25972 0.94427 1.01629 0.92609 1.69784 1.15367 1.32908 1.22659 0.86317 0.79690 0.80570 0.79893 1.18970 1.20213 1.18705 1.21631 0.94400 0.96302 0.98887 0.92942 0.92041 0.92689 0.90994 0.91632 0.77975 0.90365 0.90966 0.91238 0.92007 0.76745 0.89313 0.88929 0.88618 0.90354 0.84897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.16 0.36 -0.69 16 2 C -0.16 -1.07 5.61 -26.73 -0.15 -1.22 16 3 C 0.11 0.95 2.97 -26.73 -0.08 0.87 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 5 O -0.56 -5.51 12.41 -35.23 -0.44 -5.95 16 6 C -0.16 -1.54 5.01 -26.73 -0.13 -1.67 16 7 C 0.12 1.76 5.57 -4.04 -0.02 1.74 16 8 N -0.74 -12.35 5.51 -61.24 -0.34 -12.69 16 9 C 0.56 12.60 7.77 -12.31 -0.10 12.50 16 10 O -0.55 -14.14 16.33 5.32 0.09 -14.05 16 11 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 12 C -0.22 -4.61 9.55 -38.91 -0.37 -4.99 16 13 C -0.10 -2.09 10.01 -39.73 -0.40 -2.49 16 14 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 15 C 0.10 2.63 5.57 -106.87 -0.60 2.04 16 16 C -0.46 -12.17 9.05 -37.73 -0.34 -12.52 16 17 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.78 -20.98 10.97 55.55 0.61 -20.37 16 20 Si 0.91 18.94 29.59 -169.99 -5.03 13.91 16 21 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 23 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 24 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.37 2.44 9.05 45.56 0.41 2.85 16 31 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.07 1.08 7.82 -51.93 -0.41 0.68 16 34 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.40 5.63 6.49 -40.82 -0.26 5.37 16 36 H 0.09 1.53 6.38 -52.48 -0.33 1.19 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.70 16 39 H 0.29 7.05 8.30 -40.82 -0.34 6.71 16 40 H 0.13 3.89 5.77 -52.49 -0.30 3.59 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -31.21 336.85 -8.34 -39.54 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -5.08 Total: 11.12 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -3.22 Total: -16.59 kcal Atomic # 7 Polarization: -33.33 SS G_CDS: 0.27 Total: -33.06 kcal Atomic # 8 Polarization: -19.65 SS G_CDS: -0.35 Total: -20.00 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.03 Total: 13.91 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.21 -8.34 -39.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268681464.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.372 kcal (2) G-P(sol) polarization free energy of solvation -31.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds