Wall clock time and date at job start Mon Mar 30 2020 02:53:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 H 1.08998 * 109.46962 * 55.00507 * 3 2 1 5 5 O 1.42899 * 109.47184 * 295.00355 * 3 2 1 6 6 C 1.53002 * 109.47258 * 175.00495 * 3 2 1 7 7 C 1.53005 * 109.46949 * 185.00078 * 6 3 2 8 8 N 1.46502 * 109.46869 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99949 * 179.97438 * 8 7 6 10 10 O 1.21549 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.47882 * 119.99923 * 179.97438 * 9 8 7 12 12 C 1.39917 * 120.02536 * 359.97438 * 11 9 8 13 13 C 1.38332 * 120.35896 * 180.02562 * 12 11 9 14 14 C 1.37755 * 120.40966 * 359.97438 * 13 12 11 15 15 C 1.40742 * 120.04148 * 0.02562 * 14 13 12 16 16 C 1.41438 * 120.17962 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99445 * 335.20844 * 16 15 14 18 18 C 1.39934 * 120.00358 * 155.21234 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.28511 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.28347 * 18 16 15 21 21 H 1.48505 * 109.46969 * 90.00053 * 20 18 16 22 22 H 1.48496 * 109.47429 * 209.99807 * 20 18 16 23 23 H 1.48503 * 109.47001 * 330.00084 * 20 18 16 24 24 C 1.38994 * 120.02734 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47029 * 299.99494 * 1 2 3 26 26 H 1.09001 * 109.47566 * 59.99996 * 1 2 3 27 27 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47015 * 240.00129 * 2 1 3 29 29 H 1.09004 * 109.47634 * 120.00532 * 2 1 3 30 30 H 0.96700 * 114.00059 * 300.00035 * 5 3 2 31 31 H 1.08993 * 109.47087 * 65.00029 * 6 3 2 32 32 H 1.09001 * 109.46924 * 304.99924 * 6 3 2 33 33 H 1.09000 * 109.46972 * 60.00306 * 7 6 3 34 34 H 1.08993 * 109.47177 * 299.99976 * 7 6 3 35 35 H 0.97004 * 119.99742 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.82372 * 0.04089 * 12 11 9 37 37 H 1.07999 * 119.79920 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.97665 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.19649 * 0.25919 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4442 0.1256 7 6 4.0645 2.8850 0.2510 8 7 5.5245 2.8866 0.3719 9 6 6.1892 4.0527 0.4944 10 8 5.5773 5.1028 0.5051 11 6 7.6630 4.0543 0.6170 12 6 8.3677 2.8457 0.6064 13 6 9.7463 2.8392 0.7211 14 6 10.4411 4.0220 0.8466 15 6 9.7494 5.2476 0.8593 16 6 10.4600 6.4638 0.9874 17 1 11.4299 6.4750 1.4625 18 6 9.9064 7.6525 0.4988 19 7 8.9251 7.6102 -0.3655 20 14 10.5683 9.2995 1.0804 21 1 11.6692 9.7350 0.1839 22 1 9.4791 10.3084 1.0530 23 1 11.0831 9.1643 2.4668 24 6 8.3490 5.2565 0.7439 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0140 1.6542 -2.0139 31 1 4.0028 0.9836 -0.7598 32 1 3.8571 0.8799 1.0112 33 1 3.6265 3.3456 1.1365 34 1 3.7722 3.4493 -0.6345 35 1 6.0129 2.0485 0.3630 36 1 7.8326 1.9128 0.5078 37 1 10.2811 1.9010 0.7123 38 1 11.5174 4.0087 0.9353 39 1 8.5416 8.4342 -0.7045 40 1 7.8086 6.1915 0.7576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268681465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:47 Heat of formation + Delta-G solvation = -93.848411 kcal Electronic energy + Delta-G solvation = -20602.857699 eV Core-core repulsion = 17381.169785 eV Total energy + Delta-G solvation = -3221.687914 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.28122 -38.31862 -36.97876 -34.61769 -33.71620 -33.08330 -31.11459 -29.74624 -29.40583 -25.99956 -25.19042 -22.84092 -21.67632 -21.59256 -20.87625 -19.48045 -17.73936 -16.60496 -16.33647 -16.02092 -15.64399 -15.06404 -14.90026 -14.62636 -14.43896 -13.79687 -13.62019 -13.16971 -13.00642 -12.79531 -12.59132 -12.46164 -12.24204 -11.73573 -11.64191 -11.34474 -11.27935 -11.12329 -11.05008 -10.96867 -10.74720 -10.48840 -10.18345 -10.02082 -9.68804 -9.20510 -8.98546 -8.62210 -7.62274 -7.51796 -6.79547 -4.40908 2.22548 2.81787 3.08344 3.11302 3.16873 3.63662 3.88723 3.93260 4.16976 4.46549 4.64863 4.67014 4.80198 4.95355 5.05175 5.24925 5.41523 5.49874 5.57877 5.60982 5.64280 5.71948 5.82737 5.95804 6.05299 6.07657 6.18077 6.27171 6.72214 6.88825 6.99412 7.02512 7.21597 7.38561 7.44570 7.70492 7.76525 7.93018 8.10978 8.20107 8.51021 8.80692 8.83944 8.98315 10.15303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.003257 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.865128 B = 8594.126328 C = 9360.517604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.558 6.558 6 C -0.164 4.164 7 C 0.125 3.875 8 N -0.739 5.739 9 C 0.562 3.438 10 O -0.545 6.545 11 C -0.128 4.128 12 C -0.219 4.219 13 C -0.098 4.098 14 C -0.213 4.213 15 C 0.099 3.901 16 C -0.460 4.460 17 H 0.081 0.919 18 C 0.073 3.927 19 N -0.783 5.783 20 Si 0.910 3.090 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.260 1.260 24 C -0.092 4.092 25 H 0.054 0.946 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.374 0.626 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.285 0.715 40 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 -12.681 -0.108 16.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.193 4.193 3 C 0.049 3.951 4 H 0.119 0.881 5 O -0.363 6.363 6 C -0.202 4.202 7 C 0.001 3.999 8 N -0.393 5.393 9 C 0.353 3.647 10 O -0.423 6.423 11 C -0.131 4.131 12 C -0.239 4.239 13 C -0.116 4.116 14 C -0.233 4.233 15 C 0.096 3.904 16 C -0.489 4.489 17 H 0.099 0.901 18 C -0.146 4.146 19 N -0.407 5.407 20 Si 0.734 3.266 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.184 1.184 24 C -0.112 4.112 25 H 0.073 0.927 26 H 0.080 0.920 27 H 0.071 0.929 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.221 0.779 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.107 0.893 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.096 0.904 40 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.469 -11.352 0.159 16.138 hybrid contribution 0.847 -0.209 -0.219 0.899 sum -10.622 -11.561 -0.059 15.700 Atomic orbital electron populations 1.21707 0.95126 1.01359 1.02501 1.22241 0.97137 0.97167 1.02790 1.21908 0.92386 0.92717 0.88060 0.88117 1.86617 1.76828 1.57298 1.15592 1.22537 0.96841 0.97466 1.03357 1.21153 0.80717 0.95736 1.02329 1.45972 1.06856 1.09426 1.77074 1.18854 0.88384 0.82721 0.74786 1.90701 1.69928 1.31520 1.50194 1.19483 0.90206 0.95327 1.08086 1.20324 0.94226 0.94667 1.14691 1.20432 0.93690 0.96627 1.00868 1.21093 0.97867 0.92636 1.11663 1.17604 0.91416 0.92555 0.88825 1.19578 1.04278 0.91203 1.33805 0.90079 1.25974 0.94115 1.01677 0.92882 1.69792 1.19988 1.30860 1.20045 0.86285 0.79285 0.80620 0.80432 1.19437 1.19935 1.18379 1.21630 0.94036 0.96178 0.99386 0.92702 0.92030 0.92944 0.91624 0.91006 0.77938 0.90949 0.90385 0.92047 0.91199 0.76745 0.89315 0.88928 0.88620 0.90406 0.84899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.81 37.15 0.36 -0.69 16 2 C -0.16 -1.07 5.61 -26.74 -0.15 -1.22 16 3 C 0.11 0.95 2.97 -26.73 -0.08 0.87 16 4 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 5 O -0.56 -5.58 12.41 -35.23 -0.44 -6.02 16 6 C -0.16 -1.54 5.01 -26.73 -0.13 -1.67 16 7 C 0.12 1.76 5.57 -4.04 -0.02 1.74 16 8 N -0.74 -12.35 5.51 -61.24 -0.34 -12.69 16 9 C 0.56 12.60 7.77 -12.31 -0.10 12.50 16 10 O -0.55 -14.14 16.33 5.32 0.09 -14.05 16 11 C -0.13 -3.06 5.87 -105.04 -0.62 -3.68 16 12 C -0.22 -4.62 9.55 -38.92 -0.37 -4.99 16 13 C -0.10 -2.09 10.01 -39.72 -0.40 -2.49 16 14 C -0.21 -5.08 9.78 -38.81 -0.38 -5.46 16 15 C 0.10 2.63 5.57 -106.88 -0.60 2.03 16 16 C -0.46 -12.16 9.05 -37.73 -0.34 -12.50 16 17 H 0.08 2.03 7.91 -52.48 -0.41 1.61 16 18 C 0.07 1.86 5.14 -17.34 -0.09 1.77 16 19 N -0.78 -20.97 10.97 55.55 0.61 -20.36 16 20 Si 0.91 18.91 29.59 -169.99 -5.03 13.88 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.92 16 24 C -0.09 -2.49 8.23 -38.44 -0.32 -2.81 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.37 2.51 9.05 45.56 0.41 2.92 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.11 7.82 -51.93 -0.41 0.70 16 35 H 0.40 5.63 6.49 -40.82 -0.26 5.37 16 36 H 0.09 1.53 6.38 -52.49 -0.33 1.19 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.24 16 38 H 0.10 2.12 8.06 -52.49 -0.42 1.69 16 39 H 0.28 7.01 8.30 -40.82 -0.34 6.68 16 40 H 0.13 3.89 5.77 -52.49 -0.30 3.59 16 LS Contribution 336.85 15.07 5.08 5.08 Total: -1.00 -31.25 336.85 -8.34 -39.59 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -5.08 Total: 11.16 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -3.22 Total: -16.58 kcal Atomic # 7 Polarization: -33.32 SS G_CDS: 0.27 Total: -33.05 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: -0.35 Total: -20.07 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -5.03 Total: 13.88 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.25 -8.34 -39.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268681465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.262 kcal (2) G-P(sol) polarization free energy of solvation -31.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds