Wall clock time and date at job start Mon Mar 30 2020 02:53:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52996 * 109.47341 * 2 1 4 4 H 1.08998 * 109.46962 * 55.00507 * 3 2 1 5 5 O 1.42899 * 109.47184 * 295.00355 * 3 2 1 6 6 C 1.53002 * 109.47258 * 175.00495 * 3 2 1 7 7 C 1.53005 * 109.46949 * 185.00078 * 6 3 2 8 8 N 1.46502 * 109.46869 * 179.97438 * 7 6 3 9 9 C 1.34780 * 119.99949 * 179.97438 * 8 7 6 10 10 O 1.21549 * 119.99653 * 0.02562 * 9 8 7 11 11 C 1.47882 * 119.99923 * 179.97438 * 9 8 7 12 12 C 1.39917 * 120.02536 * 359.97438 * 11 9 8 13 13 C 1.38332 * 120.35896 * 180.02562 * 12 11 9 14 14 C 1.37755 * 120.40966 * 359.97438 * 13 12 11 15 15 C 1.40742 * 120.04148 * 0.02562 * 14 13 12 16 16 C 1.41438 * 120.17962 * 180.02562 * 15 14 13 17 17 H 1.08007 * 119.99445 * 335.20844 * 16 15 14 18 18 C 1.39934 * 120.00358 * 155.21234 * 16 15 14 19 19 N 1.30832 * 119.99780 * 342.28511 * 18 16 15 20 20 Si 1.86793 * 120.00293 * 162.28347 * 18 16 15 21 21 H 1.48505 * 109.46969 * 90.00053 * 20 18 16 22 22 H 1.48496 * 109.47429 * 209.99807 * 20 18 16 23 23 H 1.48503 * 109.47001 * 330.00084 * 20 18 16 24 24 C 1.38994 * 120.02734 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47029 * 299.99494 * 1 2 3 26 26 H 1.09001 * 109.47566 * 59.99996 * 1 2 3 27 27 H 1.08997 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.47015 * 240.00129 * 2 1 3 29 29 H 1.09004 * 109.47634 * 120.00532 * 2 1 3 30 30 H 0.96700 * 114.00059 * 300.00035 * 5 3 2 31 31 H 1.08993 * 109.47087 * 65.00029 * 6 3 2 32 32 H 1.09001 * 109.46924 * 304.99924 * 6 3 2 33 33 H 1.09000 * 109.46972 * 60.00306 * 7 6 3 34 34 H 1.08993 * 109.47177 * 299.99976 * 7 6 3 35 35 H 0.97004 * 119.99742 * 0.02562 * 8 7 6 36 36 H 1.08000 * 119.82372 * 0.04089 * 12 11 9 37 37 H 1.07999 * 119.79920 * 179.97438 * 13 12 11 38 38 H 1.08001 * 119.97665 * 180.02562 * 14 13 12 39 39 H 0.96997 * 120.00049 * 180.02562 * 19 18 16 40 40 H 1.08002 * 120.19649 * 0.25919 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 8 1.6619 2.0814 -1.2210 6 6 3.5648 1.4442 0.1256 7 6 4.0645 2.8850 0.2510 8 7 5.5245 2.8866 0.3719 9 6 6.1892 4.0527 0.4944 10 8 5.5773 5.1028 0.5051 11 6 7.6630 4.0543 0.6170 12 6 8.3677 2.8457 0.6064 13 6 9.7463 2.8392 0.7211 14 6 10.4411 4.0220 0.8466 15 6 9.7494 5.2476 0.8593 16 6 10.4600 6.4638 0.9874 17 1 11.4299 6.4750 1.4625 18 6 9.9064 7.6525 0.4988 19 7 8.9251 7.6102 -0.3655 20 14 10.5683 9.2995 1.0804 21 1 11.6692 9.7350 0.1839 22 1 9.4791 10.3084 1.0530 23 1 11.0831 9.1643 2.4668 24 6 8.3490 5.2565 0.7439 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 2.0140 1.6542 -2.0139 31 1 4.0028 0.9836 -0.7598 32 1 3.8571 0.8799 1.0112 33 1 3.6265 3.3456 1.1365 34 1 3.7722 3.4493 -0.6345 35 1 6.0129 2.0485 0.3630 36 1 7.8326 1.9128 0.5078 37 1 10.2811 1.9010 0.7123 38 1 11.5174 4.0087 0.9353 39 1 8.5416 8.4342 -0.7045 40 1 7.8086 6.1915 0.7576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268681465.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:46 Heat of formation + Delta-G solvation = -115.823591 kcal Electronic energy + Delta-G solvation = -20603.810614 eV Core-core repulsion = 17381.169785 eV Total energy + Delta-G solvation = -3222.640829 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.93020 -39.23518 -38.71464 -36.07264 -35.55317 -33.75319 -32.54791 -31.34787 -31.08395 -27.38569 -26.71599 -24.22190 -22.98339 -22.58142 -22.32365 -21.16204 -19.51781 -17.97060 -17.40595 -17.19538 -16.86247 -16.73582 -16.38575 -16.13518 -15.57536 -15.20673 -14.95211 -14.75582 -14.36936 -14.26860 -13.97133 -13.52463 -13.45739 -12.97635 -12.87453 -12.78202 -12.57629 -12.50812 -12.24053 -12.18811 -11.93429 -11.80209 -11.64412 -11.51573 -11.07157 -11.02224 -10.64659 -10.15612 -9.47278 -9.38896 -8.67323 -6.38762 0.37346 1.00475 1.35561 1.45924 1.52099 2.08961 2.18749 2.23746 2.78300 3.49058 3.69405 3.75945 3.88820 4.05364 4.13446 4.27725 4.30964 4.43463 4.55985 4.59701 4.65521 4.75405 4.89262 4.95665 5.04085 5.07601 5.10381 5.13822 5.19315 5.30719 5.36104 5.43208 5.46116 5.51962 5.86357 5.92004 6.04838 6.28372 6.51151 6.69134 6.87223 6.89406 6.94327 7.31121 8.29615 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.029658 B = 0.003257 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.865128 B = 8594.126328 C = 9360.517604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.148 4.148 3 C 0.109 3.891 4 H 0.089 0.911 5 O -0.580 6.580 6 C -0.149 4.149 7 C 0.122 3.878 8 N -0.712 5.712 9 C 0.556 3.444 10 O -0.593 6.593 11 C -0.140 4.140 12 C -0.196 4.196 13 C -0.095 4.095 14 C -0.217 4.217 15 C 0.066 3.934 16 C -0.498 4.498 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.826 5.826 20 Si 0.983 3.017 21 H -0.256 1.256 22 H -0.274 1.274 23 H -0.254 1.254 24 C -0.133 4.133 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.387 0.613 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.414 0.586 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.109 0.891 39 H 0.286 0.714 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.247 -15.933 0.064 18.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C 0.050 3.950 4 H 0.107 0.893 5 O -0.388 6.388 6 C -0.187 4.187 7 C -0.001 4.001 8 N -0.365 5.365 9 C 0.346 3.654 10 O -0.475 6.475 11 C -0.143 4.143 12 C -0.216 4.216 13 C -0.113 4.113 14 C -0.237 4.237 15 C 0.064 3.936 16 C -0.527 4.527 17 H 0.103 0.897 18 C -0.187 4.187 19 N -0.452 5.452 20 Si 0.803 3.197 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.178 1.178 24 C -0.154 4.154 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.082 0.918 28 H 0.097 0.903 29 H 0.102 0.898 30 H 0.236 0.764 31 H 0.109 0.891 32 H 0.116 0.884 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.157 0.843 37 H 0.159 0.841 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.171 -14.685 0.323 18.454 hybrid contribution 0.681 0.570 -0.290 0.934 sum -10.490 -14.115 0.033 17.586 Atomic orbital electron populations 1.21715 0.95493 1.01850 1.01790 1.22172 0.96739 0.95640 1.03985 1.21918 0.91834 0.93893 0.87388 0.89277 1.86591 1.77261 1.58290 1.16637 1.22474 0.97119 0.93895 1.05181 1.21317 0.78805 0.99108 1.00884 1.45755 1.08002 1.08243 1.74507 1.18823 0.88113 0.83617 0.74863 1.90676 1.70588 1.33634 1.52600 1.19790 0.91380 0.95595 1.07528 1.20865 0.94539 0.95257 1.10894 1.20947 0.93981 0.97563 0.98832 1.21423 0.98826 0.92714 1.10692 1.17958 0.91637 0.94093 0.89957 1.19862 1.04994 0.92349 1.35477 0.89700 1.26883 0.94127 1.05321 0.92372 1.69898 1.21848 1.31706 1.21750 0.85195 0.78733 0.75646 0.80130 1.18043 1.19839 1.17779 1.21436 0.94549 0.96217 1.03152 0.93208 0.93029 0.91828 0.90326 0.89820 0.76381 0.89052 0.88404 0.93289 0.93135 0.74753 0.84283 0.84120 0.87265 0.90349 0.88601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.83 9.81 71.98 0.71 -1.13 16 2 C -0.15 -1.58 5.61 30.59 0.17 -1.41 16 3 C 0.11 1.68 2.97 30.59 0.09 1.77 16 4 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 5 O -0.58 -10.87 12.41 -148.98 -1.85 -12.72 16 6 C -0.15 -2.31 5.01 30.60 0.15 -2.16 16 7 C 0.12 3.31 5.57 86.38 0.48 3.79 16 8 N -0.71 -22.40 5.51 -465.93 -2.57 -24.96 16 9 C 0.56 25.08 7.77 86.80 0.67 25.76 16 10 O -0.59 -32.21 16.33 -3.87 -0.06 -32.27 16 11 C -0.14 -6.69 5.87 -20.14 -0.12 -6.80 16 12 C -0.20 -7.58 9.55 22.70 0.22 -7.37 16 13 C -0.10 -3.72 10.01 22.18 0.22 -3.50 16 14 C -0.22 -10.12 9.78 22.77 0.22 -9.90 16 15 C 0.07 3.62 5.57 -21.32 -0.12 3.50 16 16 C -0.50 -27.42 9.05 23.47 0.21 -27.21 16 17 H 0.08 4.39 7.91 -2.91 -0.02 4.37 16 18 C 0.03 1.47 5.14 85.25 0.44 1.91 16 19 N -0.83 -47.06 10.97 21.82 0.24 -46.82 16 20 Si 0.98 40.24 29.59 68.60 2.03 42.27 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 23 H -0.25 -10.03 7.11 99.48 0.71 -9.32 16 24 C -0.13 -7.52 8.23 23.01 0.19 -7.33 16 25 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 26 H 0.05 0.72 7.82 -2.39 -0.02 0.71 16 27 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.39 4.50 9.05 -74.06 -0.67 3.83 16 31 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 34 H 0.05 1.59 7.82 -2.39 -0.02 1.58 16 35 H 0.41 10.00 6.49 -92.71 -0.60 9.40 16 36 H 0.14 3.93 6.38 -2.91 -0.02 3.92 16 37 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 38 H 0.11 4.69 8.06 -2.91 -0.02 4.66 16 39 H 0.29 15.04 8.30 -92.71 -0.77 14.27 16 40 H 0.10 6.08 5.77 -2.91 -0.02 6.06 16 Total: -1.00 -73.60 336.85 1.12 -72.49 By element: Atomic # 1 Polarization: 32.31 SS G_CDS: -0.22 Total: 32.10 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 3.54 Total: -30.08 kcal Atomic # 7 Polarization: -69.46 SS G_CDS: -2.33 Total: -71.79 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -1.91 Total: -44.99 kcal Atomic # 14 Polarization: 40.24 SS G_CDS: 2.03 Total: 42.27 kcal Total: -73.60 1.12 -72.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268681465.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.335 kcal (2) G-P(sol) polarization free energy of solvation -73.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds