Wall clock time and date at job start Mon Mar 30 2020 01:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 C 1.52999 * 109.46862 * 59.99477 * 3 2 1 5 5 O 1.42899 * 109.46962 * 300.00272 * 3 2 1 6 6 C 1.52998 * 109.47200 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.46622 * 184.99833 * 6 3 2 8 8 C 1.34778 * 119.99410 * 180.02562 * 7 6 3 9 9 O 1.21581 * 120.00556 * 359.97438 * 8 7 6 10 10 C 1.47650 * 119.99743 * 180.02562 * 8 7 6 11 11 C 1.40015 * 119.89302 * 359.72577 * 10 8 7 12 12 C 1.36322 * 120.10139 * 179.72181 * 11 10 8 13 13 C 1.40881 * 119.89144 * 0.56929 * 12 11 10 14 14 C 1.41110 * 120.10198 * 179.68041 * 13 12 11 15 15 H 1.08004 * 120.00131 * 204.65280 * 14 13 12 16 16 C 1.40219 * 120.00335 * 24.64455 * 14 13 12 17 17 N 1.30654 * 119.99659 * 17.87850 * 16 14 13 18 18 Si 1.86799 * 120.00592 * 197.87696 * 16 14 13 19 19 H 1.48501 * 109.46943 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47177 * 119.99987 * 18 16 14 21 21 H 1.48497 * 109.47165 * 240.00432 * 18 16 14 22 22 C 1.40889 * 119.79596 * 359.70119 * 13 12 11 23 23 C 1.36317 * 119.89000 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.46975 * 300.00218 * 1 2 3 25 25 H 1.09001 * 109.46614 * 60.00269 * 1 2 3 26 26 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47453 * 239.99966 * 2 1 3 28 28 H 1.09002 * 109.46866 * 120.00220 * 2 1 3 29 29 H 1.09002 * 109.47319 * 300.00363 * 4 3 2 30 30 H 1.09001 * 109.47299 * 60.00276 * 4 3 2 31 31 H 1.08999 * 109.46989 * 180.02562 * 4 3 2 32 32 H 0.96703 * 113.99546 * 299.99441 * 5 3 2 33 33 H 1.08996 * 109.47180 * 304.99805 * 6 3 2 34 34 H 1.08999 * 109.46881 * 65.00461 * 6 3 2 35 35 H 0.96998 * 120.00329 * 0.02562 * 7 6 3 36 36 H 1.07993 * 119.94843 * 359.97438 * 11 10 8 37 37 H 1.07993 * 120.04878 * 180.25420 * 12 11 10 38 38 H 0.97005 * 119.99655 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.05485 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.94365 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 8 1.5638 2.1161 -1.1667 6 6 3.5701 1.4424 0.0006 7 7 4.0584 2.8184 0.1210 8 6 5.3835 3.0637 0.1425 9 8 6.1736 2.1431 0.0624 10 6 5.8756 4.4504 0.2643 11 6 4.9638 5.5093 0.3516 12 6 5.4135 6.7908 0.4700 13 6 6.7981 7.0497 0.4922 14 6 7.2685 8.3751 0.6078 15 1 8.2498 8.6340 0.2385 16 6 6.4617 9.3561 1.2018 17 7 5.4503 9.0047 1.9505 18 14 6.8330 11.1655 0.9230 19 1 8.0219 11.2969 0.0429 20 1 5.6652 11.8166 0.2769 21 1 7.1069 11.8213 2.2268 22 6 7.7117 5.9814 0.3984 23 6 7.2526 4.7027 0.2870 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4400 2.1637 1.2491 30 1 1.8933 1.6499 2.1392 31 1 1.8930 3.1915 1.2490 32 1 1.8491 1.7125 -1.9979 33 1 3.9330 0.8531 0.8427 34 1 3.9337 1.0080 -0.9306 35 1 3.4280 3.5528 0.1852 36 1 3.9026 5.3102 0.3293 37 1 4.7094 7.6065 0.5414 38 1 4.8924 9.6834 2.3618 39 1 8.7741 6.1751 0.4146 40 1 7.9522 3.8831 0.2145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270303005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:10 Heat of formation + Delta-G solvation = -89.697980 kcal Electronic energy + Delta-G solvation = -21085.169175 eV Core-core repulsion = 17863.661237 eV Total energy + Delta-G solvation = -3221.507938 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.56480 -38.33204 -36.98229 -33.94495 -33.85460 -33.20978 -30.45632 -29.46403 -29.31484 -27.16286 -25.66716 -23.49436 -21.67919 -20.90639 -20.36652 -19.52377 -17.53145 -17.25699 -16.36888 -15.66534 -15.53422 -15.03741 -14.84594 -14.47191 -13.98430 -13.68481 -13.55889 -13.18178 -12.74683 -12.54398 -12.32632 -12.27957 -12.16676 -12.06863 -11.88461 -11.74396 -11.34653 -11.26266 -11.15549 -10.93986 -10.66485 -10.63677 -10.06349 -10.02766 -9.55363 -9.33823 -8.94994 -8.57317 -7.70608 -7.52924 -7.02714 -4.59143 2.24494 2.91217 2.95899 3.01423 3.05086 3.72030 3.74937 3.88299 4.18952 4.54892 4.58633 4.67794 4.72738 5.11041 5.26787 5.40984 5.57087 5.62883 5.68925 5.69489 5.76206 5.80935 5.89609 6.06993 6.07351 6.12756 6.21857 6.33112 6.78173 6.83810 6.95081 7.07384 7.14893 7.45013 7.54418 7.67000 7.81072 7.87505 8.08301 8.27356 8.41337 8.64330 8.76639 9.09724 9.89326 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.003631 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.775728 B = 7708.939105 C = 8460.944121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.146 4.146 3 C 0.119 3.881 4 C -0.143 4.143 5 O -0.553 6.553 6 C 0.100 3.900 7 N -0.735 5.735 8 C 0.570 3.430 9 O -0.579 6.579 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.443 4.443 15 H 0.085 0.915 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.913 3.087 19 H -0.257 1.257 20 H -0.269 1.269 21 H -0.272 1.272 22 C -0.239 4.239 23 C -0.022 4.022 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.376 0.624 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.401 0.599 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.596 -8.880 -2.042 13.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.185 4.185 3 C 0.079 3.921 4 C -0.200 4.200 5 O -0.359 6.359 6 C -0.025 4.025 7 N -0.389 5.389 8 C 0.365 3.635 9 O -0.462 6.462 10 C -0.289 4.289 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.125 3.875 14 C -0.470 4.470 15 H 0.103 0.897 16 C -0.147 4.147 17 N -0.395 5.395 18 Si 0.736 3.264 19 H -0.181 1.181 20 H -0.194 1.194 21 H -0.197 1.197 22 C -0.259 4.259 23 C -0.041 4.041 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.223 0.777 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.514 -9.052 -1.484 13.215 hybrid contribution 0.044 0.724 -0.350 0.805 sum -9.470 -8.327 -1.833 12.743 Atomic orbital electron populations 1.21730 0.94884 1.01268 1.02687 1.22127 0.97275 0.96093 1.02979 1.21481 0.91432 0.91984 0.87253 1.21805 1.01927 1.01281 0.94959 1.86561 1.76670 1.57142 1.15548 1.21844 0.93100 0.85469 1.02106 1.45857 1.07748 1.07851 1.77465 1.18617 0.80929 0.89651 0.74303 1.90622 1.55620 1.46843 1.53083 1.18899 0.94252 0.90453 1.25264 1.20483 0.96199 0.93372 0.98053 1.20974 0.96112 0.95243 1.07400 1.17790 0.91714 0.92555 0.85417 1.19876 1.02210 0.92900 1.32037 0.89688 1.26103 0.93720 1.02379 0.92511 1.69758 1.13301 1.36948 1.19457 0.86172 0.79995 0.80811 0.79373 1.18074 1.19380 1.19683 1.20717 0.98098 0.92270 1.14806 1.20355 0.93531 0.96016 0.94230 0.92324 0.92031 0.92980 0.91510 0.90825 0.91379 0.90965 0.91541 0.77686 0.91369 0.92006 0.76227 0.89352 0.86192 0.90297 0.88392 0.88154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.41 37.16 0.35 -0.84 16 2 C -0.15 -1.26 5.17 -26.73 -0.14 -1.40 16 3 C 0.12 1.29 0.75 -90.62 -0.07 1.22 16 4 C -0.14 -1.56 8.26 37.16 0.31 -1.25 16 5 O -0.55 -6.22 12.25 -35.23 -0.43 -6.65 16 6 C 0.10 1.38 4.82 -4.04 -0.02 1.36 16 7 N -0.73 -12.58 5.14 -61.31 -0.32 -12.89 16 8 C 0.57 12.37 7.76 -12.42 -0.10 12.27 16 9 O -0.58 -13.99 16.32 5.29 0.09 -13.90 16 10 C -0.28 -6.62 5.89 -104.73 -0.62 -7.24 16 11 C -0.06 -1.40 9.47 -39.61 -0.38 -1.78 16 12 C -0.18 -4.42 8.63 -39.27 -0.34 -4.76 16 13 C 0.13 3.30 5.58 -106.80 -0.60 2.71 16 14 C -0.44 -11.08 9.04 -37.75 -0.34 -11.42 16 15 H 0.09 2.04 7.91 -52.48 -0.42 1.62 16 16 C 0.07 1.73 5.14 -17.31 -0.09 1.65 16 17 N -0.77 -18.57 10.95 55.56 0.61 -17.96 16 18 Si 0.91 17.34 29.60 -169.99 -5.03 12.31 16 19 H -0.26 -4.87 7.11 56.52 0.40 -4.46 16 20 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 21 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 22 C -0.24 -5.87 9.73 -39.27 -0.38 -6.25 16 23 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 24 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 25 H 0.06 0.52 7.68 -51.93 -0.40 0.12 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.68 6.43 -51.93 -0.33 0.34 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.82 6.57 -51.93 -0.34 0.47 16 32 H 0.38 3.14 9.05 45.56 0.41 3.55 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.40 6.50 4.99 -40.82 -0.20 6.30 16 36 H 0.09 1.74 6.37 -52.49 -0.33 1.40 16 37 H 0.12 3.01 6.15 -52.49 -0.32 2.69 16 38 H 0.29 6.16 8.29 -40.82 -0.34 5.82 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.32 7.63 -52.48 -0.40 1.92 16 LS Contribution 329.19 15.07 4.96 4.96 Total: -1.00 -29.15 329.19 -7.67 -36.82 By element: Atomic # 1 Polarization: 18.72 SS G_CDS: -4.77 Total: 13.95 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -2.78 Total: -16.63 kcal Atomic # 7 Polarization: -31.14 SS G_CDS: 0.29 Total: -30.85 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.35 Total: -20.55 kcal Atomic # 14 Polarization: 17.34 SS G_CDS: -5.03 Total: 12.31 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.15 -7.67 -36.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270303005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.879 kcal (2) G-P(sol) polarization free energy of solvation -29.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds