Wall clock time and date at job start Mon Mar 30 2020 01:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47559 * 2 1 4 4 C 1.52999 * 109.46862 * 59.99477 * 3 2 1 5 5 O 1.42899 * 109.46962 * 300.00272 * 3 2 1 6 6 C 1.52998 * 109.47200 * 179.97438 * 3 2 1 7 7 N 1.46505 * 109.46622 * 184.99833 * 6 3 2 8 8 C 1.34778 * 119.99410 * 180.02562 * 7 6 3 9 9 O 1.21581 * 120.00556 * 359.97438 * 8 7 6 10 10 C 1.47650 * 119.99743 * 180.02562 * 8 7 6 11 11 C 1.40015 * 119.89302 * 359.72577 * 10 8 7 12 12 C 1.36322 * 120.10139 * 179.72181 * 11 10 8 13 13 C 1.40881 * 119.89144 * 0.56929 * 12 11 10 14 14 C 1.41110 * 120.10198 * 179.68041 * 13 12 11 15 15 H 1.08004 * 120.00131 * 204.65280 * 14 13 12 16 16 C 1.40219 * 120.00335 * 24.64455 * 14 13 12 17 17 N 1.30654 * 119.99659 * 17.87850 * 16 14 13 18 18 Si 1.86799 * 120.00592 * 197.87696 * 16 14 13 19 19 H 1.48501 * 109.46943 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47177 * 119.99987 * 18 16 14 21 21 H 1.48497 * 109.47165 * 240.00432 * 18 16 14 22 22 C 1.40889 * 119.79596 * 359.70119 * 13 12 11 23 23 C 1.36317 * 119.89000 * 359.97438 * 22 13 12 24 24 H 1.08995 * 109.46975 * 300.00218 * 1 2 3 25 25 H 1.09001 * 109.46614 * 60.00269 * 1 2 3 26 26 H 1.08999 * 109.47295 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.47453 * 239.99966 * 2 1 3 28 28 H 1.09002 * 109.46866 * 120.00220 * 2 1 3 29 29 H 1.09002 * 109.47319 * 300.00363 * 4 3 2 30 30 H 1.09001 * 109.47299 * 60.00276 * 4 3 2 31 31 H 1.08999 * 109.46989 * 180.02562 * 4 3 2 32 32 H 0.96703 * 113.99546 * 299.99441 * 5 3 2 33 33 H 1.08996 * 109.47180 * 304.99805 * 6 3 2 34 34 H 1.08999 * 109.46881 * 65.00461 * 6 3 2 35 35 H 0.96998 * 120.00329 * 0.02562 * 7 6 3 36 36 H 1.07993 * 119.94843 * 359.97438 * 11 10 8 37 37 H 1.07993 * 120.04878 * 180.25420 * 12 11 10 38 38 H 0.97005 * 119.99655 * 179.97438 * 17 16 14 39 39 H 1.07998 * 120.05485 * 179.97438 * 22 13 12 40 40 H 1.08003 * 119.94365 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.5300 2.1637 1.2492 5 8 1.5638 2.1161 -1.1667 6 6 3.5701 1.4424 0.0006 7 7 4.0584 2.8184 0.1210 8 6 5.3835 3.0637 0.1425 9 8 6.1736 2.1431 0.0624 10 6 5.8756 4.4504 0.2643 11 6 4.9638 5.5093 0.3516 12 6 5.4135 6.7908 0.4700 13 6 6.7981 7.0497 0.4922 14 6 7.2685 8.3751 0.6078 15 1 8.2498 8.6340 0.2385 16 6 6.4617 9.3561 1.2018 17 7 5.4503 9.0047 1.9505 18 14 6.8330 11.1655 0.9230 19 1 8.0219 11.2969 0.0429 20 1 5.6652 11.8166 0.2769 21 1 7.1069 11.8213 2.2268 22 6 7.7117 5.9814 0.3984 23 6 7.2526 4.7027 0.2870 24 1 -0.3633 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.4400 2.1637 1.2491 30 1 1.8933 1.6499 2.1392 31 1 1.8930 3.1915 1.2490 32 1 1.8491 1.7125 -1.9979 33 1 3.9330 0.8531 0.8427 34 1 3.9337 1.0080 -0.9306 35 1 3.4280 3.5528 0.1852 36 1 3.9026 5.3102 0.3293 37 1 4.7094 7.6065 0.5414 38 1 4.8924 9.6834 2.3618 39 1 8.7741 6.1751 0.4146 40 1 7.9522 3.8831 0.2145 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270303005.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:09 Heat of formation + Delta-G solvation = -108.536279 kcal Electronic energy + Delta-G solvation = -21085.986065 eV Core-core repulsion = 17863.661237 eV Total energy + Delta-G solvation = -3222.324828 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.98633 -39.62983 -38.71727 -35.67506 -35.30890 -34.07894 -32.15457 -31.31281 -30.38356 -28.43355 -27.22297 -24.58708 -23.28604 -22.74318 -21.39977 -21.01618 -19.37825 -18.75529 -17.49173 -17.22961 -16.67592 -16.46228 -15.98289 -15.73986 -15.66624 -15.16136 -14.98564 -14.62598 -14.43445 -13.89995 -13.69866 -13.41207 -13.37424 -13.18946 -13.04585 -12.88967 -12.84942 -12.62602 -12.60548 -12.37574 -11.83048 -11.76565 -11.47714 -11.37878 -11.13953 -11.02503 -10.63111 -10.07481 -9.58542 -9.41155 -8.79928 -6.48793 0.43200 1.14006 1.38590 1.42379 1.55727 2.11540 2.17889 2.36796 2.77902 3.32405 3.61021 3.68322 3.85255 3.89924 4.23861 4.30076 4.35529 4.43727 4.55498 4.64600 4.70376 4.78760 4.91535 4.93425 5.00938 5.02990 5.07738 5.13843 5.15165 5.29181 5.36411 5.47419 5.54976 5.59260 5.81407 5.93757 5.98893 6.21731 6.53339 6.67845 6.76513 6.82069 6.88189 7.42703 8.15527 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027559 B = 0.003631 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1015.775728 B = 7708.939105 C = 8460.944121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.142 4.142 3 C 0.129 3.871 4 C -0.147 4.147 5 O -0.565 6.565 6 C 0.095 3.905 7 N -0.718 5.718 8 C 0.569 3.431 9 O -0.607 6.607 10 C -0.295 4.295 11 C -0.053 4.053 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.472 4.472 15 H 0.086 0.914 16 C 0.037 3.963 17 N -0.798 5.798 18 Si 0.989 3.011 19 H -0.257 1.257 20 H -0.260 1.260 21 H -0.263 1.263 22 C -0.253 4.253 23 C -0.032 4.032 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.388 0.612 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.406 0.594 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -8.874 -2.159 14.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.180 4.180 3 C 0.088 3.912 4 C -0.204 4.204 5 O -0.373 6.373 6 C -0.029 4.029 7 N -0.371 5.371 8 C 0.363 3.637 9 O -0.492 6.492 10 C -0.300 4.300 11 C -0.072 4.072 12 C -0.217 4.217 13 C 0.099 3.901 14 C -0.499 4.499 15 H 0.104 0.896 16 C -0.182 4.182 17 N -0.421 5.421 18 Si 0.808 3.192 19 H -0.180 1.180 20 H -0.185 1.185 21 H -0.188 1.188 22 C -0.273 4.273 23 C -0.051 4.051 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.238 0.762 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.244 0.756 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.108 0.892 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.975 -9.072 -1.607 14.329 hybrid contribution 0.439 0.638 -0.302 0.831 sum -10.536 -8.434 -1.909 13.630 Atomic orbital electron populations 1.21712 0.94194 1.02027 1.02390 1.22096 0.97732 0.94330 1.03841 1.21408 0.89019 0.93520 0.87227 1.21862 1.02736 1.00385 0.95402 1.86541 1.76643 1.57797 1.16307 1.22123 0.95396 0.83236 1.02100 1.45738 1.06187 1.09721 1.75434 1.18420 0.82271 0.88582 0.74445 1.90602 1.56729 1.47269 1.54641 1.19194 0.94227 0.91788 1.24766 1.20689 0.97646 0.92420 0.96495 1.21001 0.95814 0.95927 1.08945 1.18133 0.92463 0.93355 0.86184 1.20143 1.03006 0.93554 1.33237 0.89619 1.26947 0.93163 1.06577 0.91502 1.69774 1.13872 1.38944 1.19508 0.85052 0.79883 0.74790 0.79447 1.18042 1.18451 1.18788 1.20866 0.98530 0.92452 1.15434 1.20504 0.94312 0.95917 0.94390 0.92413 0.92527 0.91730 0.90506 0.90205 0.90236 0.90224 0.93144 0.76243 0.91520 0.91839 0.75565 0.86449 0.86867 0.89165 0.87679 0.87873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.41 71.98 0.68 -1.28 16 2 C -0.14 -2.08 5.17 30.59 0.16 -1.92 16 3 C 0.13 2.53 0.75 -10.79 -0.01 2.52 16 4 C -0.15 -2.94 8.26 71.98 0.59 -2.34 16 5 O -0.57 -11.52 12.25 -148.98 -1.83 -13.34 16 6 C 0.10 2.49 4.82 86.38 0.42 2.91 16 7 N -0.72 -23.76 5.14 -466.15 -2.40 -26.15 16 8 C 0.57 24.46 7.76 86.73 0.67 25.13 16 9 O -0.61 -29.25 16.32 -3.97 -0.06 -29.32 16 10 C -0.30 -13.81 5.89 -19.93 -0.12 -13.92 16 11 C -0.05 -2.42 9.47 22.25 0.21 -2.21 16 12 C -0.20 -9.94 8.63 22.47 0.19 -9.75 16 13 C 0.10 5.36 5.58 -21.28 -0.12 5.24 16 14 C -0.47 -24.03 9.04 23.46 0.21 -23.81 16 15 H 0.09 4.18 7.91 -2.91 -0.02 4.16 16 16 C 0.04 1.73 5.14 85.35 0.44 2.17 16 17 N -0.80 -38.33 10.95 21.87 0.24 -38.09 16 18 Si 0.99 34.91 29.60 68.60 2.03 36.94 16 19 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 20 H -0.26 -8.77 7.11 99.48 0.71 -8.07 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 23 C -0.03 -1.56 9.52 22.25 0.21 -1.35 16 24 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 25 H 0.06 0.82 7.68 -2.39 -0.02 0.81 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 28 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.08 1.41 6.43 -2.39 -0.02 1.40 16 30 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.05 1.16 6.57 -2.39 -0.02 1.15 16 32 H 0.39 5.64 9.05 -74.06 -0.67 4.97 16 33 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.41 12.60 4.99 -92.71 -0.46 12.14 16 36 H 0.12 4.48 6.37 -2.91 -0.02 4.46 16 37 H 0.11 5.77 6.15 -2.91 -0.02 5.76 16 38 H 0.30 12.62 8.29 -92.70 -0.77 11.85 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 40 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 Total: -1.00 -62.45 329.19 1.68 -60.77 By element: Atomic # 1 Polarization: 40.40 SS G_CDS: -0.07 Total: 40.33 kcal Atomic # 6 Polarization: -34.90 SS G_CDS: 3.76 Total: -31.14 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: -2.16 Total: -64.24 kcal Atomic # 8 Polarization: -40.77 SS G_CDS: -1.89 Total: -42.66 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Total: -62.45 1.68 -60.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270303005.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.763 kcal (2) G-P(sol) polarization free energy of solvation -62.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds