Wall clock time and date at job start Mon Mar 30 2020 01:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46882 * 2 1 4 4 C 1.52998 * 109.47507 * 305.00022 * 3 2 1 5 5 O 1.42903 * 109.47308 * 65.00363 * 3 2 1 6 6 C 1.53001 * 109.47176 * 185.00065 * 3 2 1 7 7 N 1.46498 * 109.47362 * 180.02562 * 6 3 2 8 8 C 1.34783 * 119.99819 * 180.02562 * 7 6 3 9 9 O 1.21586 * 120.00186 * 359.97438 * 8 7 6 10 10 C 1.47642 * 119.99765 * 179.71985 * 8 7 6 11 11 C 1.40015 * 119.89395 * 0.02562 * 10 8 7 12 12 C 1.36321 * 120.10544 * 179.71765 * 11 10 8 13 13 C 1.40895 * 119.88932 * 0.55022 * 12 11 10 14 14 C 1.41108 * 120.10152 * 179.69677 * 13 12 11 15 15 H 1.07992 * 119.99872 * 204.66399 * 14 13 12 16 16 C 1.40225 * 120.00051 * 24.66454 * 14 13 12 17 17 N 1.30654 * 119.99982 * 17.86632 * 16 14 13 18 18 Si 1.86795 * 120.00136 * 197.86918 * 16 14 13 19 19 H 1.48493 * 109.47526 * 59.99350 * 18 16 14 20 20 H 1.48496 * 109.47534 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46856 * 299.99762 * 18 16 14 22 22 C 1.40889 * 119.79304 * 359.72558 * 13 12 11 23 23 C 1.36323 * 119.89189 * 359.97438 * 22 13 12 24 24 H 1.09007 * 109.47018 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47379 * 300.00207 * 1 2 3 26 26 H 1.09002 * 109.47036 * 60.00049 * 1 2 3 27 27 H 1.09004 * 109.47110 * 240.00010 * 2 1 3 28 28 H 1.08993 * 109.47062 * 120.00273 * 2 1 3 29 29 H 1.09004 * 109.46843 * 300.00196 * 4 3 2 30 30 H 1.08998 * 109.47179 * 59.99973 * 4 3 2 31 31 H 1.08994 * 109.47103 * 180.02562 * 4 3 2 32 32 H 0.96701 * 114.00077 * 59.99277 * 5 3 2 33 33 H 1.08996 * 109.47343 * 59.99635 * 6 3 2 34 34 H 1.09008 * 109.46877 * 300.00534 * 6 3 2 35 35 H 0.96998 * 119.99837 * 359.97438 * 7 6 3 36 36 H 1.07996 * 119.94843 * 359.97438 * 11 10 8 37 37 H 1.07994 * 120.05729 * 180.27717 * 12 11 10 38 38 H 0.97000 * 119.99535 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.04925 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.94393 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0531 2.8256 -0.1251 8 6 5.3741 3.0733 -0.2273 9 8 6.1604 2.1505 -0.3195 10 6 5.8657 4.4655 -0.2329 11 6 4.9579 5.5266 -0.1314 12 6 5.4075 6.8135 -0.1304 13 6 6.7874 7.0751 -0.2433 14 6 7.2572 8.4057 -0.2492 15 1 8.2013 8.6429 -0.7168 16 6 6.4982 9.4199 0.3522 17 7 5.5574 9.1132 1.2053 18 14 6.8323 11.2094 -0.0664 19 1 6.6286 11.4239 -1.5215 20 1 5.9017 12.0786 0.6976 21 1 8.2328 11.5486 0.2926 22 6 7.6965 6.0042 -0.3510 23 6 7.2378 4.7205 -0.3450 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7183 1.7118 -2.1130 30 1 0.3436 2.1978 -1.0920 31 1 1.7936 3.2266 -1.1818 32 1 2.0141 1.6542 2.0139 33 1 3.8532 0.9570 -1.0570 34 1 3.9994 0.9052 0.7161 35 1 3.4258 3.5617 -0.0520 36 1 3.9000 5.3251 -0.0497 37 1 4.7070 7.6312 -0.0476 38 1 5.0321 9.8148 1.6210 39 1 8.7549 6.2000 -0.4382 40 1 7.9339 3.8989 -0.4279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270303007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:13 Heat of formation + Delta-G solvation = -90.041120 kcal Electronic energy + Delta-G solvation = -21083.220643 eV Core-core repulsion = 17861.697825 eV Total energy + Delta-G solvation = -3221.522818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.55558 -38.32820 -36.97666 -33.90355 -33.85129 -33.27141 -30.44724 -29.45605 -29.29562 -27.15861 -25.66791 -23.50532 -21.67439 -20.90121 -20.36941 -19.50182 -17.52551 -17.24597 -16.36759 -15.64529 -15.53687 -15.04205 -14.85706 -14.47052 -13.98039 -13.67429 -13.56988 -13.18008 -12.73587 -12.54665 -12.34007 -12.26826 -12.15386 -12.05078 -11.93250 -11.72271 -11.33821 -11.25366 -11.14055 -10.97840 -10.66999 -10.62562 -10.05733 -10.04302 -9.54142 -9.33034 -8.94800 -8.56861 -7.70247 -7.52663 -7.02076 -4.58963 2.25510 2.93318 2.95155 2.99304 3.05388 3.71344 3.74742 3.88781 4.21223 4.55296 4.58790 4.67827 4.72709 5.09668 5.27335 5.40616 5.57503 5.62462 5.68933 5.69882 5.75203 5.81328 5.88954 6.06099 6.07883 6.13394 6.20949 6.33471 6.78494 6.84077 6.95359 7.07669 7.15285 7.45098 7.55592 7.67413 7.81430 7.87449 8.08607 8.28168 8.41338 8.64415 8.76961 9.10133 9.89910 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.003629 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.525512 B = 7712.968203 C = 8459.277034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.146 4.146 3 C 0.119 3.881 4 C -0.143 4.143 5 O -0.553 6.553 6 C 0.099 3.901 7 N -0.734 5.734 8 C 0.570 3.430 9 O -0.579 6.579 10 C -0.284 4.284 11 C -0.062 4.062 12 C -0.178 4.178 13 C 0.129 3.871 14 C -0.444 4.444 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.771 5.771 18 Si 0.914 3.086 19 H -0.260 1.260 20 H -0.276 1.276 21 H -0.262 1.262 22 C -0.240 4.240 23 C -0.022 4.022 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.377 0.623 33 H 0.068 0.932 34 H 0.061 0.939 35 H 0.401 0.599 36 H 0.089 0.911 37 H 0.120 0.880 38 H 0.287 0.713 39 H 0.098 0.902 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.743 -8.977 -1.262 13.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.184 4.184 3 C 0.078 3.922 4 C -0.200 4.200 5 O -0.359 6.359 6 C -0.026 4.026 7 N -0.389 5.389 8 C 0.365 3.635 9 O -0.462 6.462 10 C -0.289 4.289 11 C -0.081 4.081 12 C -0.197 4.197 13 C 0.126 3.874 14 C -0.471 4.471 15 H 0.102 0.898 16 C -0.147 4.147 17 N -0.394 5.394 18 Si 0.738 3.262 19 H -0.185 1.185 20 H -0.201 1.201 21 H -0.187 1.187 22 C -0.259 4.259 23 C -0.041 4.041 24 H 0.070 0.930 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.091 0.909 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.224 0.776 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.238 0.762 36 H 0.107 0.893 37 H 0.138 0.862 38 H 0.098 0.902 39 H 0.116 0.884 40 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -9.691 -9.129 -1.567 13.405 hybrid contribution 0.098 0.709 0.412 0.826 sum -9.593 -8.420 -1.155 12.816 Atomic orbital electron populations 1.21759 0.94931 1.01314 1.02663 1.22124 0.97265 0.96098 1.02951 1.21484 0.92105 0.92321 0.86246 1.21816 1.01493 1.01045 0.95613 1.86556 1.76724 1.57383 1.15267 1.21844 0.93126 0.85331 1.02273 1.45816 1.08222 1.07373 1.77446 1.18616 0.80869 0.89759 0.74248 1.90623 1.55677 1.46902 1.52988 1.18895 0.94516 0.90190 1.25289 1.20486 0.96264 0.93309 0.98032 1.20977 0.95980 0.95053 1.07737 1.17781 0.91561 0.92623 0.85461 1.19815 1.05376 0.91805 1.30124 0.89758 1.26100 0.93541 1.02412 0.92646 1.69743 1.15778 1.36598 1.17319 0.86258 0.79598 0.80327 0.80063 1.18485 1.20053 1.18682 1.20715 0.98027 0.92236 1.14951 1.20355 0.93533 0.95993 0.94244 0.92978 0.92042 0.92257 0.90858 0.91484 0.91045 0.91328 0.91574 0.77599 0.91382 0.92033 0.76203 0.89319 0.86199 0.90170 0.88404 0.88164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.32 37.16 0.35 -0.85 16 2 C -0.15 -1.26 5.20 -26.73 -0.14 -1.40 16 3 C 0.12 1.29 0.74 -90.62 -0.07 1.22 16 4 C -0.14 -1.52 8.18 37.16 0.30 -1.22 16 5 O -0.55 -6.33 12.26 -35.23 -0.43 -6.77 16 6 C 0.10 1.37 4.78 -4.04 -0.02 1.35 16 7 N -0.73 -12.56 5.10 -61.31 -0.31 -12.87 16 8 C 0.57 12.37 7.76 -12.42 -0.10 12.27 16 9 O -0.58 -13.99 16.32 5.29 0.09 -13.91 16 10 C -0.28 -6.63 5.89 -104.73 -0.62 -7.25 16 11 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 12 C -0.18 -4.43 8.64 -39.27 -0.34 -4.76 16 13 C 0.13 3.32 5.58 -106.80 -0.60 2.72 16 14 C -0.44 -11.11 9.04 -37.75 -0.34 -11.45 16 15 H 0.08 2.01 7.91 -52.49 -0.42 1.59 16 16 C 0.07 1.74 5.14 -17.31 -0.09 1.66 16 17 N -0.77 -18.62 10.95 55.56 0.61 -18.01 16 18 Si 0.91 17.36 29.60 -169.99 -5.03 12.33 16 19 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 20 H -0.28 -5.09 7.11 56.52 0.40 -4.69 16 21 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 22 C -0.24 -5.88 9.73 -39.27 -0.38 -6.26 16 23 C -0.02 -0.53 9.52 -39.61 -0.38 -0.91 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 26 H 0.06 0.47 6.34 -51.93 -0.33 0.14 16 27 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.67 6.34 -51.93 -0.33 0.34 16 31 H 0.07 0.79 6.86 -51.93 -0.36 0.44 16 32 H 0.38 3.28 9.05 45.56 0.41 3.70 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 35 H 0.40 6.52 5.19 -40.82 -0.21 6.31 16 36 H 0.09 1.75 6.37 -52.49 -0.33 1.41 16 37 H 0.12 3.01 6.15 -52.49 -0.32 2.69 16 38 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 39 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 329.43 15.07 4.96 4.96 Total: -1.00 -29.12 329.43 -7.69 -36.81 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -4.79 Total: 14.11 kcal Atomic # 6 Polarization: -13.86 SS G_CDS: -2.79 Total: -16.65 kcal Atomic # 7 Polarization: -31.18 SS G_CDS: 0.30 Total: -30.89 kcal Atomic # 8 Polarization: -20.33 SS G_CDS: -0.35 Total: -20.68 kcal Atomic # 14 Polarization: 17.36 SS G_CDS: -5.03 Total: 12.33 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.12 -7.69 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270303007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.233 kcal (2) G-P(sol) polarization free energy of solvation -29.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds