Wall clock time and date at job start Mon Mar 30 2020 01:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.46882 * 2 1 4 4 C 1.52998 * 109.47507 * 305.00022 * 3 2 1 5 5 O 1.42903 * 109.47308 * 65.00363 * 3 2 1 6 6 C 1.53001 * 109.47176 * 185.00065 * 3 2 1 7 7 N 1.46498 * 109.47362 * 180.02562 * 6 3 2 8 8 C 1.34783 * 119.99819 * 180.02562 * 7 6 3 9 9 O 1.21586 * 120.00186 * 359.97438 * 8 7 6 10 10 C 1.47642 * 119.99765 * 179.71985 * 8 7 6 11 11 C 1.40015 * 119.89395 * 0.02562 * 10 8 7 12 12 C 1.36321 * 120.10544 * 179.71765 * 11 10 8 13 13 C 1.40895 * 119.88932 * 0.55022 * 12 11 10 14 14 C 1.41108 * 120.10152 * 179.69677 * 13 12 11 15 15 H 1.07992 * 119.99872 * 204.66399 * 14 13 12 16 16 C 1.40225 * 120.00051 * 24.66454 * 14 13 12 17 17 N 1.30654 * 119.99982 * 17.86632 * 16 14 13 18 18 Si 1.86795 * 120.00136 * 197.86918 * 16 14 13 19 19 H 1.48493 * 109.47526 * 59.99350 * 18 16 14 20 20 H 1.48496 * 109.47534 * 180.02562 * 18 16 14 21 21 H 1.48506 * 109.46856 * 299.99762 * 18 16 14 22 22 C 1.40889 * 119.79304 * 359.72558 * 13 12 11 23 23 C 1.36323 * 119.89189 * 359.97438 * 22 13 12 24 24 H 1.09007 * 109.47018 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47379 * 300.00207 * 1 2 3 26 26 H 1.09002 * 109.47036 * 60.00049 * 1 2 3 27 27 H 1.09004 * 109.47110 * 240.00010 * 2 1 3 28 28 H 1.08993 * 109.47062 * 120.00273 * 2 1 3 29 29 H 1.09004 * 109.46843 * 300.00196 * 4 3 2 30 30 H 1.08998 * 109.47179 * 59.99973 * 4 3 2 31 31 H 1.08994 * 109.47103 * 180.02562 * 4 3 2 32 32 H 0.96701 * 114.00077 * 59.99277 * 5 3 2 33 33 H 1.08996 * 109.47343 * 59.99635 * 6 3 2 34 34 H 1.09008 * 109.46877 * 300.00534 * 6 3 2 35 35 H 0.96998 * 119.99837 * 359.97438 * 7 6 3 36 36 H 1.07996 * 119.94843 * 359.97438 * 11 10 8 37 37 H 1.07994 * 120.05729 * 180.27717 * 12 11 10 38 38 H 0.97000 * 119.99535 * 180.02562 * 17 16 14 39 39 H 1.07996 * 120.04925 * 179.97438 * 22 13 12 40 40 H 1.07994 * 119.94393 * 179.97438 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4299 2.1991 -1.1816 5 8 1.6620 2.0814 1.2211 6 6 3.5648 1.4444 -0.1257 7 7 4.0531 2.8256 -0.1251 8 6 5.3741 3.0733 -0.2273 9 8 6.1604 2.1505 -0.3195 10 6 5.8657 4.4655 -0.2329 11 6 4.9579 5.5266 -0.1314 12 6 5.4075 6.8135 -0.1304 13 6 6.7874 7.0751 -0.2433 14 6 7.2572 8.4057 -0.2492 15 1 8.2013 8.6429 -0.7168 16 6 6.4982 9.4199 0.3522 17 7 5.5574 9.1132 1.2053 18 14 6.8323 11.2094 -0.0664 19 1 6.6286 11.4239 -1.5215 20 1 5.9017 12.0786 0.6976 21 1 8.2328 11.5486 0.2926 22 6 7.6965 6.0042 -0.3510 23 6 7.2378 4.7205 -0.3450 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8899 29 1 1.7183 1.7118 -2.1130 30 1 0.3436 2.1978 -1.0920 31 1 1.7936 3.2266 -1.1818 32 1 2.0141 1.6542 2.0139 33 1 3.8532 0.9570 -1.0570 34 1 3.9994 0.9052 0.7161 35 1 3.4258 3.5617 -0.0520 36 1 3.9000 5.3251 -0.0497 37 1 4.7070 7.6312 -0.0476 38 1 5.0321 9.8148 1.6210 39 1 8.7549 6.2000 -0.4382 40 1 7.9339 3.8989 -0.4279 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270303007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:12 Heat of formation + Delta-G solvation = -108.845336 kcal Electronic energy + Delta-G solvation = -21084.036055 eV Core-core repulsion = 17861.697825 eV Total energy + Delta-G solvation = -3222.338230 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.97874 -39.62781 -38.71384 -35.67290 -35.27353 -34.14543 -32.15078 -31.30986 -30.35001 -28.41957 -27.21813 -24.59753 -23.28940 -22.74008 -21.41847 -20.97993 -19.37320 -18.74299 -17.49850 -17.22826 -16.64136 -16.48853 -15.97914 -15.73792 -15.66347 -15.16387 -14.98581 -14.63276 -14.42396 -13.89573 -13.69076 -13.43230 -13.35805 -13.16612 -13.03504 -12.90493 -12.84325 -12.66079 -12.58847 -12.36109 -11.81091 -11.79436 -11.48339 -11.37207 -11.13107 -11.01670 -10.63114 -10.07110 -9.58315 -9.41036 -8.79465 -6.48746 0.43775 1.14212 1.39054 1.44728 1.52638 2.11757 2.18002 2.36505 2.78329 3.33622 3.61442 3.68493 3.84505 3.91333 4.24622 4.30506 4.35239 4.43963 4.55125 4.66152 4.70203 4.79780 4.91743 4.93875 5.01210 5.03060 5.07331 5.14341 5.15339 5.29334 5.36274 5.47218 5.54928 5.59341 5.81649 5.93936 5.98882 6.21933 6.53260 6.68282 6.76522 6.81251 6.88387 7.43042 8.15611 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.003629 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.525512 B = 7712.968203 C = 8459.277034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.142 4.142 3 C 0.128 3.872 4 C -0.146 4.146 5 O -0.566 6.566 6 C 0.095 3.905 7 N -0.718 5.718 8 C 0.569 3.431 9 O -0.608 6.608 10 C -0.295 4.295 11 C -0.053 4.053 12 C -0.198 4.198 13 C 0.102 3.898 14 C -0.474 4.474 15 H 0.086 0.914 16 C 0.038 3.962 17 N -0.798 5.798 18 Si 0.989 3.011 19 H -0.258 1.258 20 H -0.264 1.264 21 H -0.258 1.258 22 C -0.254 4.254 23 C -0.032 4.032 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.050 0.950 32 H 0.388 0.612 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.407 0.593 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.297 0.703 39 H 0.105 0.895 40 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.140 -8.978 -1.305 14.367 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.180 4.180 3 C 0.087 3.913 4 C -0.203 4.203 5 O -0.374 6.374 6 C -0.029 4.029 7 N -0.370 5.370 8 C 0.363 3.637 9 O -0.493 6.493 10 C -0.300 4.300 11 C -0.072 4.072 12 C -0.217 4.217 13 C 0.099 3.901 14 C -0.501 4.501 15 H 0.105 0.895 16 C -0.182 4.182 17 N -0.421 5.421 18 Si 0.808 3.192 19 H -0.182 1.182 20 H -0.188 1.188 21 H -0.182 1.182 22 C -0.273 4.273 23 C -0.051 4.051 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.079 0.921 27 H 0.099 0.901 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.069 0.931 32 H 0.237 0.763 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.244 0.756 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.109 0.891 39 H 0.123 0.877 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.126 -9.156 -1.595 14.497 hybrid contribution 0.491 0.620 0.460 0.915 sum -10.635 -8.536 -1.135 13.684 Atomic orbital electron populations 1.21740 0.94227 1.02073 1.02383 1.22094 0.97740 0.94342 1.03804 1.21438 0.89707 0.93897 0.86211 1.21875 1.02226 1.00164 0.96067 1.86537 1.76793 1.58089 1.15947 1.22120 0.95410 0.83087 1.02271 1.45690 1.06646 1.09261 1.75385 1.18417 0.82202 0.88679 0.74407 1.90604 1.56789 1.47320 1.54551 1.19190 0.94488 0.91537 1.24760 1.20691 0.97685 0.92365 0.96496 1.21007 0.95697 0.95730 1.09279 1.18128 0.92302 0.93441 0.86234 1.20105 1.06285 0.92453 1.31237 0.89547 1.26950 0.92897 1.06523 0.91802 1.69767 1.16265 1.38496 1.17582 0.85141 0.79682 0.74538 0.79809 1.18206 1.18785 1.18240 1.20866 0.98464 0.92414 1.15559 1.20505 0.94309 0.95898 0.94415 0.91738 0.92702 0.92148 0.90127 0.90606 0.90074 0.90216 0.93135 0.76290 0.91411 0.92018 0.75562 0.86436 0.86874 0.89150 0.87673 0.87878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.32 71.98 0.67 -1.30 16 2 C -0.14 -2.08 5.20 30.59 0.16 -1.92 16 3 C 0.13 2.51 0.74 -10.80 -0.01 2.51 16 4 C -0.15 -2.84 8.18 71.98 0.59 -2.25 16 5 O -0.57 -11.83 12.26 -148.98 -1.83 -13.65 16 6 C 0.10 2.48 4.78 86.38 0.41 2.90 16 7 N -0.72 -23.71 5.10 -466.15 -2.38 -26.09 16 8 C 0.57 24.46 7.76 86.73 0.67 25.13 16 9 O -0.61 -29.26 16.32 -3.99 -0.07 -29.33 16 10 C -0.30 -13.81 5.89 -19.93 -0.12 -13.93 16 11 C -0.05 -2.41 9.47 22.25 0.21 -2.20 16 12 C -0.20 -9.96 8.64 22.47 0.19 -9.77 16 13 C 0.10 5.37 5.58 -21.28 -0.12 5.26 16 14 C -0.47 -24.09 9.04 23.46 0.21 -23.88 16 15 H 0.09 4.19 7.91 -2.91 -0.02 4.17 16 16 C 0.04 1.75 5.14 85.35 0.44 2.19 16 17 N -0.80 -38.48 10.95 21.87 0.24 -38.24 16 18 Si 0.99 34.90 29.60 68.60 2.03 36.94 16 19 H -0.26 -8.95 7.11 99.48 0.71 -8.24 16 20 H -0.26 -8.73 7.11 99.48 0.71 -8.02 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.19 16 22 C -0.25 -12.75 9.73 22.47 0.22 -12.53 16 23 C -0.03 -1.57 9.52 22.25 0.21 -1.35 16 24 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 25 H 0.05 0.81 7.82 -2.39 -0.02 0.80 16 26 H 0.06 0.79 6.34 -2.39 -0.02 0.78 16 27 H 0.08 1.09 8.14 -2.38 -0.02 1.07 16 28 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 30 H 0.08 1.37 6.34 -2.39 -0.02 1.36 16 31 H 0.05 1.13 6.86 -2.39 -0.02 1.12 16 32 H 0.39 6.00 9.05 -74.06 -0.67 5.33 16 33 H 0.07 1.81 8.14 -2.39 -0.02 1.80 16 34 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.41 12.63 5.19 -92.71 -0.48 12.15 16 36 H 0.12 4.50 6.37 -2.91 -0.02 4.48 16 37 H 0.11 5.77 6.15 -2.91 -0.02 5.76 16 38 H 0.30 12.77 8.29 -92.71 -0.77 12.00 16 39 H 0.11 4.95 8.06 -2.91 -0.02 4.92 16 40 H 0.10 4.88 7.63 -2.91 -0.02 4.86 16 Total: -1.00 -62.39 329.43 1.66 -60.73 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.09 Total: 40.81 kcal Atomic # 6 Polarization: -34.91 SS G_CDS: 3.75 Total: -31.16 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: -2.14 Total: -64.33 kcal Atomic # 8 Polarization: -41.09 SS G_CDS: -1.89 Total: -42.98 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 2.03 Total: 36.94 kcal Total: -62.39 1.66 -60.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270303007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.115 kcal (2) G-P(sol) polarization free energy of solvation -62.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds