Wall clock time and date at job start Mon Mar 30 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00475 * 2 1 4 4 C 1.53003 * 109.46724 * 270.00001 * 3 2 1 5 5 C 1.53006 * 109.46797 * 184.99677 * 4 3 2 6 6 C 1.52994 * 109.47265 * 304.99566 * 4 3 2 7 7 O 1.42902 * 109.47186 * 64.99972 * 4 3 2 8 8 C 1.34781 * 119.99953 * 179.97438 * 2 1 3 9 9 O 1.21581 * 120.00327 * 183.51386 * 8 2 1 10 10 C 1.47639 * 119.99700 * 3.51765 * 8 2 1 11 11 C 1.40012 * 119.89556 * 328.46781 * 10 8 2 12 12 C 1.36320 * 120.10595 * 180.26233 * 11 10 8 13 13 C 1.40886 * 119.89144 * 359.44778 * 12 11 10 14 14 C 1.41115 * 120.10586 * 180.30236 * 13 12 11 15 15 H 1.08002 * 119.99522 * 334.51921 * 14 13 12 16 16 C 1.40225 * 120.00269 * 154.51547 * 14 13 12 17 17 N 1.30644 * 119.99793 * 342.16906 * 16 14 13 18 18 Si 1.86796 * 119.99778 * 162.16459 * 16 14 13 19 19 H 1.48500 * 109.47263 * 94.98676 * 18 16 14 20 20 H 1.48502 * 109.46955 * 214.98427 * 18 16 14 21 21 H 1.48497 * 109.47287 * 334.98530 * 18 16 14 22 22 C 1.40881 * 119.79451 * 0.28042 * 13 12 11 23 23 C 1.36319 * 119.89120 * 359.97438 * 22 13 12 24 24 H 1.09007 * 109.47024 * 275.14566 * 1 2 3 25 25 H 1.08995 * 109.46958 * 35.14329 * 1 2 3 26 26 H 1.08999 * 109.47129 * 155.14324 * 1 2 3 27 27 H 1.09001 * 109.46778 * 29.99870 * 3 2 1 28 28 H 1.08997 * 109.47555 * 149.99830 * 3 2 1 29 29 H 1.08997 * 109.46740 * 59.99773 * 5 4 3 30 30 H 1.09000 * 109.46845 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.46747 * 300.00040 * 5 4 3 32 32 H 1.09000 * 109.46884 * 59.99993 * 6 4 3 33 33 H 1.08991 * 109.47184 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.47404 * 300.00492 * 6 4 3 35 35 H 0.96695 * 113.99752 * 179.97438 * 7 4 3 36 36 H 1.07998 * 119.95233 * 359.97438 * 11 10 8 37 37 H 1.07999 * 120.05541 * 179.72767 * 12 11 10 38 38 H 0.97005 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.05768 * 180.02562 * 22 13 12 40 40 H 1.07996 * 119.94776 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.3240 2.9680 -1.4444 6 6 3.1709 0.5911 -2.1991 7 8 1.2061 1.9935 -2.0815 8 6 2.1389 -1.1672 0.0005 9 8 3.3530 -1.1683 0.0651 10 6 1.4027 -2.4446 -0.0774 11 6 0.1259 -2.5498 0.4875 12 6 -0.5555 -3.7287 0.4227 13 6 0.0223 -4.8390 -0.2240 14 6 -0.6816 -6.0597 -0.2993 15 1 -1.4304 -6.2977 0.4418 16 6 -0.4092 -6.9635 -1.3362 17 7 0.2169 -6.5577 -2.4086 18 14 -0.9413 -8.7476 -1.1839 19 1 -2.2570 -8.9301 -1.8478 20 1 0.0671 -9.6221 -1.8348 21 1 -1.0569 -9.1088 0.2518 22 6 1.3050 -4.7267 -0.7959 23 6 1.9808 -3.5452 -0.7216 24 1 -0.3633 0.0922 1.0236 25 1 -0.3633 0.8403 -0.5915 26 1 -0.3633 -0.9325 -0.4320 27 1 1.6086 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.2747 2.7519 -0.9570 30 1 3.5053 3.2828 -2.4721 31 1 2.8122 3.7653 -0.9054 32 1 2.5501 -0.3048 -2.1977 33 1 3.3529 0.9059 -3.2266 34 1 4.1217 0.3751 -1.7118 35 1 1.2917 2.2803 -3.0009 36 1 -0.3180 -1.6969 0.9793 37 1 -1.5385 -3.8101 0.8625 38 1 0.4057 -7.1831 -3.1258 39 1 1.7518 -5.5750 -1.2930 40 1 2.9639 -3.4579 -1.1600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270369038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:39 Heat of formation + Delta-G solvation = -58.917006 kcal Electronic energy + Delta-G solvation = -21842.143221 eV Core-core repulsion = 18621.970046 eV Total energy + Delta-G solvation = -3220.173175 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.79751 -37.94436 -36.88168 -34.75719 -33.84379 -32.23982 -30.11549 -29.66236 -27.27280 -27.18057 -26.29117 -24.92643 -21.61363 -21.05540 -20.22541 -18.82978 -17.54582 -16.67244 -16.18760 -15.78948 -15.52442 -15.27557 -14.39365 -14.18746 -13.90447 -13.33691 -13.25362 -13.01712 -12.86349 -12.43288 -12.27816 -12.15269 -11.91207 -11.86064 -11.55581 -11.50690 -11.47949 -11.27636 -11.01776 -10.96032 -10.80777 -10.46302 -9.97997 -9.93094 -9.44963 -9.29349 -8.88157 -8.14454 -7.62680 -7.47196 -6.97361 -4.55096 2.33219 2.93683 2.97965 3.03463 3.04891 3.57320 3.77544 3.83616 4.25842 4.54529 4.85700 5.01921 5.04938 5.37517 5.56377 5.57987 5.64752 5.70643 5.77996 5.89464 5.91647 6.00574 6.06043 6.18723 6.19242 6.29556 6.35787 6.55088 6.83880 6.86587 7.03602 7.08972 7.15935 7.48337 7.64992 7.70316 7.82891 7.90530 8.07962 8.17534 8.46812 8.68374 8.80032 9.04014 9.95252 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.004013 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.035260 B = 6975.381083 C = 7143.040759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.614 5.614 3 C 0.133 3.867 4 C 0.110 3.890 5 C -0.174 4.174 6 C -0.171 4.171 7 O -0.557 6.557 8 C 0.574 3.426 9 O -0.569 6.569 10 C -0.278 4.278 11 C -0.065 4.065 12 C -0.237 4.237 13 C 0.128 3.872 14 C -0.448 4.448 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.774 5.774 18 Si 0.911 3.089 19 H -0.268 1.268 20 H -0.273 1.273 21 H -0.258 1.258 22 C -0.179 4.179 23 C -0.040 4.040 24 H 0.045 0.955 25 H 0.066 0.934 26 H 0.098 0.902 27 H 0.074 0.926 28 H 0.093 0.907 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.047 0.953 34 H 0.072 0.928 35 H 0.370 0.630 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.286 0.714 39 H 0.119 0.881 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.816 11.538 -0.285 11.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.346 5.346 3 C 0.009 3.991 4 C 0.069 3.931 5 C -0.232 4.232 6 C -0.228 4.228 7 O -0.362 6.362 8 C 0.370 3.630 9 O -0.450 6.450 10 C -0.282 4.282 11 C -0.084 4.084 12 C -0.256 4.256 13 C 0.125 3.875 14 C -0.476 4.476 15 H 0.101 0.899 16 C -0.146 4.146 17 N -0.397 5.397 18 Si 0.734 3.266 19 H -0.193 1.193 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.199 4.199 23 C -0.060 4.060 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.117 0.883 27 H 0.092 0.908 28 H 0.111 0.889 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.217 0.783 36 H 0.126 0.874 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.136 0.864 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 1.292 11.283 0.109 11.358 hybrid contribution -0.071 -0.550 -0.719 0.908 sum 1.222 10.734 -0.610 10.820 Atomic orbital electron populations 1.22381 0.79875 1.04662 1.00329 1.47574 1.06897 1.05036 1.75137 1.21314 0.98358 0.85855 0.93545 1.21736 0.83874 0.93385 0.94145 1.22429 1.00534 0.97951 1.02325 1.22444 1.01937 0.99434 0.99022 1.86560 1.30401 1.89741 1.29545 1.18700 0.86761 0.83628 0.73944 1.90623 1.14375 1.87714 1.52336 1.18869 0.98224 0.93798 1.17316 1.20941 0.93065 0.97072 0.97274 1.20703 1.00152 0.93510 1.11273 1.17766 0.90698 0.91633 0.87416 1.19794 1.18325 1.00473 1.09003 0.89861 1.26067 0.93168 1.01274 0.94043 1.69750 1.28857 1.37030 1.04068 0.86246 0.79196 0.81005 0.80104 1.19322 1.19780 1.18143 1.20963 0.95344 0.97088 1.06462 1.20386 0.97320 0.92312 0.95938 0.93672 0.91554 0.88337 0.90771 0.88927 0.91446 0.92334 0.91976 0.91390 0.93432 0.90943 0.78323 0.87388 0.88529 0.90324 0.86361 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.09 8.64 59.85 0.52 1.61 16 2 N -0.61 -10.74 2.53 -182.76 -0.46 -11.20 16 3 C 0.13 1.95 4.82 -4.04 -0.02 1.93 16 4 C 0.11 1.44 1.18 -90.62 -0.11 1.33 16 5 C -0.17 -1.75 8.82 37.16 0.33 -1.42 16 6 C -0.17 -2.58 7.50 37.15 0.28 -2.30 16 7 O -0.56 -7.11 11.73 -35.23 -0.41 -7.52 16 8 C 0.57 12.25 5.61 -12.42 -0.07 12.18 16 9 O -0.57 -13.23 14.75 5.29 0.08 -13.15 16 10 C -0.28 -6.41 5.49 -104.73 -0.57 -6.98 16 11 C -0.07 -1.41 7.35 -39.61 -0.29 -1.70 16 12 C -0.24 -5.53 9.73 -39.27 -0.38 -5.91 16 13 C 0.13 3.29 5.57 -106.80 -0.59 2.70 16 14 C -0.45 -11.28 9.04 -37.74 -0.34 -11.62 16 15 H 0.08 1.99 7.91 -52.49 -0.42 1.58 16 16 C 0.08 1.80 5.13 -17.31 -0.09 1.71 16 17 N -0.77 -19.08 11.01 55.56 0.61 -18.46 16 18 Si 0.91 17.61 29.60 -169.99 -5.03 12.58 16 19 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 20 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 22 C -0.18 -4.62 8.63 -39.27 -0.34 -4.96 16 23 C -0.04 -0.99 9.53 -39.61 -0.38 -1.37 16 24 H 0.04 0.63 7.42 -51.92 -0.39 0.24 16 25 H 0.07 0.95 7.04 -51.93 -0.37 0.59 16 26 H 0.10 1.72 4.71 -51.93 -0.24 1.48 16 27 H 0.07 0.94 8.07 -51.93 -0.42 0.53 16 28 H 0.09 1.41 7.37 -51.93 -0.38 1.03 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 1.27 6.27 -51.93 -0.33 0.94 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 1.18 7.53 -51.93 -0.39 0.78 16 35 H 0.37 3.39 9.04 45.56 0.41 3.81 16 36 H 0.11 1.99 4.77 -52.49 -0.25 1.74 16 37 H 0.10 2.08 8.06 -52.49 -0.42 1.65 16 38 H 0.29 6.35 8.29 -40.82 -0.34 6.01 16 39 H 0.12 3.12 6.22 -52.49 -0.33 2.79 16 40 H 0.09 2.26 7.94 -52.49 -0.42 1.85 16 LS Contribution 321.18 15.07 4.84 4.84 Total: -1.00 -28.88 321.18 -7.20 -36.07 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -4.76 Total: 11.64 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -2.06 Total: -14.80 kcal Atomic # 7 Polarization: -29.81 SS G_CDS: 0.15 Total: -29.66 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -0.34 Total: -20.68 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -28.88 -7.20 -36.07 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270369038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.843 kcal (2) G-P(sol) polarization free energy of solvation -28.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds