Wall clock time and date at job start Mon Mar 30 2020 01:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00475 * 2 1 4 4 C 1.53003 * 109.46724 * 270.00001 * 3 2 1 5 5 C 1.53006 * 109.46797 * 184.99677 * 4 3 2 6 6 C 1.52994 * 109.47265 * 304.99566 * 4 3 2 7 7 O 1.42902 * 109.47186 * 64.99972 * 4 3 2 8 8 C 1.34781 * 119.99953 * 179.97438 * 2 1 3 9 9 O 1.21581 * 120.00327 * 183.51386 * 8 2 1 10 10 C 1.47639 * 119.99700 * 3.51765 * 8 2 1 11 11 C 1.40012 * 119.89556 * 328.46781 * 10 8 2 12 12 C 1.36320 * 120.10595 * 180.26233 * 11 10 8 13 13 C 1.40886 * 119.89144 * 359.44778 * 12 11 10 14 14 C 1.41115 * 120.10586 * 180.30236 * 13 12 11 15 15 H 1.08002 * 119.99522 * 334.51921 * 14 13 12 16 16 C 1.40225 * 120.00269 * 154.51547 * 14 13 12 17 17 N 1.30644 * 119.99793 * 342.16906 * 16 14 13 18 18 Si 1.86796 * 119.99778 * 162.16459 * 16 14 13 19 19 H 1.48500 * 109.47263 * 94.98676 * 18 16 14 20 20 H 1.48502 * 109.46955 * 214.98427 * 18 16 14 21 21 H 1.48497 * 109.47287 * 334.98530 * 18 16 14 22 22 C 1.40881 * 119.79451 * 0.28042 * 13 12 11 23 23 C 1.36319 * 119.89120 * 359.97438 * 22 13 12 24 24 H 1.09007 * 109.47024 * 275.14566 * 1 2 3 25 25 H 1.08995 * 109.46958 * 35.14329 * 1 2 3 26 26 H 1.08999 * 109.47129 * 155.14324 * 1 2 3 27 27 H 1.09001 * 109.46778 * 29.99870 * 3 2 1 28 28 H 1.08997 * 109.47555 * 149.99830 * 3 2 1 29 29 H 1.08997 * 109.46740 * 59.99773 * 5 4 3 30 30 H 1.09000 * 109.46845 * 180.02562 * 5 4 3 31 31 H 1.09003 * 109.46747 * 300.00040 * 5 4 3 32 32 H 1.09000 * 109.46884 * 59.99993 * 6 4 3 33 33 H 1.08991 * 109.47184 * 180.02562 * 6 4 3 34 34 H 1.09005 * 109.47404 * 300.00492 * 6 4 3 35 35 H 0.96695 * 113.99752 * 179.97438 * 7 4 3 36 36 H 1.07998 * 119.95233 * 359.97438 * 11 10 8 37 37 H 1.07999 * 120.05541 * 179.72767 * 12 11 10 38 38 H 0.97005 * 119.99623 * 179.97438 * 17 16 14 39 39 H 1.08001 * 120.05768 * 180.02562 * 22 13 12 40 40 H 1.07996 * 119.94776 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7103 -1.4426 5 6 3.3240 2.9680 -1.4444 6 6 3.1709 0.5911 -2.1991 7 8 1.2061 1.9935 -2.0815 8 6 2.1389 -1.1672 0.0005 9 8 3.3530 -1.1683 0.0651 10 6 1.4027 -2.4446 -0.0774 11 6 0.1259 -2.5498 0.4875 12 6 -0.5555 -3.7287 0.4227 13 6 0.0223 -4.8390 -0.2240 14 6 -0.6816 -6.0597 -0.2993 15 1 -1.4304 -6.2977 0.4418 16 6 -0.4092 -6.9635 -1.3362 17 7 0.2169 -6.5577 -2.4086 18 14 -0.9413 -8.7476 -1.1839 19 1 -2.2570 -8.9301 -1.8478 20 1 0.0671 -9.6221 -1.8348 21 1 -1.0569 -9.1088 0.2518 22 6 1.3050 -4.7267 -0.7959 23 6 1.9808 -3.5452 -0.7216 24 1 -0.3633 0.0922 1.0236 25 1 -0.3633 0.8403 -0.5915 26 1 -0.3633 -0.9325 -0.4320 27 1 1.6086 2.0284 0.5138 28 1 3.1500 1.1384 0.5138 29 1 4.2747 2.7519 -0.9570 30 1 3.5053 3.2828 -2.4721 31 1 2.8122 3.7653 -0.9054 32 1 2.5501 -0.3048 -2.1977 33 1 3.3529 0.9059 -3.2266 34 1 4.1217 0.3751 -1.7118 35 1 1.2917 2.2803 -3.0009 36 1 -0.3180 -1.6969 0.9793 37 1 -1.5385 -3.8101 0.8625 38 1 0.4057 -7.1831 -3.1258 39 1 1.7518 -5.5750 -1.2930 40 1 2.9639 -3.4579 -1.1600 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270369038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:39 Heat of formation + Delta-G solvation = -77.121111 kcal Electronic energy + Delta-G solvation = -21842.932610 eV Core-core repulsion = 18621.970046 eV Total energy + Delta-G solvation = -3220.962564 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.30584 -39.37060 -38.45649 -36.26268 -35.59680 -33.35471 -31.91287 -31.45078 -28.57985 -28.31364 -27.86564 -26.44280 -23.30542 -22.87224 -21.45331 -20.37379 -19.38491 -18.06834 -17.52494 -17.16774 -17.14456 -16.71970 -15.97120 -15.47094 -15.35955 -15.00107 -14.73806 -14.32243 -14.18231 -14.08115 -13.79394 -13.62633 -13.30810 -13.14340 -13.00431 -12.86406 -12.69237 -12.64668 -12.59141 -12.53710 -12.18030 -11.85661 -11.73418 -11.28119 -11.08804 -10.95481 -10.56541 -9.63243 -9.44203 -9.32316 -8.76712 -6.45799 0.52934 1.14461 1.37873 1.42643 1.54527 2.04295 2.16270 2.25674 2.75138 3.28843 3.67412 3.82954 3.90284 4.05066 4.09251 4.26107 4.38804 4.52818 4.59941 4.61099 4.66598 4.74071 4.83765 4.90150 4.97645 5.01764 5.04018 5.14671 5.19769 5.21998 5.28357 5.32735 5.60390 5.69442 5.80347 5.99410 6.02496 6.22298 6.54483 6.58272 6.79639 6.88843 6.91401 7.40858 8.18996 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.035166 B = 0.004013 C = 0.003919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.035260 B = 6975.381083 C = 7143.040759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.606 5.606 3 C 0.124 3.876 4 C 0.116 3.884 5 C -0.166 4.166 6 C -0.166 4.166 7 O -0.566 6.566 8 C 0.573 3.427 9 O -0.597 6.597 10 C -0.288 4.288 11 C -0.052 4.052 12 C -0.248 4.248 13 C 0.101 3.899 14 C -0.479 4.479 15 H 0.090 0.910 16 C 0.036 3.964 17 N -0.807 5.807 18 Si 0.987 3.013 19 H -0.258 1.258 20 H -0.267 1.267 21 H -0.255 1.255 22 C -0.200 4.200 23 C -0.053 4.053 24 H 0.072 0.928 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.026 0.974 33 H 0.068 0.932 34 H 0.054 0.946 35 H 0.387 0.613 36 H 0.146 0.854 37 H 0.115 0.885 38 H 0.294 0.706 39 H 0.101 0.899 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.406 13.223 0.125 13.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.337 5.337 3 C 0.001 3.999 4 C 0.075 3.925 5 C -0.223 4.223 6 C -0.224 4.224 7 O -0.374 6.374 8 C 0.367 3.633 9 O -0.481 6.481 10 C -0.292 4.292 11 C -0.070 4.070 12 C -0.267 4.267 13 C 0.098 3.902 14 C -0.506 4.506 15 H 0.108 0.892 16 C -0.183 4.183 17 N -0.431 5.431 18 Si 0.806 3.194 19 H -0.182 1.182 20 H -0.192 1.192 21 H -0.179 1.179 22 C -0.219 4.219 23 C -0.072 4.072 24 H 0.090 0.910 25 H 0.102 0.898 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.046 0.954 33 H 0.087 0.913 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.163 0.837 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.119 0.881 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 0.050 13.021 0.507 13.031 hybrid contribution 0.320 -0.928 -0.891 1.326 sum 0.369 12.093 -0.384 12.104 Atomic orbital electron populations 1.22463 0.78481 1.04313 1.02124 1.47562 1.07829 1.04897 1.73367 1.21611 0.98196 0.84876 0.95168 1.21594 0.84339 0.93934 0.92669 1.22339 0.99840 0.96423 1.03743 1.22392 1.00498 0.98780 1.00720 1.86501 1.30106 1.89816 1.31018 1.18448 0.86338 0.84289 0.74247 1.90601 1.15405 1.88210 1.53845 1.19182 0.99001 0.94374 1.16639 1.21270 0.92128 0.97623 0.96015 1.20968 1.01087 0.93430 1.11254 1.18120 0.90853 0.92999 0.88266 1.20099 1.19220 1.01328 1.09975 0.89232 1.26967 0.92749 1.05441 0.93103 1.69803 1.29580 1.38842 1.04884 0.85119 0.79074 0.75061 0.80113 1.18240 1.19180 1.17851 1.20876 0.96120 0.97069 1.07883 1.20456 0.97206 0.92949 0.96614 0.90981 0.89760 0.90387 0.87939 0.89821 0.91502 0.90675 0.90500 0.95432 0.91271 0.92677 0.76351 0.83681 0.86720 0.89520 0.88072 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.93 8.64 127.77 1.10 3.04 16 2 N -0.61 -20.25 2.53 -850.40 -2.15 -22.40 16 3 C 0.12 3.37 4.82 86.38 0.42 3.78 16 4 C 0.12 2.77 1.18 -10.79 -0.01 2.76 16 5 C -0.17 -2.78 8.82 71.98 0.63 -2.15 16 6 C -0.17 -4.95 7.50 71.98 0.54 -4.41 16 7 O -0.57 -12.76 11.73 -148.98 -1.75 -14.51 16 8 C 0.57 24.52 5.61 86.73 0.49 25.00 16 9 O -0.60 -28.36 14.75 -3.97 -0.06 -28.42 16 10 C -0.29 -13.48 5.49 -19.93 -0.11 -13.59 16 11 C -0.05 -2.22 7.35 22.25 0.16 -2.06 16 12 C -0.25 -11.60 9.73 22.47 0.22 -11.38 16 13 C 0.10 5.33 5.57 -21.28 -0.12 5.21 16 14 C -0.48 -24.60 9.04 23.46 0.21 -24.39 16 15 H 0.09 4.32 7.91 -2.91 -0.02 4.30 16 16 C 0.04 1.71 5.13 85.35 0.44 2.15 16 17 N -0.81 -40.99 11.01 21.87 0.24 -40.75 16 18 Si 0.99 36.10 29.60 68.60 2.03 38.13 16 19 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 20 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.13 7.11 99.48 0.71 -8.43 16 22 C -0.20 -10.85 8.63 22.47 0.19 -10.65 16 23 C -0.05 -2.73 9.53 22.25 0.21 -2.52 16 24 H 0.07 1.70 7.42 -2.38 -0.02 1.69 16 25 H 0.08 2.14 7.04 -2.39 -0.02 2.12 16 26 H 0.08 2.58 4.71 -2.39 -0.01 2.57 16 27 H 0.10 2.22 8.07 -2.39 -0.02 2.20 16 28 H 0.08 2.44 7.37 -2.39 -0.02 2.43 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.03 1.02 6.27 -2.39 -0.01 1.01 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.05 1.81 7.53 -2.38 -0.02 1.79 16 35 H 0.39 5.89 9.04 -74.06 -0.67 5.22 16 36 H 0.15 5.00 4.77 -2.91 -0.01 4.99 16 37 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 38 H 0.29 13.38 8.29 -92.70 -0.77 12.61 16 39 H 0.10 5.70 6.22 -2.91 -0.02 5.68 16 40 H 0.09 4.47 7.94 -2.91 -0.02 4.45 16 Total: -1.00 -64.90 321.18 3.08 -61.82 By element: Atomic # 1 Polarization: 34.94 SS G_CDS: 0.39 Total: 35.33 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.38 Total: -29.21 kcal Atomic # 7 Polarization: -61.24 SS G_CDS: -1.91 Total: -63.15 kcal Atomic # 8 Polarization: -41.12 SS G_CDS: -1.81 Total: -42.93 kcal Atomic # 14 Polarization: 36.10 SS G_CDS: 2.03 Total: 38.13 kcal Total: -64.90 3.08 -61.82 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270369038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.301 kcal (2) G-P(sol) polarization free energy of solvation -64.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds