Wall clock time and date at job start Mon Mar 30 2020 02:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46931 * 2 1 4 4 H 1.09001 * 109.47105 * 305.00920 * 3 2 1 5 5 O 1.42907 * 109.46716 * 65.00110 * 3 2 1 6 6 C 1.53001 * 109.47260 * 185.00103 * 3 2 1 7 7 C 1.52995 * 109.47023 * 175.00292 * 6 3 2 8 8 N 1.46501 * 109.46960 * 180.02562 * 7 6 3 9 9 C 1.34781 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00517 * 359.97438 * 9 8 7 11 11 C 1.47646 * 119.99715 * 179.97438 * 9 8 7 12 12 C 1.40018 * 119.89215 * 359.73020 * 11 9 8 13 13 C 1.36322 * 120.09924 * 179.71321 * 12 11 9 14 14 C 1.40885 * 119.89497 * 0.57497 * 13 12 11 15 15 C 1.41112 * 120.10360 * 179.67350 * 14 13 12 16 16 H 1.07996 * 119.99899 * 204.65198 * 15 14 13 17 17 C 1.40226 * 120.00027 * 24.64608 * 15 14 13 18 18 N 1.30644 * 119.99629 * 17.87481 * 17 15 14 19 19 Si 1.86798 * 120.00006 * 197.87497 * 17 15 14 20 20 H 1.48503 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47046 * 120.00133 * 19 17 15 22 22 H 1.48495 * 109.47248 * 240.00324 * 19 17 15 23 23 C 1.40884 * 119.79257 * 359.69688 * 14 13 12 24 24 C 1.36316 * 119.89297 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47450 * 59.99742 * 1 2 3 26 26 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47089 * 299.99176 * 1 2 3 28 28 H 1.08998 * 109.47089 * 240.00824 * 2 1 3 29 29 H 1.08994 * 109.47450 * 120.00258 * 2 1 3 30 30 H 0.96696 * 113.99589 * 60.00113 * 5 3 2 31 31 H 1.08995 * 109.47052 * 294.99959 * 6 3 2 32 32 H 1.09000 * 109.46865 * 55.00318 * 6 3 2 33 33 H 1.09005 * 109.47260 * 300.00167 * 7 6 3 34 34 H 1.08997 * 109.47614 * 59.99897 * 7 6 3 35 35 H 0.96993 * 120.00081 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.95003 * 359.97438 * 12 11 9 37 37 H 1.07998 * 120.04991 * 180.24638 * 13 12 11 38 38 H 0.97004 * 119.99975 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.05322 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.94940 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4445 -0.1257 7 6 4.0643 2.8851 -0.2511 8 7 5.5243 2.8869 -0.3721 9 6 6.1889 4.0531 -0.4946 10 8 5.5768 5.1035 -0.5051 11 6 7.6604 4.0549 -0.6160 12 6 8.3635 2.8443 -0.5979 13 6 9.7217 2.8407 -0.7155 14 6 10.4186 4.0584 -0.8433 15 6 11.8251 4.0602 -0.9584 16 1 12.3899 4.9320 -0.6632 17 6 12.4892 2.9299 -1.4561 18 7 11.8273 2.0271 -2.1294 19 14 14.3205 2.7152 -1.1562 20 1 14.8323 3.8682 -0.3726 21 1 14.5541 1.4596 -0.3984 22 1 15.0307 2.6469 -2.4585 23 6 9.7071 5.2743 -0.8552 24 6 8.3486 5.2676 -0.7426 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0141 1.6542 2.0139 31 1 4.0029 0.9838 0.7596 32 1 3.8570 0.8802 -1.0114 33 1 3.6261 3.3460 -1.1364 34 1 3.7721 3.4494 0.6345 35 1 6.0127 2.0490 -0.3633 36 1 7.8288 1.9116 -0.4948 37 1 10.2629 1.9062 -0.7055 38 1 12.2868 1.2453 -2.4740 39 1 10.2372 6.2102 -0.9524 40 1 7.8022 6.1991 -0.7521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270384765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:50 Heat of formation + Delta-G solvation = -98.099560 kcal Electronic energy + Delta-G solvation = -20403.267888 eV Core-core repulsion = 17181.395631 eV Total energy + Delta-G solvation = -3221.872258 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.19553 -38.29786 -37.07586 -34.54871 -33.87248 -33.07328 -31.09787 -29.80339 -29.43244 -26.45988 -25.19289 -22.46166 -21.65853 -21.52830 -20.84671 -19.55674 -17.53547 -16.91551 -16.54655 -16.05022 -15.74275 -15.35651 -14.84792 -14.43855 -14.05132 -13.82266 -13.64442 -13.18931 -12.98284 -12.80392 -12.64427 -12.26379 -12.10872 -11.90448 -11.66558 -11.42318 -11.31149 -11.27708 -11.20630 -10.96064 -10.93322 -10.64829 -10.16825 -10.03551 -9.57180 -9.35753 -8.93889 -8.56109 -7.72595 -7.54467 -7.04506 -4.60744 2.23303 2.89809 2.94288 2.99994 3.03158 3.72736 3.73520 3.88213 4.18993 4.49182 4.56867 4.69327 4.82330 4.97873 5.08224 5.27235 5.43540 5.52024 5.56822 5.60893 5.66095 5.83179 5.92102 5.96961 6.03527 6.10276 6.25406 6.32202 6.76386 6.82232 6.95274 7.06641 7.13161 7.43300 7.44868 7.65256 7.78895 7.85710 8.06670 8.25928 8.39422 8.62673 8.74876 9.10328 9.87568 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030515 B = 0.002967 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.348438 B = 9434.798383 C =10173.717611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.559 6.559 6 C -0.165 4.165 7 C 0.127 3.873 8 N -0.744 5.744 9 C 0.570 3.430 10 O -0.575 6.575 11 C -0.284 4.284 12 C -0.063 4.063 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.442 4.442 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.772 5.772 19 Si 0.913 3.087 20 H -0.257 1.257 21 H -0.269 1.269 22 H -0.272 1.272 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.373 0.627 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.470 -8.154 3.205 14.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.119 0.881 5 O -0.364 6.364 6 C -0.203 4.203 7 C 0.003 3.997 8 N -0.397 5.397 9 C 0.365 3.635 10 O -0.457 6.457 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.198 4.198 14 C 0.124 3.876 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.395 5.395 19 Si 0.736 3.264 20 H -0.181 1.181 21 H -0.194 1.194 22 H -0.197 1.197 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.220 0.780 31 H 0.090 0.910 32 H 0.096 0.904 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.202 -7.233 2.640 14.428 hybrid contribution 1.379 -1.162 0.275 1.824 sum -10.823 -8.395 2.915 14.004 Atomic orbital electron populations 1.21706 0.95146 1.01358 1.02460 1.22243 0.97109 0.97189 1.02831 1.21911 0.92452 0.92695 0.87976 0.88144 1.86610 1.76840 1.57327 1.15613 1.22540 0.96756 0.97601 1.03379 1.21097 0.81010 0.95542 1.02046 1.45930 1.06661 1.09501 1.77656 1.18596 0.88168 0.82444 0.74320 1.90635 1.70310 1.31680 1.53079 1.18921 0.90143 0.94652 1.25126 1.20467 0.94864 0.94575 0.98315 1.20974 0.92713 0.98858 1.07241 1.17795 0.93227 0.91171 0.85357 1.19875 0.92082 0.99895 1.35147 0.89673 1.26104 1.01666 0.94651 0.92294 1.69754 1.39005 1.08611 1.22175 0.86173 0.81170 0.79701 0.79313 1.18051 1.19399 1.19672 1.20722 0.93218 0.97412 1.14461 1.20372 0.93914 0.95741 0.94137 0.92713 0.92943 0.92060 0.90977 0.91619 0.77969 0.90985 0.90374 0.92269 0.91452 0.76933 0.89394 0.86201 0.90312 0.88363 0.88089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.81 37.16 0.36 -0.71 16 2 C -0.16 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.11 0.97 2.97 -26.73 -0.08 0.89 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 5 O -0.56 -5.55 12.41 -35.23 -0.44 -5.99 16 6 C -0.16 -1.60 5.01 -26.73 -0.13 -1.74 16 7 C 0.13 1.81 5.57 -4.04 -0.02 1.79 16 8 N -0.74 -12.58 5.50 -61.31 -0.34 -12.91 16 9 C 0.57 12.43 7.76 -12.42 -0.10 12.34 16 10 O -0.58 -14.17 16.32 5.29 0.09 -14.09 16 11 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 12 C -0.06 -1.40 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 14 C 0.13 3.26 5.58 -106.80 -0.60 2.67 16 15 C -0.44 -11.00 9.04 -37.75 -0.34 -11.34 16 16 H 0.09 2.03 7.91 -52.49 -0.42 1.61 16 17 C 0.07 1.72 5.14 -17.31 -0.09 1.63 16 18 N -0.77 -18.42 10.95 55.56 0.61 -17.81 16 19 Si 0.91 17.19 29.60 -169.99 -5.03 12.16 16 20 H -0.26 -4.83 7.11 56.52 0.40 -4.42 16 21 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 22 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.37 2.49 9.04 45.56 0.41 2.90 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 35 H 0.40 5.87 6.47 -40.82 -0.26 5.61 16 36 H 0.09 1.64 6.37 -52.49 -0.33 1.30 16 37 H 0.12 2.96 6.16 -52.49 -0.32 2.64 16 38 H 0.29 6.09 8.29 -40.82 -0.34 5.76 16 39 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 40 H 0.10 2.35 7.63 -52.49 -0.40 1.95 16 LS Contribution 336.56 15.07 5.07 5.07 Total: -1.00 -29.66 336.56 -8.35 -38.01 By element: Atomic # 1 Polarization: 17.17 SS G_CDS: -5.08 Total: 12.09 kcal Atomic # 6 Polarization: -13.30 SS G_CDS: -3.23 Total: -16.53 kcal Atomic # 7 Polarization: -31.00 SS G_CDS: 0.27 Total: -30.72 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.35 Total: -20.08 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.66 -8.35 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270384765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.088 kcal (2) G-P(sol) polarization free energy of solvation -29.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds