Wall clock time and date at job start Mon Mar 30 2020 02:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.46931 * 2 1 4 4 H 1.09001 * 109.47105 * 305.00920 * 3 2 1 5 5 O 1.42907 * 109.46716 * 65.00110 * 3 2 1 6 6 C 1.53001 * 109.47260 * 185.00103 * 3 2 1 7 7 C 1.52995 * 109.47023 * 175.00292 * 6 3 2 8 8 N 1.46501 * 109.46960 * 180.02562 * 7 6 3 9 9 C 1.34781 * 119.99660 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00517 * 359.97438 * 9 8 7 11 11 C 1.47646 * 119.99715 * 179.97438 * 9 8 7 12 12 C 1.40018 * 119.89215 * 359.73020 * 11 9 8 13 13 C 1.36322 * 120.09924 * 179.71321 * 12 11 9 14 14 C 1.40885 * 119.89497 * 0.57497 * 13 12 11 15 15 C 1.41112 * 120.10360 * 179.67350 * 14 13 12 16 16 H 1.07996 * 119.99899 * 204.65198 * 15 14 13 17 17 C 1.40226 * 120.00027 * 24.64608 * 15 14 13 18 18 N 1.30644 * 119.99629 * 17.87481 * 17 15 14 19 19 Si 1.86798 * 120.00006 * 197.87497 * 17 15 14 20 20 H 1.48503 * 109.47078 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.47046 * 120.00133 * 19 17 15 22 22 H 1.48495 * 109.47248 * 240.00324 * 19 17 15 23 23 C 1.40884 * 119.79257 * 359.69688 * 14 13 12 24 24 C 1.36316 * 119.89297 * 0.02562 * 23 14 13 25 25 H 1.08994 * 109.47450 * 59.99742 * 1 2 3 26 26 H 1.09000 * 109.46919 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47089 * 299.99176 * 1 2 3 28 28 H 1.08998 * 109.47089 * 240.00824 * 2 1 3 29 29 H 1.08994 * 109.47450 * 120.00258 * 2 1 3 30 30 H 0.96696 * 113.99589 * 60.00113 * 5 3 2 31 31 H 1.08995 * 109.47052 * 294.99959 * 6 3 2 32 32 H 1.09000 * 109.46865 * 55.00318 * 6 3 2 33 33 H 1.09005 * 109.47260 * 300.00167 * 7 6 3 34 34 H 1.08997 * 109.47614 * 59.99897 * 7 6 3 35 35 H 0.96993 * 120.00081 * 359.97438 * 8 7 6 36 36 H 1.07999 * 119.95003 * 359.97438 * 12 11 9 37 37 H 1.07998 * 120.04991 * 180.24638 * 13 12 11 38 38 H 0.97004 * 119.99975 * 179.97438 * 18 17 15 39 39 H 1.08001 * 120.05322 * 179.97438 * 23 14 13 40 40 H 1.08001 * 119.94940 * 180.02562 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 -0.8417 5 8 1.6619 2.0814 1.2211 6 6 3.5648 1.4445 -0.1257 7 6 4.0643 2.8851 -0.2511 8 7 5.5243 2.8869 -0.3721 9 6 6.1889 4.0531 -0.4946 10 8 5.5768 5.1035 -0.5051 11 6 7.6604 4.0549 -0.6160 12 6 8.3635 2.8443 -0.5979 13 6 9.7217 2.8407 -0.7155 14 6 10.4186 4.0584 -0.8433 15 6 11.8251 4.0602 -0.9584 16 1 12.3899 4.9320 -0.6632 17 6 12.4892 2.9299 -1.4561 18 7 11.8273 2.0271 -2.1294 19 14 14.3205 2.7152 -1.1562 20 1 14.8323 3.8682 -0.3726 21 1 14.5541 1.4596 -0.3984 22 1 15.0307 2.6469 -2.4585 23 6 9.7071 5.2743 -0.8552 24 6 8.3486 5.2676 -0.7426 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 2.0141 1.6542 2.0139 31 1 4.0029 0.9838 0.7596 32 1 3.8570 0.8802 -1.0114 33 1 3.6261 3.3460 -1.1364 34 1 3.7721 3.4494 0.6345 35 1 6.0127 2.0490 -0.3633 36 1 7.8288 1.9116 -0.4948 37 1 10.2629 1.9062 -0.7055 38 1 12.2868 1.2453 -2.4740 39 1 10.2372 6.2102 -0.9524 40 1 7.8022 6.1991 -0.7521 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270384765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:49 Heat of formation + Delta-G solvation = -117.526739 kcal Electronic energy + Delta-G solvation = -20404.110314 eV Core-core repulsion = 17181.395631 eV Total energy + Delta-G solvation = -3222.714683 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.80761 -39.25900 -38.76047 -35.94172 -35.67359 -33.74864 -32.51730 -31.35476 -31.16380 -27.98224 -26.41204 -23.81951 -23.00952 -22.53502 -22.33503 -21.19968 -19.37247 -18.47150 -17.41863 -17.25670 -16.87338 -16.83470 -16.06017 -15.75431 -15.63830 -15.21701 -14.93998 -14.70070 -14.44079 -13.98651 -13.88830 -13.68557 -13.44773 -13.21276 -12.89770 -12.84728 -12.65898 -12.49018 -12.38632 -12.20542 -11.80928 -11.77068 -11.64645 -11.37761 -11.13153 -10.98496 -10.59730 -10.07107 -9.57955 -9.40913 -8.79878 -6.48542 0.43418 1.14438 1.38896 1.42417 1.55774 2.11893 2.18032 2.37818 2.78101 3.49535 3.68567 3.76219 3.94042 4.09200 4.23383 4.27845 4.31900 4.38507 4.43980 4.57696 4.66378 4.76976 4.91727 4.94727 5.02736 5.04610 5.11043 5.13724 5.15868 5.29846 5.36038 5.42839 5.55994 5.59916 5.81929 5.94200 5.99074 6.22308 6.53570 6.71669 6.76836 6.88656 6.89219 7.44210 8.15599 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030515 B = 0.002967 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.348438 B = 9434.798383 C =10173.717611 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.149 4.149 3 C 0.111 3.889 4 H 0.090 0.910 5 O -0.578 6.578 6 C -0.151 4.151 7 C 0.126 3.874 8 N -0.725 5.725 9 C 0.568 3.432 10 O -0.610 6.610 11 C -0.295 4.295 12 C -0.052 4.052 13 C -0.198 4.198 14 C 0.100 3.900 15 C -0.472 4.472 16 H 0.084 0.916 17 C 0.038 3.962 18 N -0.797 5.797 19 Si 0.988 3.012 20 H -0.258 1.258 21 H -0.259 1.259 22 H -0.264 1.264 23 C -0.254 4.254 24 C -0.035 4.035 25 H 0.049 0.951 26 H 0.062 0.938 27 H 0.052 0.948 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.387 0.613 31 H 0.088 0.912 32 H 0.092 0.908 33 H 0.047 0.953 34 H 0.053 0.947 35 H 0.409 0.591 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.297 0.703 39 H 0.103 0.897 40 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.317 -10.413 3.467 15.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 C 0.052 3.948 4 H 0.108 0.892 5 O -0.386 6.386 6 C -0.189 4.189 7 C 0.002 3.998 8 N -0.377 5.377 9 C 0.361 3.639 10 O -0.495 6.495 11 C -0.299 4.299 12 C -0.071 4.071 13 C -0.217 4.217 14 C 0.097 3.903 15 C -0.499 4.499 16 H 0.103 0.897 17 C -0.181 4.181 18 N -0.420 5.420 19 Si 0.808 3.192 20 H -0.182 1.182 21 H -0.183 1.183 22 H -0.188 1.188 23 C -0.273 4.273 24 C -0.054 4.054 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.236 0.764 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.246 0.754 36 H 0.144 0.856 37 H 0.134 0.866 38 H 0.109 0.891 39 H 0.122 0.878 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.076 -9.537 2.909 15.661 hybrid contribution 1.238 -0.456 0.182 1.332 sum -10.838 -9.993 3.091 15.063 Atomic orbital electron populations 1.21708 0.95330 1.01843 1.01872 1.22182 0.96873 0.95793 1.03844 1.21890 0.91687 0.93782 0.87457 0.89160 1.86582 1.77214 1.58219 1.16563 1.22479 0.97259 0.94350 1.04846 1.21248 0.79038 0.98647 1.00831 1.45781 1.07899 1.08509 1.75491 1.18476 0.87736 0.83291 0.74383 1.90615 1.70745 1.33241 1.54857 1.19191 0.91277 0.94712 1.24740 1.20732 0.94229 0.95765 0.96388 1.21025 0.93686 0.98319 1.08682 1.18154 0.94103 0.91916 0.86112 1.20132 0.92251 1.01119 1.36412 0.89744 1.26929 1.06214 0.93688 0.91310 1.69762 1.41125 1.09105 1.22039 0.85061 0.75071 0.79730 0.79368 1.18154 1.18330 1.18845 1.20855 0.93573 0.97651 1.15231 1.20517 0.93941 0.96453 0.94475 0.93142 0.91910 0.92865 0.90091 0.90422 0.76393 0.89302 0.88971 0.93444 0.92856 0.75418 0.85598 0.86634 0.89130 0.87844 0.88142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.81 71.98 0.71 -1.17 16 2 C -0.15 -1.73 5.61 30.60 0.17 -1.56 16 3 C 0.11 1.76 2.97 30.60 0.09 1.85 16 4 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 5 O -0.58 -10.64 12.41 -148.98 -1.85 -12.49 16 6 C -0.15 -2.54 5.01 30.59 0.15 -2.38 16 7 C 0.13 3.42 5.57 86.38 0.48 3.90 16 8 N -0.72 -23.27 5.50 -466.15 -2.57 -25.84 16 9 C 0.57 24.50 7.76 86.73 0.67 25.17 16 10 O -0.61 -30.33 16.32 -3.97 -0.06 -30.39 16 11 C -0.29 -13.61 5.89 -19.93 -0.12 -13.73 16 12 C -0.05 -2.27 9.47 22.25 0.21 -2.06 16 13 C -0.20 -9.70 8.63 22.47 0.19 -9.50 16 14 C 0.10 5.22 5.58 -21.28 -0.12 5.10 16 15 C -0.47 -23.78 9.04 23.46 0.21 -23.57 16 16 H 0.08 4.10 7.91 -2.91 -0.02 4.08 16 17 C 0.04 1.73 5.14 85.35 0.44 2.17 16 18 N -0.80 -37.59 10.95 21.87 0.24 -37.35 16 19 Si 0.99 34.41 29.60 68.60 2.03 36.44 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 21 H -0.26 -8.56 7.11 99.48 0.71 -7.85 16 22 H -0.26 -8.82 7.11 99.48 0.71 -8.11 16 23 C -0.25 -12.74 9.73 22.47 0.22 -12.52 16 24 C -0.03 -1.70 9.52 22.25 0.21 -1.48 16 25 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.05 0.75 7.82 -2.39 -0.02 0.73 16 28 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.39 4.42 9.04 -74.06 -0.67 3.75 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 33 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 34 H 0.05 1.63 7.82 -2.39 -0.02 1.61 16 35 H 0.41 10.95 6.47 -92.71 -0.60 10.35 16 36 H 0.13 4.35 6.37 -2.91 -0.02 4.34 16 37 H 0.12 5.69 6.16 -2.91 -0.02 5.68 16 38 H 0.30 12.36 8.29 -92.71 -0.77 11.59 16 39 H 0.10 4.89 8.06 -2.91 -0.02 4.87 16 40 H 0.10 4.82 7.63 -2.91 -0.02 4.80 16 Total: -1.00 -64.59 336.56 1.10 -63.49 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: -0.22 Total: 35.91 kcal Atomic # 6 Polarization: -33.30 SS G_CDS: 3.53 Total: -29.77 kcal Atomic # 7 Polarization: -60.86 SS G_CDS: -2.33 Total: -63.19 kcal Atomic # 8 Polarization: -40.97 SS G_CDS: -1.91 Total: -42.88 kcal Atomic # 14 Polarization: 34.41 SS G_CDS: 2.03 Total: 36.44 kcal Total: -64.59 1.10 -63.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270384765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.035 kcal (2) G-P(sol) polarization free energy of solvation -64.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds