Wall clock time and date at job start Mon Mar 30 2020 02:53:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.46826 * 2 1 4 4 H 1.09001 * 109.47168 * 55.00056 * 3 2 1 5 5 O 1.42900 * 109.47045 * 294.99610 * 3 2 1 6 6 C 1.53003 * 109.46699 * 174.99844 * 3 2 1 7 7 C 1.53005 * 109.46853 * 184.99615 * 6 3 2 8 8 N 1.46496 * 109.46923 * 179.97438 * 7 6 3 9 9 C 1.34775 * 119.99930 * 180.02562 * 8 7 6 10 10 O 1.21587 * 119.99948 * 0.02562 * 9 8 7 11 11 C 1.47644 * 120.00436 * 180.02562 * 9 8 7 12 12 C 1.40011 * 119.89186 * 359.73173 * 11 9 8 13 13 C 1.36311 * 120.10837 * 179.71645 * 12 11 9 14 14 C 1.40888 * 119.89111 * 0.57416 * 13 12 11 15 15 C 1.41107 * 120.10772 * 179.67426 * 14 13 12 16 16 H 1.08001 * 120.00361 * 155.08176 * 15 14 13 17 17 C 1.40223 * 119.99920 * 335.08838 * 15 14 13 18 18 N 1.30648 * 120.00112 * 342.20183 * 17 15 14 19 19 Si 1.86799 * 119.99859 * 162.20408 * 17 15 14 20 20 H 1.48498 * 109.47259 * 94.66036 * 19 17 15 21 21 H 1.48510 * 109.46901 * 214.65535 * 19 17 15 22 22 H 1.48491 * 109.47615 * 334.65499 * 19 17 15 23 23 C 1.40895 * 119.78951 * 359.69846 * 14 13 12 24 24 C 1.36312 * 119.89282 * 359.97438 * 23 14 13 25 25 H 1.08999 * 109.47576 * 299.99867 * 1 2 3 26 26 H 1.09004 * 109.47425 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47675 * 60.00216 * 1 2 3 28 28 H 1.09001 * 109.47016 * 120.00117 * 2 1 3 29 29 H 1.08999 * 109.46870 * 239.99889 * 2 1 3 30 30 H 0.96694 * 114.00495 * 300.00353 * 5 3 2 31 31 H 1.08992 * 109.47193 * 305.00072 * 6 3 2 32 32 H 1.09000 * 109.47181 * 65.00463 * 6 3 2 33 33 H 1.09000 * 109.47343 * 300.00433 * 7 6 3 34 34 H 1.09000 * 109.46535 * 60.00453 * 7 6 3 35 35 H 0.96998 * 120.00527 * 0.02562 * 8 7 6 36 36 H 1.08010 * 119.94810 * 359.97438 * 12 11 9 37 37 H 1.07999 * 120.05900 * 180.25231 * 13 12 11 38 38 H 0.96996 * 120.00451 * 180.02562 * 18 17 15 39 39 H 1.08004 * 120.04838 * 179.97438 * 23 14 13 40 40 H 1.08005 * 119.94579 * 179.97438 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4443 0.1258 7 6 4.0644 2.8851 0.2511 8 7 5.5243 2.8868 0.3721 9 6 6.1889 4.0527 0.4956 10 8 5.5767 5.1032 0.5070 11 6 7.6604 4.0546 0.6170 12 6 8.3627 2.8434 0.6093 13 6 9.7217 2.8403 0.7153 14 6 10.4186 4.0579 0.8450 15 6 11.8248 4.0596 0.9620 16 1 12.3904 4.9301 0.6642 17 6 12.4879 2.9309 1.4647 18 7 11.8244 2.0301 2.1393 19 14 14.3198 2.7155 1.1699 20 1 15.0743 3.2471 2.3333 21 1 14.6272 1.2728 0.9980 22 1 14.7144 3.4551 -0.0558 23 6 9.7069 5.2738 0.8580 24 6 8.3485 5.2672 0.7447 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.0140 1.6542 -2.0139 31 1 3.8569 0.8801 1.0113 32 1 4.0029 0.9836 -0.7596 33 1 3.7721 3.4493 -0.6345 34 1 3.6263 3.3457 1.1365 35 1 6.0128 2.0488 0.3634 36 1 7.8272 1.9102 0.5150 37 1 10.2629 1.9058 0.7051 38 1 12.2831 1.2495 2.4874 39 1 10.2369 6.2096 0.9577 40 1 7.8021 6.1988 0.7550 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270384768.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:53:53 Heat of formation + Delta-G solvation = -98.086625 kcal Electronic energy + Delta-G solvation = -20403.240670 eV Core-core repulsion = 17181.368973 eV Total energy + Delta-G solvation = -3221.871697 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.19555 -38.29813 -37.07516 -34.54818 -33.87021 -33.07322 -31.09725 -29.80287 -29.43332 -26.45928 -25.19206 -22.46120 -21.65866 -21.52782 -20.84616 -19.55675 -17.53342 -16.91545 -16.54661 -16.04995 -15.74178 -15.35662 -14.84784 -14.43927 -14.05166 -13.82042 -13.64577 -13.19033 -12.98159 -12.80094 -12.64141 -12.26335 -12.10685 -11.90914 -11.66504 -11.42318 -11.29514 -11.27314 -11.20836 -10.97314 -10.94505 -10.63710 -10.16923 -10.05471 -9.56622 -9.35347 -8.93820 -8.56095 -7.72445 -7.54213 -7.04375 -4.60645 2.23716 2.89800 2.93749 3.00199 3.03176 3.72706 3.73436 3.88381 4.18995 4.49192 4.57029 4.69327 4.82335 4.97876 5.08219 5.27241 5.43554 5.52019 5.56865 5.60908 5.66097 5.83194 5.92088 5.96943 6.03511 6.10292 6.25411 6.32174 6.76380 6.82259 6.95276 7.06624 7.13153 7.43257 7.44947 7.65272 7.78808 7.85577 8.06753 8.25913 8.39272 8.62616 8.74902 9.10332 9.87835 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.030530 B = 0.002967 C = 0.002751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.910156 B = 9435.448795 C =10174.029503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.156 4.156 3 C 0.109 3.891 4 H 0.101 0.899 5 O -0.559 6.559 6 C -0.165 4.165 7 C 0.127 3.873 8 N -0.744 5.744 9 C 0.570 3.430 10 O -0.575 6.575 11 C -0.284 4.284 12 C -0.063 4.063 13 C -0.179 4.179 14 C 0.128 3.872 15 C -0.443 4.443 16 H 0.085 0.915 17 C 0.074 3.926 18 N -0.773 5.773 19 Si 0.913 3.087 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.257 1.257 23 C -0.239 4.239 24 C -0.022 4.022 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.060 0.940 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.373 0.627 31 H 0.078 0.922 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.059 0.941 35 H 0.396 0.604 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.286 0.714 39 H 0.098 0.902 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.468 -8.156 -3.201 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.194 4.194 3 C 0.050 3.950 4 H 0.119 0.881 5 O -0.364 6.364 6 C -0.203 4.203 7 C 0.003 3.997 8 N -0.397 5.397 9 C 0.365 3.635 10 O -0.457 6.457 11 C -0.288 4.288 12 C -0.082 4.082 13 C -0.198 4.198 14 C 0.125 3.875 15 C -0.470 4.470 16 H 0.103 0.897 17 C -0.147 4.147 18 N -0.396 5.396 19 Si 0.736 3.264 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.258 4.258 24 C -0.042 4.042 25 H 0.073 0.927 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.220 0.780 31 H 0.096 0.904 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.231 0.769 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.097 0.903 39 H 0.116 0.884 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.202 -7.239 -2.635 14.430 hybrid contribution 1.384 -1.155 -0.260 1.821 sum -10.817 -8.394 -2.896 13.995 Atomic orbital electron populations 1.21707 0.95147 1.01357 1.02459 1.22244 0.97108 0.97190 1.02831 1.21908 0.92451 0.92693 0.87976 0.88143 1.86606 1.76846 1.57327 1.15611 1.22543 0.96757 0.97600 1.03379 1.21097 0.81008 0.95542 1.02045 1.45928 1.06665 1.09505 1.77645 1.18596 0.88165 0.82446 0.74324 1.90637 1.70302 1.31684 1.53086 1.18919 0.90159 0.94636 1.25129 1.20461 0.94850 0.94569 0.98307 1.20968 0.92684 0.98844 1.07301 1.17790 0.93212 0.91170 0.85323 1.19838 0.92098 1.00016 1.35097 0.89715 1.26100 1.01651 0.94623 0.92301 1.69744 1.39047 1.08738 1.22063 0.86215 0.81238 0.78699 0.80242 1.19236 1.19751 1.18087 1.20726 0.93219 0.97425 1.14444 1.20372 0.93915 0.95747 0.94124 0.92715 0.92944 0.92060 0.90976 0.91620 0.77966 0.90376 0.90985 0.91449 0.92271 0.76932 0.89396 0.86237 0.90271 0.88361 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.81 37.16 0.36 -0.71 16 2 C -0.16 -1.11 5.61 -26.73 -0.15 -1.26 16 3 C 0.11 0.97 2.97 -26.73 -0.08 0.89 16 4 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 5 O -0.56 -5.55 12.41 -35.23 -0.44 -5.99 16 6 C -0.16 -1.60 5.01 -26.73 -0.13 -1.74 16 7 C 0.13 1.81 5.57 -4.04 -0.02 1.79 16 8 N -0.74 -12.58 5.50 -61.31 -0.34 -12.91 16 9 C 0.57 12.43 7.76 -12.42 -0.10 12.33 16 10 O -0.58 -14.17 16.32 5.29 0.09 -14.09 16 11 C -0.28 -6.57 5.89 -104.73 -0.62 -7.19 16 12 C -0.06 -1.39 9.47 -39.61 -0.38 -1.77 16 13 C -0.18 -4.37 8.63 -39.27 -0.34 -4.71 16 14 C 0.13 3.28 5.57 -106.80 -0.60 2.68 16 15 C -0.44 -11.02 9.04 -37.75 -0.34 -11.36 16 16 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 17 C 0.07 1.73 5.13 -17.31 -0.09 1.64 16 18 N -0.77 -18.44 10.97 55.56 0.61 -17.83 16 19 Si 0.91 17.19 29.60 -169.99 -5.03 12.16 16 20 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 21 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 22 H -0.26 -4.84 7.11 56.52 0.40 -4.43 16 23 C -0.24 -5.83 9.73 -39.27 -0.38 -6.21 16 24 C -0.02 -0.54 9.52 -39.61 -0.38 -0.91 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.47 7.82 -51.93 -0.41 0.07 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.37 2.49 9.05 45.56 0.41 2.90 16 31 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.07 1.05 7.82 -51.93 -0.41 0.65 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.40 5.87 6.47 -40.82 -0.26 5.60 16 36 H 0.09 1.64 6.37 -52.48 -0.33 1.30 16 37 H 0.12 2.95 6.17 -52.49 -0.32 2.62 16 38 H 0.29 6.12 8.29 -40.82 -0.34 5.79 16 39 H 0.10 2.23 8.06 -52.48 -0.42 1.81 16 40 H 0.10 2.35 7.63 -52.48 -0.40 1.95 16 LS Contribution 336.59 15.07 5.07 5.07 Total: -1.00 -29.66 336.59 -8.35 -38.01 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -5.08 Total: 12.10 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: -3.23 Total: -16.52 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.27 Total: -30.75 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.35 Total: -20.08 kcal Atomic # 14 Polarization: 17.19 SS G_CDS: -5.03 Total: 12.16 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.66 -8.35 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270384768.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.078 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds